| http://purl.uniprot.org/unirules/MF_04063#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:921860 up:source unirule:MF_04063 .
_:921861 up:source unirule:MF_04063 .
_:921862 up:source unirule:MF_04063 .
_:921863 up:source unirule:MF_04063 .
_:921864 up:source unirule:MF_04063 .
_:921865 up:source unirule:MF_04063 .
_:921866 up:source unirule:MF_04063 .
_:921867 up:source unirule:MF_04063 .
_:921868 up:source unirule:MF_04063 .
_:921869 up:source unirule:MF_04063 .
_:921870 up:source unirule:MF_04063 .
_:921871 up:source unirule:MF_04063 .
_:921872 up:source unirule:MF_04063 .
_:921873 up:source unirule:MF_04063 .
_:921874 up:source unirule:MF_04063 .
_:921875 up:source unirule:MF_04063 .
_:921876 up:source unirule:MF_04063 .
_:921877 up:source unirule:MF_04063 .
_:921878 up:source unirule:MF_04063 .
_:921879 up:source unirule:MF_04063 .
_:921880 up:source unirule:MF_04063 .
_:921881 up:source unirule:MF_04063 .
_:921882 up:source unirule:MF_04063 .
_:921883 up:source unirule:MF_04063 .
_:921884 up:source unirule:MF_04063 .
_:921885 up:source unirule:MF_04063 .
_:921886 up:source unirule:MF_04063 .
_:921887 up:source unirule:MF_04063 .
_:921888 up:source unirule:MF_04063 .
_:921889 up:source unirule:MF_04063 .
_:921890 up:source unirule:MF_04063 .
_:921891 up:source unirule:MF_04063 .
_:921892 up:source unirule:MF_04063 .
_:921893 up:source unirule:MF_04063 .
_:921894 up:source unirule:MF_04063 .
_:921895 up:source unirule:MF_04063 .
_:921896 up:source unirule:MF_04063 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0003723 ,
GO:0006351 ,
GO:0030430 ,
GO:0039523 ,
GO:0042025 ,
GO:0075526 ,
keyword:1035 ,
keyword:1048 ,
keyword:1104 ,
keyword:1157 ,
keyword:1190 ,
keyword:1191 ,
keyword:1262 ,
keyword:255 ,
keyword:378 ,
keyword:464 ,
keyword:479 ,
keyword:540 ,
keyword:597 ,
keyword:945 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.-.-' ;
up:fullName 'Polymerase acidic protein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'RNA-directed RNA polymerase subunit P2' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'PA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Plays an essential role in viral RNA transcription and replication by forming the heterotrimeric polymerase complex together with PB1 and PB2 subunits. The complex transcribes viral mRNAs by using a unique mechanism called cap-snatching. It consists in the hijacking and cleavage of host capped pre-mRNAs. These short capped RNAs are then used as primers for viral mRNAs. The PB2 subunit is responsible for the binding of the 5' cap of cellular pre-mRNAs which are subsequently cleaved after 10-13 nucleotides by the PA subunit that carries the endonuclease activity." .
?annotation4 up:cofactor chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 manganese ions per subunit' .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Influenza RNA polymerase is composed of three subunits: PB1, PB2 and PA. Interacts (via C-terminus) with PB1 (via N-terminus).' .
?annotation6 a up:Subcellular_Location_Annotation ;
rdfs:comment 'PB1 and PA are transported in the host nucleus as a complex' .
?annotation6li7 up:cellularComponent .
?annotation6li8 up:cellularComponent .
?annotation9 a up:PTM_Annotation ;
rdfs:comment 'Phosphorylated on serines and threonines by host kinases, including human casein kinase II.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the influenza viruses PA family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear localization signal 1 (NLS1)' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear localization signal 2 (NLS2)' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29035 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29035 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:29035 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:29035 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:29035 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:29035 .
_:921897 a rdf:Statement ;
up:attribution _:921860 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:921898 a rdf:Statement ;
up:attribution _:921861 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:921899 a rdf:Statement ;
up:attribution _:921862 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:921900 a rdf:Statement ;
up:attribution _:921863 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:921901 a rdf:Statement ;
up:attribution _:921864 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:921902 a rdf:Statement ;
up:attribution _:921865 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:921903 a rdf:Statement ;
up:attribution _:921866 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:921904 a rdf:Statement ;
up:attribution _:921867 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:921905 a rdf:Statement ;
up:attribution _:921868 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:921906 a rdf:Statement ;
up:attribution _:921869 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1157 .
_:921907 a rdf:Statement ;
up:attribution _:921870 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:255 .
_:921908 a rdf:Statement ;
up:attribution _:921871 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1262 .
_:921909 a rdf:Statement ;
up:attribution _:921872 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1191 .
_:921910 a rdf:Statement ;
up:attribution _:921873 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1035 .
_:921911 a rdf:Statement ;
up:attribution _:921874 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1190 .
_:921912 a rdf:Statement ;
up:attribution _:921875 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:921913 a rdf:Statement ;
up:attribution _:921876 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:921914 a rdf:Statement ;
up:attribution _:921877 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:921915 a rdf:Statement ;
up:attribution _:921878 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1104 .
_:921916 a rdf:Statement ;
up:attribution _:921879 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:921917 a rdf:Statement ;
up:attribution _:921880 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:921918 a rdf:Statement ;
up:attribution _:921881 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:921919 a rdf:Statement ;
up:attribution _:921882 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:921920 a rdf:Statement ;
up:attribution _:921883 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030430 .
_:921921 a rdf:Statement ;
up:attribution _:921884 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:921922 a rdf:Statement ;
up:attribution _:921885 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:921923 a rdf:Statement ;
up:attribution _:921886 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0075526 .
_:921924 a rdf:Statement ;
up:attribution _:921887 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039523 .
_:921925 a rdf:Statement ;
up:attribution _:921888 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006351 .
_:921926 a rdf:Statement ;
up:source unirule:MF_04063 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:921927 a rdf:Statement ;
up:attribution _:921889 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:921928 a rdf:Statement ;
up:source unirule:MF_04063 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:921929 a rdf:Statement ;
up:attribution _:921890 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:921930 a rdf:Statement ;
up:source unirule:MF_04063 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:921931 a rdf:Statement ;
up:attribution _:921891 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:921932 a rdf:Statement ;
up:source unirule:MF_04063 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:921933 a rdf:Statement ;
up:attribution _:921892 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:921934 a rdf:Statement ;
up:source unirule:MF_04063 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:921935 a rdf:Statement ;
up:attribution _:921893 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:921936 a rdf:Statement ;
up:source unirule:MF_04063 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:921937 a rdf:Statement ;
up:attribution _:921894 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:921938 a rdf:Statement ;
up:source unirule:MF_04063 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:921939 a rdf:Statement ;
up:attribution _:921895 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:921940 a rdf:Statement ;
up:source unirule:MF_04063 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:921941 a rdf:Statement ;
up:attribution _:921896 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04063
#Rule MF_04063 Created by:? on:2017-03-30 Modified by:Catherine Rivoire on:2024-03-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04063 .
?thisOrganism rdfs:subClassOf+ taxon:11308 .
BIND(URI(CONCAT(STR(?this), '#MF_04063a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP0343370 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0343372 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03433MF_0406365 .
?templateMotifSequenceMatchRegionP0343370 faldo:begin ?templateMotifSequenceMatchBeginP0343371 .
?templateMotifSequenceMatchBeginP0343371 faldo:position ?templateMotifSequenceMatchBeginPositionP0343366 ;
faldo:reference isoform:P03433-1 .
?templateMotifSequenceProfileAlignmentOperationP0343372 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0406376 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03433MF_0406367 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0406375 .
?targetMotifMatchRegionMatchBeginMF_0406375 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0406368 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0406376 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_0406365, 1, (STRLEN(?templateMotifCigarP03433MF_0406365) - STRLEN(REPLACE(?templateMotifCigarP03433MF_0406365, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP0343366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_0406367, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406367) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_0406367, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406367) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0406368) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_0406365, 1, (STRLEN(?templateMotifCigarP03433MF_0406365) - STRLEN(REPLACE(?templateMotifCigarP03433MF_0406365, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP0343366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_0406367, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406367) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_0406367, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406367) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0406368) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP0343387 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0343389 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03433MF_0406382 .
?templateMotifSequenceMatchRegionP0343387 faldo:begin ?templateMotifSequenceMatchBeginP0343388 .
?templateMotifSequenceMatchBeginP0343388 faldo:position ?templateMotifSequenceMatchBeginPositionP0343383 ;
faldo:reference isoform:P03433-1 .
?templateMotifSequenceProfileAlignmentOperationP0343389 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0406393 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03433MF_0406384 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0406392 .
?targetMotifMatchRegionMatchBeginMF_0406392 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0406385 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0406393 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_0406382, 1, (STRLEN(?templateMotifCigarP03433MF_0406382) - STRLEN(REPLACE(?templateMotifCigarP03433MF_0406382, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionP0343383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_0406384, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406384) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_0406384, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406384) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0406385) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_0406382, 1, (STRLEN(?templateMotifCigarP03433MF_0406382) - STRLEN(REPLACE(?templateMotifCigarP03433MF_0406382, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP0343383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_0406384, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406384) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_0406384, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406384) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0406385) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((BOUND(?thisPositionOn21) && BOUND(?thisPositionOn22))) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP03433104 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03433106 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03433MF_0406399 .
?templateMotifSequenceMatchRegionP03433104 faldo:begin ?templateMotifSequenceMatchBeginP03433105 .
?templateMotifSequenceMatchBeginP03433105 faldo:position ?templateMotifSequenceMatchBeginPositionP03433100 ;
faldo:reference isoform:P03433-1 .
?templateMotifSequenceProfileAlignmentOperationP03433106 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04063110 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03433MF_04063101 .
?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04063109 .
?targetMotifMatchRegionMatchBeginMF_04063109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04063102 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04063110 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_0406399, 1, (STRLEN(?templateMotifCigarP03433MF_0406399) - STRLEN(REPLACE(?templateMotifCigarP03433MF_0406399, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP03433100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_04063101, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063101) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_04063101, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063101) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_04063102) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP03433119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03433121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03433MF_04063114 .
?templateMotifSequenceMatchRegionP03433119 faldo:begin ?templateMotifSequenceMatchBeginP03433120 .
?templateMotifSequenceMatchBeginP03433120 faldo:position ?templateMotifSequenceMatchBeginPositionP03433115 ;
faldo:reference isoform:P03433-1 .
?templateMotifSequenceProfileAlignmentOperationP03433121 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04063125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03433MF_04063116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04063124 .
?targetMotifMatchRegionMatchBeginMF_04063124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04063117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04063125 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_04063114, 1, (STRLEN(?templateMotifCigarP03433MF_04063114) - STRLEN(REPLACE(?templateMotifCigarP03433MF_04063114, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP03433115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_04063116, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063116) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_04063116, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063116) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_04063117) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP03433134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03433136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03433MF_04063129 .
?templateMotifSequenceMatchRegionP03433134 faldo:begin ?templateMotifSequenceMatchBeginP03433135 .
?templateMotifSequenceMatchBeginP03433135 faldo:position ?templateMotifSequenceMatchBeginPositionP03433130 ;
faldo:reference isoform:P03433-1 .
?templateMotifSequenceProfileAlignmentOperationP03433136 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04063140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03433MF_04063131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04063139 .
?targetMotifMatchRegionMatchBeginMF_04063139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04063132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04063140 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_04063129, 1, (STRLEN(?templateMotifCigarP03433MF_04063129) - STRLEN(REPLACE(?templateMotifCigarP03433MF_04063129, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP03433130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_04063131, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063131) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_04063131, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063131) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_04063132) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP03433149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03433151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03433MF_04063144 .
?templateMotifSequenceMatchRegionP03433149 faldo:begin ?templateMotifSequenceMatchBeginP03433150 .
?templateMotifSequenceMatchBeginP03433150 faldo:position ?templateMotifSequenceMatchBeginPositionP03433145 ;
faldo:reference isoform:P03433-1 .
?templateMotifSequenceProfileAlignmentOperationP03433151 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04063155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03433MF_04063146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04063154 .
?targetMotifMatchRegionMatchBeginMF_04063154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04063147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04063155 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_04063144, 1, (STRLEN(?templateMotifCigarP03433MF_04063144) - STRLEN(REPLACE(?templateMotifCigarP03433MF_04063144, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP03433145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_04063146, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063146) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_04063146, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063146) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_04063147) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP03433164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03433166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03433MF_04063159 .
?templateMotifSequenceMatchRegionP03433164 faldo:begin ?templateMotifSequenceMatchBeginP03433165 .
?templateMotifSequenceMatchBeginP03433165 faldo:position ?templateMotifSequenceMatchBeginPositionP03433160 ;
faldo:reference isoform:P03433-1 .
?templateMotifSequenceProfileAlignmentOperationP03433166 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04063170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03433MF_04063161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04063169 .
?targetMotifMatchRegionMatchBeginMF_04063169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04063162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04063170 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_04063159, 1, (STRLEN(?templateMotifCigarP03433MF_04063159) - STRLEN(REPLACE(?templateMotifCigarP03433MF_04063159, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionP03433160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_04063161, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063161) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_04063161, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063161) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_04063162) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP03433179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03433181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03433MF_04063174 .
?templateMotifSequenceMatchRegionP03433179 faldo:begin ?templateMotifSequenceMatchBeginP03433180 .
?templateMotifSequenceMatchBeginP03433180 faldo:position ?templateMotifSequenceMatchBeginPositionP03433175 ;
faldo:reference isoform:P03433-1 .
?templateMotifSequenceProfileAlignmentOperationP03433181 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04063185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03433MF_04063176 .
?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04063184 .
?targetMotifMatchRegionMatchBeginMF_04063184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04063177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04063185 edam:has_input signature:MF_04063 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_04063174, 1, (STRLEN(?templateMotifCigarP03433MF_04063174) - STRLEN(REPLACE(?templateMotifCigarP03433MF_04063174, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP03433175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_04063176, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063176) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_04063176, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063176) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_04063177) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_04063a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
}
"xsd:string |
