| http://purl.uniprot.org/unirules/MF_03173#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:860127 up:source unirule:MF_03173 .
_:860128 up:source unirule:MF_03173 .
_:860129 up:source unirule:MF_03173 .
_:860130 up:source unirule:MF_03173 .
_:860131 up:source unirule:MF_03173 .
_:860132 up:source unirule:MF_03173 .
_:860133 up:source unirule:MF_03173 .
_:860134 up:source unirule:MF_03173 .
_:860135 up:source unirule:MF_03173 .
_:860136 up:source unirule:MF_03173 .
_:860137 up:source unirule:MF_03173 .
_:860138 up:source unirule:MF_03173 .
_:860139 up:source unirule:MF_03173 .
_:860140 up:source unirule:MF_03173 .
_:860141 up:source unirule:MF_03173 .
_:860142 up:source unirule:MF_03173 .
_:860143 up:source unirule:MF_03173 .
_:860144 up:source unirule:MF_03173 .
_:860145 up:source unirule:MF_03173 .
_:860146 up:source unirule:MF_03173 .
_:860147 up:source unirule:MF_03173 .
_:860148 up:source unirule:MF_03173 .
_:860149 up:source unirule:MF_03173 .
_:860150 up:source unirule:MF_03173 .
_:860151 up:source unirule:MF_03173 .
_:860152 up:source unirule:MF_03173 .
_:860153 up:source unirule:MF_03173 .
_:860154 up:source unirule:MF_03173 .
_:860155 up:source unirule:MF_03173 .
_:860156 up:source unirule:MF_03173 .
_:860157 up:source unirule:MF_03173 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0004017 ,
GO:0005634 ,
GO:0005737 ,
GO:0016887 ,
GO:0042274 ,
keyword:418 ,
keyword:539 ,
keyword:547 ,
keyword:67 ,
keyword:690 ,
keyword:698 ,
keyword:808 ,
keyword:963 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the adenylate kinase family. AK6 subfamily.' .
?case5 up:alternativeName ?name7 ,
?name8 ;
up:classifiedWith GO:0015030 ;
up:recommendedName ?name6 .
?name6 up:ecName '2.7.4.3' ;
up:fullName 'Adenylate kinase isoenzyme 6' ;
up:shortName 'AK6' ;
rdf:type up:Structured_Name .
?name7 up:fullName 'Coilin-interacting nuclear ATPase protein' ;
rdf:type up:Structured_Name .
?name8 up:fullName 'Dual activity adenylate kinase/ATPase' ;
up:shortName 'AK/ATPase' ;
rdf:type up:Structured_Name .
?case10 up:alternativeName ?name12 ;
up:recommendedName ?name11 .
?name11 up:ecName '2.7.4.3' ;
up:fullName 'Adenylate kinase isoenzyme 6 homolog' ;
up:shortName 'AK6' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'Dual activity adenylate kinase/ATPase' ;
up:shortName 'AK/ATPase' ;
rdf:type up:Structured_Name .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'NMPbind' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'LID' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:30616 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:30616 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:30616 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:30616 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:30616 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:30616 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:30616 .
_:860158 a rdf:Statement ;
up:attribution _:860127 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:860159 a rdf:Statement ;
up:attribution _:860128 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:860160 a rdf:Statement ;
up:attribution _:860129 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:860161 a rdf:Statement ;
up:attribution _:860130 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:860162 a rdf:Statement ;
up:attribution _:860131 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:860163 a rdf:Statement ;
up:attribution _:860132 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:860164 a rdf:Statement ;
up:attribution _:860133 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:860165 a rdf:Statement ;
up:attribution _:860134 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:860166 a rdf:Statement ;
up:attribution _:860135 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:690 .
_:860167 a rdf:Statement ;
up:attribution _:860136 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:860168 a rdf:Statement ;
up:attribution _:860137 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:860169 a rdf:Statement ;
up:attribution _:860138 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:860170 a rdf:Statement ;
up:attribution _:860139 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005634 .
_:860171 a rdf:Statement ;
up:attribution _:860140 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004017 .
_:860172 a rdf:Statement ;
up:attribution _:860141 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016887 .
_:860173 a rdf:Statement ;
up:attribution _:860142 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042274 .
_:860174 a rdf:Statement ;
up:attribution _:860143 ;
rdf:subject ?case5 ;
rdf:predicate up:recommendedName ;
rdf:object ?name6 .
_:860175 a rdf:Statement ;
up:attribution _:860144 ;
rdf:subject ?case5 ;
rdf:predicate up:alternativeName ;
rdf:object ?name7 .
_:860176 a rdf:Statement ;
up:attribution _:860145 ;
rdf:subject ?case5 ;
rdf:predicate up:alternativeName ;
rdf:object ?name8 .
_:860177 a rdf:Statement ;
up:attribution _:860146 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015030 .
_:860178 a rdf:Statement ;
up:attribution _:860147 ;
rdf:subject ?case10 ;
rdf:predicate up:recommendedName ;
rdf:object ?name11 .
_:860179 a rdf:Statement ;
up:attribution _:860148 ;
rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:860180 a rdf:Statement ;
up:source unirule:MF_03173 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:860181 a rdf:Statement ;
up:attribution _:860149 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:860182 a rdf:Statement ;
up:source unirule:MF_03173 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:860183 a rdf:Statement ;
up:attribution _:860150 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:860184 a rdf:Statement ;
up:source unirule:MF_03173 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:860185 a rdf:Statement ;
up:attribution _:860151 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:860186 a rdf:Statement ;
up:source unirule:MF_03173 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:860187 a rdf:Statement ;
up:attribution _:860152 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:860188 a rdf:Statement ;
up:source unirule:MF_03173 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:860189 a rdf:Statement ;
up:attribution _:860153 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:860190 a rdf:Statement ;
up:source unirule:MF_03173 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:860191 a rdf:Statement ;
up:attribution _:860154 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:860192 a rdf:Statement ;
up:source unirule:MF_03173 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:860193 a rdf:Statement ;
up:attribution _:860155 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:860194 a rdf:Statement ;
up:source unirule:MF_03173 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:860195 a rdf:Statement ;
up:attribution _:860156 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:860196 a rdf:Statement ;
up:source unirule:MF_03173 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:860197 a rdf:Statement ;
up:attribution _:860157 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03173
#Rule MF_03173 Created by:? on:2013-03-21 Modified by:Catherine Rivoire on:2025-06-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00039 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03173a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionQ9Y3D880 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3D882 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3D8MF_0003975 .
?templateMotifSequenceMatchRegionQ9Y3D880 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3D881 .
?templateMotifSequenceMatchBeginQ9Y3D881 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3D876 ;
faldo:reference isoform:Q9Y3D8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3D882 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0003986 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3D8MF_0003977 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0003985 .
?targetMotifMatchRegionMatchBeginMF_0003985 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0003978 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0003986 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3D8MF_0003975, 1, (STRLEN(?templateMotifCigarQ9Y3D8MF_0003975) - STRLEN(REPLACE(?templateMotifCigarQ9Y3D8MF_0003975, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionQ9Y3D876) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_0003977, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_0003977) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_0003977, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_0003977, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_0003977) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_0003977, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0003978) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3D8MF_0003975, 1, (STRLEN(?templateMotifCigarQ9Y3D8MF_0003975) - STRLEN(REPLACE(?templateMotifCigarQ9Y3D8MF_0003975, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ9Y3D876) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_0003977, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_0003977) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_0003977, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_0003977, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_0003977) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_0003977, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0003978) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionQ9Y3D897 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3D899 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3D8MF_0003992 .
?templateMotifSequenceMatchRegionQ9Y3D897 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3D898 .
?templateMotifSequenceMatchBeginQ9Y3D898 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3D893 ;
faldo:reference isoform:Q9Y3D8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3D899 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00039103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3D8MF_0003994 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00039102 .
?targetMotifMatchRegionMatchBeginMF_00039102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0003995 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00039103 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3D8MF_0003992, 1, (STRLEN(?templateMotifCigarQ9Y3D8MF_0003992) - STRLEN(REPLACE(?templateMotifCigarQ9Y3D8MF_0003992, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionQ9Y3D893) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_0003994, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_0003994) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_0003994, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_0003994, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_0003994) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_0003994, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0003995) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3D8MF_0003992, 1, (STRLEN(?templateMotifCigarQ9Y3D8MF_0003992) - STRLEN(REPLACE(?templateMotifCigarQ9Y3D8MF_0003992, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionQ9Y3D893) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_0003994, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_0003994) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_0003994, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_0003994, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_0003994) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_0003994, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0003995) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionQ9Y3D8114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3D8116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3D8MF_00039109 .
?templateMotifSequenceMatchRegionQ9Y3D8114 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3D8115 .
?templateMotifSequenceMatchBeginQ9Y3D8115 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3D8110 ;
faldo:reference isoform:Q9Y3D8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3D8116 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00039120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3D8MF_00039111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00039119 .
?targetMotifMatchRegionMatchBeginMF_00039119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00039112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00039120 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3D8MF_00039109, 1, (STRLEN(?templateMotifCigarQ9Y3D8MF_00039109) - STRLEN(REPLACE(?templateMotifCigarQ9Y3D8MF_00039109, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionQ9Y3D8110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039111, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039111) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039111, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039111) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_00039112) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionQ9Y3D8129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3D8131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3D8MF_00039124 .
?templateMotifSequenceMatchRegionQ9Y3D8129 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3D8130 .
?templateMotifSequenceMatchBeginQ9Y3D8130 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3D8125 ;
faldo:reference isoform:Q9Y3D8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3D8131 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00039135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3D8MF_00039126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00039134 .
?targetMotifMatchRegionMatchBeginMF_00039134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00039127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00039135 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3D8MF_00039124, 1, (STRLEN(?templateMotifCigarQ9Y3D8MF_00039124) - STRLEN(REPLACE(?templateMotifCigarQ9Y3D8MF_00039124, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionQ9Y3D8125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039126, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039126) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039126, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039126) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_00039127) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionQ9Y3D8144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3D8146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3D8MF_00039139 .
?templateMotifSequenceMatchRegionQ9Y3D8144 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3D8145 .
?templateMotifSequenceMatchBeginQ9Y3D8145 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3D8140 ;
faldo:reference isoform:Q9Y3D8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3D8146 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00039150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3D8MF_00039141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00039149 .
?targetMotifMatchRegionMatchBeginMF_00039149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00039142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00039150 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3D8MF_00039139, 1, (STRLEN(?templateMotifCigarQ9Y3D8MF_00039139) - STRLEN(REPLACE(?templateMotifCigarQ9Y3D8MF_00039139, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionQ9Y3D8140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039141, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039141) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039141, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039141) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00039142) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionQ9Y3D8159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3D8161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3D8MF_00039154 .
?templateMotifSequenceMatchRegionQ9Y3D8159 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3D8160 .
?templateMotifSequenceMatchBeginQ9Y3D8160 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3D8155 ;
faldo:reference isoform:Q9Y3D8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3D8161 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00039165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3D8MF_00039156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00039164 .
?targetMotifMatchRegionMatchBeginMF_00039164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00039157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00039165 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3D8MF_00039154, 1, (STRLEN(?templateMotifCigarQ9Y3D8MF_00039154) - STRLEN(REPLACE(?templateMotifCigarQ9Y3D8MF_00039154, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionQ9Y3D8155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039156, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039156) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039156, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039156) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00039157) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionQ9Y3D8174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3D8176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3D8MF_00039169 .
?templateMotifSequenceMatchRegionQ9Y3D8174 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3D8175 .
?templateMotifSequenceMatchBeginQ9Y3D8175 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3D8170 ;
faldo:reference isoform:Q9Y3D8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3D8176 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00039180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3D8MF_00039171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00039179 .
?targetMotifMatchRegionMatchBeginMF_00039179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00039172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00039180 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3D8MF_00039169, 1, (STRLEN(?templateMotifCigarQ9Y3D8MF_00039169) - STRLEN(REPLACE(?templateMotifCigarQ9Y3D8MF_00039169, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionQ9Y3D8170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039171, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039171) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039171, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039171) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00039172) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER (REGEX('[STIVY]', SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionQ9Y3D8189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3D8191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3D8MF_00039184 .
?templateMotifSequenceMatchRegionQ9Y3D8189 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3D8190 .
?templateMotifSequenceMatchBeginQ9Y3D8190 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3D8185 ;
faldo:reference isoform:Q9Y3D8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3D8191 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00039195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3D8MF_00039186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00039194 .
?targetMotifMatchRegionMatchBeginMF_00039194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00039187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00039195 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3D8MF_00039184, 1, (STRLEN(?templateMotifCigarQ9Y3D8MF_00039184) - STRLEN(REPLACE(?templateMotifCigarQ9Y3D8MF_00039184, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionQ9Y3D8185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039186, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039186) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039186, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039186) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_00039187) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionQ9Y3D8204 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3D8206 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3D8MF_00039199 .
?templateMotifSequenceMatchRegionQ9Y3D8204 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3D8205 .
?templateMotifSequenceMatchBeginQ9Y3D8205 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3D8200 ;
faldo:reference isoform:Q9Y3D8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3D8206 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00039210 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3D8MF_00039201 .
?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00039209 .
?targetMotifMatchRegionMatchBeginMF_00039209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00039202 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00039210 edam:has_input signature:MF_00039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3D8MF_00039199, 1, (STRLEN(?templateMotifCigarQ9Y3D8MF_00039199) - STRLEN(REPLACE(?templateMotifCigarQ9Y3D8MF_00039199, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionQ9Y3D8200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039201, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039201) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3D8MF_00039201, 1, (STRLEN(?targetMotifMatchCigarQ9Y3D8MF_00039201) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3D8MF_00039201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_00039202) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case5) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a6')) AS ?name6) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a7')) AS ?name7) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33208 .
})) .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7742 .
})) .
BIND(?this AS ?case10) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_03173a12')) AS ?name12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7742 .
})) .
BIND(?this AS ?case13) .
}
}
"xsd:string |
