| http://purl.uniprot.org/unirules/MF_03221#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:888681 up:source unirule:MF_03221 .
_:888682 up:source unirule:MF_03221 .
_:888683 up:source unirule:MF_03221 .
_:888684 up:source unirule:MF_03221 .
_:888685 up:source unirule:MF_03221 .
_:888686 up:source unirule:MF_03221 .
_:888687 up:source unirule:MF_03221 .
_:888688 up:source unirule:MF_03221 .
_:888689 up:source unirule:MF_03221 .
_:888690 up:source unirule:MF_03221 .
_:888691 up:source unirule:MF_03221 .
_:888692 up:source unirule:MF_03221 .
_:888693 up:source unirule:MF_03221 .
_:888694 up:source unirule:MF_03221 .
_:888695 up:source unirule:MF_03221 .
_:888696 up:source unirule:MF_03221 .
_:888697 up:source unirule:MF_03221 .
_:888698 up:source unirule:MF_03221 .
_:888699 up:source unirule:MF_03221 .
_:888700 up:source unirule:MF_03221 .
_:888701 up:source unirule:MF_03221 .
_:888702 up:source unirule:MF_03221 .
_:888703 up:source unirule:MF_03221 .
_:888704 up:source unirule:MF_03221 .
_:888705 up:source unirule:MF_03221 .
_:888706 up:source unirule:MF_03221 .
_:888707 up:source unirule:MF_03221 .
_:888708 up:source unirule:MF_03221 .
_:888709 up:source unirule:MF_03221 .
_:888710 up:source unirule:MF_03221 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0004775 ,
GO:0005525 ,
GO:0006099 ,
keyword:342 ,
keyword:436 ,
keyword:496 ,
keyword:547 ,
keyword:816 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.2.1.4' ;
up:fullName 'Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'GTP-specific succinyl-CoA synthetase subunit beta' ;
up:shortName 'G-SCS' ,
'GTPSCS' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Succinyl-CoA synthetase beta-G chain' ;
up:shortName 'SCS-betaG' ;
rdf:type up:Structured_Name .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'GTP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Heterodimer of an alpha and a beta subunit. The beta subunit determines specificity for GTP.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the succinate/malate CoA ligase beta subunit family. GTP-specific subunit beta subfamily.' .
?case11 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?pfs13 up:annotation ?annotation14 ,
?annotation20 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:18420 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:18420 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:37565 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:37565 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf ?molecule45 .
?molecule45 rdfs:label 'substrate' .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:37565 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf ?molecule60 .
?molecule60 rdfs:label 'substrate' .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for substrate specificity' .
?pfsb65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for substrate specificity' .
?pfsb71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
rdf:type up:Domain_Extent_Annotation ;
rdfs:comment 'ATP-grasp' .
?pfsb77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
_:888711 a rdf:Statement ;
up:attribution _:888681 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:888712 a rdf:Statement ;
up:attribution _:888682 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:888713 a rdf:Statement ;
up:attribution _:888683 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:888714 a rdf:Statement ;
up:attribution _:888684 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:888715 a rdf:Statement ;
up:attribution _:888685 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:888716 a rdf:Statement ;
up:attribution _:888686 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:888717 a rdf:Statement ;
up:attribution _:888687 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:888718 a rdf:Statement ;
up:attribution _:888688 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:888719 a rdf:Statement ;
up:attribution _:888689 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:888720 a rdf:Statement ;
up:attribution _:888690 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:888721 a rdf:Statement ;
up:attribution _:888691 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:888722 a rdf:Statement ;
up:attribution _:888692 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:888723 a rdf:Statement ;
up:attribution _:888693 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:888724 a rdf:Statement ;
up:attribution _:888694 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:816 .
_:888725 a rdf:Statement ;
up:attribution _:888695 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005525 .
_:888726 a rdf:Statement ;
up:attribution _:888696 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004775 .
_:888727 a rdf:Statement ;
up:attribution _:888697 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006099 .
_:888728 a rdf:Statement ;
up:attribution _:888698 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:888729 a rdf:Statement ;
up:attribution _:888699 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:888730 a rdf:Statement ;
up:attribution _:888700 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:888731 a rdf:Statement ;
up:source unirule:MF_03221 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:888732 a rdf:Statement ;
up:attribution _:888701 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:888733 a rdf:Statement ;
up:source unirule:MF_03221 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:888734 a rdf:Statement ;
up:attribution _:888702 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:888735 a rdf:Statement ;
up:source unirule:MF_03221 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:888736 a rdf:Statement ;
up:attribution _:888703 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:888737 a rdf:Statement ;
up:source unirule:MF_03221 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:888738 a rdf:Statement ;
up:attribution _:888704 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:888739 a rdf:Statement ;
up:source unirule:MF_03221 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:888740 a rdf:Statement ;
up:attribution _:888705 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:888741 a rdf:Statement ;
up:source unirule:MF_03221 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:888742 a rdf:Statement ;
up:attribution _:888706 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:888743 a rdf:Statement ;
up:source unirule:MF_03221 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:888744 a rdf:Statement ;
up:attribution _:888707 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:888745 a rdf:Statement ;
up:source unirule:MF_03221 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:888746 a rdf:Statement ;
up:attribution _:888708 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:888747 a rdf:Statement ;
up:source unirule:MF_03221 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:888748 a rdf:Statement ;
up:attribution _:888709 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:888749 a rdf:Statement ;
up:source unirule:MF_03221 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:888750 a rdf:Statement ;
up:attribution _:888710 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03221
#Rule MF_03221 Created by:? on:2016-10-20 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03221 .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03221 .
?thisOrganism rdfs:subClassOf+ taxon:554915 .
}
BIND(URI(CONCAT(STR(?this), '#MF_03221a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionP5359086 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5359088 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53590MF_0322181 .
?templateMotifSequenceMatchRegionP5359086 faldo:begin ?templateMotifSequenceMatchBeginP5359087 .
?templateMotifSequenceMatchBeginP5359087 faldo:position ?templateMotifSequenceMatchBeginPositionP5359082 ;
faldo:reference isoform:P53590-1 .
?templateMotifSequenceProfileAlignmentOperationP5359088 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0322192 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53590MF_0322183 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0322191 .
?targetMotifMatchRegionMatchBeginMF_0322191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0322184 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0322192 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_0322181, 1, (STRLEN(?templateMotifCigarP53590MF_0322181) - STRLEN(REPLACE(?templateMotifCigarP53590MF_0322181, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionP5359082) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_0322183, 1, (STRLEN(?targetMotifMatchCigarP53590MF_0322183) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_0322183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_0322183, 1, (STRLEN(?targetMotifMatchCigarP53590MF_0322183) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_0322183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0322184) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'N')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_0322181, 1, (STRLEN(?templateMotifCigarP53590MF_0322181) - STRLEN(REPLACE(?templateMotifCigarP53590MF_0322181, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionP5359082) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_0322183, 1, (STRLEN(?targetMotifMatchCigarP53590MF_0322183) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_0322183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_0322183, 1, (STRLEN(?targetMotifMatchCigarP53590MF_0322183) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_0322183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0322184) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'D')) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP53590104 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53590106 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53590MF_0322199 .
?templateMotifSequenceMatchRegionP53590104 faldo:begin ?templateMotifSequenceMatchBeginP53590105 .
?templateMotifSequenceMatchBeginP53590105 faldo:position ?templateMotifSequenceMatchBeginPositionP53590100 ;
faldo:reference isoform:P53590-1 .
?templateMotifSequenceProfileAlignmentOperationP53590106 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03221110 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53590MF_03221101 .
?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03221109 .
?targetMotifMatchRegionMatchBeginMF_03221109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03221102 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03221110 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_0322199, 1, (STRLEN(?templateMotifCigarP53590MF_0322199) - STRLEN(REPLACE(?templateMotifCigarP53590MF_0322199, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP53590100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_03221101, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221101) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_03221101, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221101) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_03221102) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs2t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER (BOUND(?thisPositionOn31)) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP53590119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53590121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53590MF_03221114 .
?templateMotifSequenceMatchRegionP53590119 faldo:begin ?templateMotifSequenceMatchBeginP53590120 .
?templateMotifSequenceMatchBeginP53590120 faldo:position ?templateMotifSequenceMatchBeginPositionP53590115 ;
faldo:reference isoform:P53590-1 .
?templateMotifSequenceProfileAlignmentOperationP53590121 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03221125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53590MF_03221116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03221124 .
?targetMotifMatchRegionMatchBeginMF_03221124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03221117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03221125 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_03221114, 1, (STRLEN(?templateMotifCigarP53590MF_03221114) - STRLEN(REPLACE(?templateMotifCigarP53590MF_03221114, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP53590115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_03221116, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221116) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_03221116, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221116) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_03221117) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_03221114, 1, (STRLEN(?templateMotifCigarP53590MF_03221114) - STRLEN(REPLACE(?templateMotifCigarP53590MF_03221114, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP53590115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_03221116, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221116) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_03221116, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221116) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_03221117) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)) = 'GRG')) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP53590136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53590138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53590MF_03221131 .
?templateMotifSequenceMatchRegionP53590136 faldo:begin ?templateMotifSequenceMatchBeginP53590137 .
?templateMotifSequenceMatchBeginP53590137 faldo:position ?templateMotifSequenceMatchBeginPositionP53590132 ;
faldo:reference isoform:P53590-1 .
?templateMotifSequenceProfileAlignmentOperationP53590138 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03221142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53590MF_03221133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03221141 .
?targetMotifMatchRegionMatchBeginMF_03221141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03221134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03221142 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_03221131, 1, (STRLEN(?templateMotifCigarP53590MF_03221131) - STRLEN(REPLACE(?templateMotifCigarP53590MF_03221131, CONCAT('^(?:-*[^-]){', STR(((366 - ?templateMotifSequenceMatchBeginPositionP53590132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_03221133, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221133) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_03221133, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221133) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_03221134) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_03221131, 1, (STRLEN(?templateMotifCigarP53590MF_03221131) - STRLEN(REPLACE(?templateMotifCigarP53590MF_03221131, CONCAT('^(?:-*[^-]){', STR(((368 - ?templateMotifSequenceMatchBeginPositionP53590132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_03221133, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221133) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_03221133, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221133) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_03221134) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs2t147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse43) .
FILTER (REGEX('GI[VM]', SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP53590153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53590155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53590MF_03221148 .
?templateMotifSequenceMatchRegionP53590153 faldo:begin ?templateMotifSequenceMatchBeginP53590154 .
?templateMotifSequenceMatchBeginP53590154 faldo:position ?templateMotifSequenceMatchBeginPositionP53590149 ;
faldo:reference isoform:P53590-1 .
?templateMotifSequenceProfileAlignmentOperationP53590155 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03221159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53590MF_03221150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03221158 .
?targetMotifMatchRegionMatchBeginMF_03221158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03221151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03221159 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_03221148, 1, (STRLEN(?templateMotifCigarP53590MF_03221148) - STRLEN(REPLACE(?templateMotifCigarP53590MF_03221148, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP53590149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_03221150, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221150) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_03221150, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221150) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_03221151) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs2t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP53590168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53590170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53590MF_03221163 .
?templateMotifSequenceMatchRegionP53590168 faldo:begin ?templateMotifSequenceMatchBeginP53590169 .
?templateMotifSequenceMatchBeginP53590169 faldo:position ?templateMotifSequenceMatchBeginPositionP53590164 ;
faldo:reference isoform:P53590-1 .
?templateMotifSequenceProfileAlignmentOperationP53590170 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03221174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53590MF_03221165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03221173 .
?targetMotifMatchRegionMatchBeginMF_03221173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03221166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03221174 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_03221163, 1, (STRLEN(?templateMotifCigarP53590MF_03221163) - STRLEN(REPLACE(?templateMotifCigarP53590MF_03221163, CONCAT('^(?:-*[^-]){', STR(((309 - ?templateMotifSequenceMatchBeginPositionP53590164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_03221165, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221165) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_03221165, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221165) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_03221166) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP53590183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53590185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53590MF_03221178 .
?templateMotifSequenceMatchRegionP53590183 faldo:begin ?templateMotifSequenceMatchBeginP53590184 .
?templateMotifSequenceMatchBeginP53590184 faldo:position ?templateMotifSequenceMatchBeginPositionP53590179 ;
faldo:reference isoform:P53590-1 .
?templateMotifSequenceProfileAlignmentOperationP53590185 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03221189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53590MF_03221180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03221188 .
?targetMotifMatchRegionMatchBeginMF_03221188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03221181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03221189 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_03221178, 1, (STRLEN(?templateMotifCigarP53590MF_03221178) - STRLEN(REPLACE(?templateMotifCigarP53590MF_03221178, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP53590179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_03221180, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221180) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_03221180, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221180) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_03221181) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs2t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionP53590198 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53590200 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53590MF_03221193 .
?templateMotifSequenceMatchRegionP53590198 faldo:begin ?templateMotifSequenceMatchBeginP53590199 .
?templateMotifSequenceMatchBeginP53590199 faldo:position ?templateMotifSequenceMatchBeginPositionP53590194 ;
faldo:reference isoform:P53590-1 .
?templateMotifSequenceProfileAlignmentOperationP53590200 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03221204 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53590MF_03221195 .
?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03221203 .
?targetMotifMatchRegionMatchBeginMF_03221203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03221196 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03221204 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_03221193, 1, (STRLEN(?templateMotifCigarP53590MF_03221193) - STRLEN(REPLACE(?templateMotifCigarP53590MF_03221193, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionP53590194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_03221195, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221195) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_03221195, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221195) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_03221196) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs2t207) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse72) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP53590213 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53590215 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53590MF_03221208 .
?templateMotifSequenceMatchRegionP53590213 faldo:begin ?templateMotifSequenceMatchBeginP53590214 .
?templateMotifSequenceMatchBeginP53590214 faldo:position ?templateMotifSequenceMatchBeginPositionP53590209 ;
faldo:reference isoform:P53590-1 .
?templateMotifSequenceProfileAlignmentOperationP53590215 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03221219 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53590MF_03221210 .
?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03221218 .
?targetMotifMatchRegionMatchBeginMF_03221218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03221211 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03221219 edam:has_input signature:MF_03221 ;
rdf:type edam:operation_0300 .
?this rdfs:seeAlso .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_03221208, 1, (STRLEN(?templateMotifCigarP53590MF_03221208) - STRLEN(REPLACE(?templateMotifCigarP53590MF_03221208, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP53590209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_03221210, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221210) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_03221210, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221210) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_03221211) - 1) AS ?thisPositionOn79) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53590MF_03221208, 1, (STRLEN(?templateMotifCigarP53590MF_03221208) - STRLEN(REPLACE(?templateMotifCigarP53590MF_03221208, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionP53590209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53590MF_03221210, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221210) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53590MF_03221210, 1, (STRLEN(?targetMotifMatchCigarP53590MF_03221210) - STRLEN(REPLACE(?targetMotifMatchCigarP53590MF_03221210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) .
BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_03221211) - 1) AS ?thisPositionOn80) .
BIND(?this AS ?pfs3t224) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse78) .
FILTER ((BOUND(?thisPositionOn79) && BOUND(?thisPositionOn80))) .
BIND(URI(CONCAT(STR(?this), '#MF_03221a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag225) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag225, ?UNBOUND_VARIABLE) AS ?case11) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case12) .
}
}
"xsd:string |
