| http://purl.uniprot.org/unirules/MF_04096#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:948533 up:source unirule:MF_04096 .
_:948534 up:source unirule:MF_04096 .
_:948535 up:source unirule:MF_04096 .
_:948536 up:source unirule:MF_04096 .
_:948537 up:source unirule:MF_04096 .
_:948538 up:source unirule:MF_04096 .
_:948539 up:source unirule:MF_04096 .
_:948540 up:source unirule:MF_04096 .
_:948541 up:source unirule:MF_04096 .
_:948542 up:source unirule:MF_04096 .
_:948543 up:source unirule:MF_04096 .
_:948544 up:source unirule:MF_04096 .
_:948545 up:source unirule:MF_04096 .
_:948546 up:source unirule:MF_04096 .
_:948547 up:source unirule:MF_04096 .
_:948548 up:source unirule:MF_04096 .
_:948549 up:source unirule:MF_04096 .
_:948550 up:source unirule:MF_04096 .
_:948551 up:source unirule:MF_04096 .
_:948552 up:source unirule:MF_04096 .
_:948553 up:source unirule:MF_04096 .
_:948554 up:source unirule:MF_04096 .
_:948555 up:source unirule:MF_04096 .
_:948556 up:source unirule:MF_04096 .
_:948557 up:source unirule:MF_04096 .
_:948558 up:source unirule:MF_04096 .
_:948559 up:source unirule:MF_04096 .
_:948560 up:source unirule:MF_04096 .
_:948561 up:source unirule:MF_04096 .
_:948562 up:source unirule:MF_04096 .
_:948563 up:source unirule:MF_04096 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0003723 ,
GO:0019013 ,
GO:0044172 ,
GO:0044177 ,
keyword:1040 ,
keyword:13 ,
keyword:543 ,
keyword:597 ,
keyword:687 ,
keyword:694 ,
keyword:804 ,
keyword:805 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Nucleoprotein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Nucleocapsid protein' ;
up:shortName 'NC' ,
'Protein N' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'N' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Packages the positive strand viral genome RNA into a helical ribonucleocapsid (RNP) and plays a fundamental role during virion assembly through its interactions with the viral genome and membrane protein M. Plays an important role in enhancing the efficiency of subgenomic viral RNA transcription as well as viral replication.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homooligomer. Both monomeric and oligomeric forms interact with RNA. Interacts with protein M. Interacts with NSP3; this interaction serves to tether the genome to the newly translated replicase-transcriptase complex at a very early stage of infection.' .
?annotation5 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Located inside the virion, complexed with the viral RNA. Probably associates with ER-derived membranes where it participates in viral RNA synthesis and virus budding' .
?annotation5li6 up:cellularComponent .
?annotation5li7 up:cellularComponent .
?annotation5li8 up:cellularComponent .
?annotation9 a up:PTM_Annotation ;
rdfs:comment 'ADP-ribosylated. The ADP-ribosylation is retained in the virion during infection.' .
?annotation10 a up:PTM_Annotation ;
rdfs:comment 'Phosphorylated on serine and threonine residues.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the betacoronavirus nucleocapsid protein family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'RNA-binding' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Dimerization' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine; by host' .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine; by host' .
?pfsb62 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
_:948564 a rdf:Statement ;
up:attribution _:948533 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:948565 a rdf:Statement ;
up:attribution _:948534 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:948566 a rdf:Statement ;
up:attribution _:948535 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:948567 a rdf:Statement ;
up:attribution _:948536 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:948568 a rdf:Statement ;
up:attribution _:948537 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:948569 a rdf:Statement ;
up:attribution _:948538 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:948570 a rdf:Statement ;
up:attribution _:948539 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:948571 a rdf:Statement ;
up:attribution _:948540 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:948572 a rdf:Statement ;
up:attribution _:948541 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:948573 a rdf:Statement ;
up:attribution _:948542 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:13 .
_:948574 a rdf:Statement ;
up:attribution _:948543 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1040 .
_:948575 a rdf:Statement ;
up:attribution _:948544 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:948576 a rdf:Statement ;
up:attribution _:948545 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:687 .
_:948577 a rdf:Statement ;
up:attribution _:948546 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:948578 a rdf:Statement ;
up:attribution _:948547 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:948579 a rdf:Statement ;
up:attribution _:948548 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:948580 a rdf:Statement ;
up:attribution _:948549 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:543 .
_:948581 a rdf:Statement ;
up:attribution _:948550 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:948582 a rdf:Statement ;
up:attribution _:948551 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044172 .
_:948583 a rdf:Statement ;
up:attribution _:948552 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044177 .
_:948584 a rdf:Statement ;
up:attribution _:948553 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019013 .
_:948585 a rdf:Statement ;
up:attribution _:948554 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:948586 a rdf:Statement ;
up:source unirule:MF_04096 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:948587 a rdf:Statement ;
up:attribution _:948555 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:948588 a rdf:Statement ;
up:source unirule:MF_04096 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:948589 a rdf:Statement ;
up:attribution _:948556 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:948590 a rdf:Statement ;
up:source unirule:MF_04096 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:948591 a rdf:Statement ;
up:attribution _:948557 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:948592 a rdf:Statement ;
up:source unirule:MF_04096 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:948593 a rdf:Statement ;
up:attribution _:948558 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:948594 a rdf:Statement ;
up:source unirule:MF_04096 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:948595 a rdf:Statement ;
up:attribution _:948559 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:948596 a rdf:Statement ;
up:source unirule:MF_04096 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:948597 a rdf:Statement ;
up:attribution _:948560 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:948598 a rdf:Statement ;
up:source unirule:MF_04096 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:948599 a rdf:Statement ;
up:attribution _:948561 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:948600 a rdf:Statement ;
up:source unirule:MF_04096 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:948601 a rdf:Statement ;
up:attribution _:948562 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:948602 a rdf:Statement ;
up:source unirule:MF_04096 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:948603 a rdf:Statement ;
up:attribution _:948563 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04096
#Rule MF_04096 Created by:? on:2018-03-19 Modified by:Chantal Hulo on:2021-03-25
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04096 .
?thisOrganism rdfs:subClassOf+ taxon:694002 .
BIND(URI(CONCAT(STR(?this), '#MF_04096a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP5959571 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5959573 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP59595MF_0409666 .
?templateMotifSequenceMatchRegionP5959571 faldo:begin ?templateMotifSequenceMatchBeginP5959572 .
?templateMotifSequenceMatchBeginP5959572 faldo:position ?templateMotifSequenceMatchBeginPositionP5959567 ;
faldo:reference isoform:P59595-1 .
?templateMotifSequenceProfileAlignmentOperationP5959573 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409677 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP59595MF_0409668 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409676 .
?targetMotifMatchRegionMatchBeginMF_0409676 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409669 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0409677 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59595MF_0409666, 1, (STRLEN(?templateMotifCigarP59595MF_0409666) - STRLEN(REPLACE(?templateMotifCigarP59595MF_0409666, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP5959567) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59595MF_0409668, 1, (STRLEN(?targetMotifMatchCigarP59595MF_0409668) - STRLEN(REPLACE(?targetMotifMatchCigarP59595MF_0409668, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59595MF_0409668, 1, (STRLEN(?targetMotifMatchCigarP59595MF_0409668) - STRLEN(REPLACE(?targetMotifMatchCigarP59595MF_0409668, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0409669) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionP0341686 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0341688 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03416MF_0409681 .
?templateMotifSequenceMatchRegionP0341686 faldo:begin ?templateMotifSequenceMatchBeginP0341687 .
?templateMotifSequenceMatchBeginP0341687 faldo:position ?templateMotifSequenceMatchBeginPositionP0341682 ;
faldo:reference isoform:P03416-1 .
?templateMotifSequenceProfileAlignmentOperationP0341688 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409692 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03416MF_0409683 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409691 .
?targetMotifMatchRegionMatchBeginMF_0409691 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409684 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0409692 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03416MF_0409681, 1, (STRLEN(?templateMotifCigarP03416MF_0409681) - STRLEN(REPLACE(?templateMotifCigarP03416MF_0409681, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionP0341682) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03416MF_0409683, 1, (STRLEN(?targetMotifMatchCigarP03416MF_0409683) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_0409683, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03416MF_0409683, 1, (STRLEN(?targetMotifMatchCigarP03416MF_0409683) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_0409683, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0409684) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03416MF_0409681, 1, (STRLEN(?templateMotifCigarP03416MF_0409681) - STRLEN(REPLACE(?templateMotifCigarP03416MF_0409681, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP0341682) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03416MF_0409683, 1, (STRLEN(?targetMotifMatchCigarP03416MF_0409683) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_0409683, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03416MF_0409683, 1, (STRLEN(?targetMotifMatchCigarP03416MF_0409683) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_0409683, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0409684) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs2t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP03416103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03416105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03416MF_0409698 .
?templateMotifSequenceMatchRegionP03416103 faldo:begin ?templateMotifSequenceMatchBeginP03416104 .
?templateMotifSequenceMatchBeginP03416104 faldo:position ?templateMotifSequenceMatchBeginPositionP0341699 ;
faldo:reference isoform:P03416-1 .
?templateMotifSequenceProfileAlignmentOperationP03416105 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04096109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03416MF_04096100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04096108 .
?targetMotifMatchRegionMatchBeginMF_04096108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04096101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04096109 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03416MF_0409698, 1, (STRLEN(?templateMotifCigarP03416MF_0409698) - STRLEN(REPLACE(?templateMotifCigarP03416MF_0409698, CONCAT('^(?:-*[^-]){', STR(((267 - ?templateMotifSequenceMatchBeginPositionP0341699) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03416MF_04096100, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096100) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03416MF_04096100, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096100) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_04096101) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03416MF_0409698, 1, (STRLEN(?templateMotifCigarP03416MF_0409698) - STRLEN(REPLACE(?templateMotifCigarP03416MF_0409698, CONCAT('^(?:-*[^-]){', STR(((383 - ?templateMotifSequenceMatchBeginPositionP0341699) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03416MF_04096100, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096100) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03416MF_04096100, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096100) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_04096101) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs2t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((BOUND(?thisPositionOn28) && BOUND(?thisPositionOn29))) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionP03416120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03416122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03416MF_04096115 .
?templateMotifSequenceMatchRegionP03416120 faldo:begin ?templateMotifSequenceMatchBeginP03416121 .
?templateMotifSequenceMatchBeginP03416121 faldo:position ?templateMotifSequenceMatchBeginPositionP03416116 ;
faldo:reference isoform:P03416-1 .
?templateMotifSequenceProfileAlignmentOperationP03416122 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04096126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03416MF_04096117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04096125 .
?targetMotifMatchRegionMatchBeginMF_04096125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04096118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04096126 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03416MF_04096115, 1, (STRLEN(?templateMotifCigarP03416MF_04096115) - STRLEN(REPLACE(?templateMotifCigarP03416MF_04096115, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP03416116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03416MF_04096117, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096117) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03416MF_04096117, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096117) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_04096118) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs2t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP03416135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03416137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03416MF_04096130 .
?templateMotifSequenceMatchRegionP03416135 faldo:begin ?templateMotifSequenceMatchBeginP03416136 .
?templateMotifSequenceMatchBeginP03416136 faldo:position ?templateMotifSequenceMatchBeginPositionP03416131 ;
faldo:reference isoform:P03416-1 .
?templateMotifSequenceProfileAlignmentOperationP03416137 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04096141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03416MF_04096132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04096140 .
?targetMotifMatchRegionMatchBeginMF_04096140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04096133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04096141 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03416MF_04096130, 1, (STRLEN(?templateMotifCigarP03416MF_04096130) - STRLEN(REPLACE(?templateMotifCigarP03416MF_04096130, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP03416131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03416MF_04096132, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096132) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03416MF_04096132, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096132) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_04096133) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionP03416150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03416152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03416MF_04096145 .
?templateMotifSequenceMatchRegionP03416150 faldo:begin ?templateMotifSequenceMatchBeginP03416151 .
?templateMotifSequenceMatchBeginP03416151 faldo:position ?templateMotifSequenceMatchBeginPositionP03416146 ;
faldo:reference isoform:P03416-1 .
?templateMotifSequenceProfileAlignmentOperationP03416152 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04096156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03416MF_04096147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04096155 .
?targetMotifMatchRegionMatchBeginMF_04096155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04096148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04096156 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03416MF_04096145, 1, (STRLEN(?templateMotifCigarP03416MF_04096145) - STRLEN(REPLACE(?templateMotifCigarP03416MF_04096145, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP03416146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03416MF_04096147, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096147) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03416MF_04096147, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096147) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_04096148) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs2t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP03416165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03416167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03416MF_04096160 .
?templateMotifSequenceMatchRegionP03416165 faldo:begin ?templateMotifSequenceMatchBeginP03416166 .
?templateMotifSequenceMatchBeginP03416166 faldo:position ?templateMotifSequenceMatchBeginPositionP03416161 ;
faldo:reference isoform:P03416-1 .
?templateMotifSequenceProfileAlignmentOperationP03416167 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04096171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03416MF_04096162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04096170 .
?targetMotifMatchRegionMatchBeginMF_04096170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04096163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04096171 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03416MF_04096160, 1, (STRLEN(?templateMotifCigarP03416MF_04096160) - STRLEN(REPLACE(?templateMotifCigarP03416MF_04096160, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionP03416161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03416MF_04096162, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096162) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03416MF_04096162, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096162) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_04096163) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs2t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP03416180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03416182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03416MF_04096175 .
?templateMotifSequenceMatchRegionP03416180 faldo:begin ?templateMotifSequenceMatchBeginP03416181 .
?templateMotifSequenceMatchBeginP03416181 faldo:position ?templateMotifSequenceMatchBeginPositionP03416176 ;
faldo:reference isoform:P03416-1 .
?templateMotifSequenceProfileAlignmentOperationP03416182 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04096186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03416MF_04096177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04096185 .
?targetMotifMatchRegionMatchBeginMF_04096185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04096178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04096186 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03416MF_04096175, 1, (STRLEN(?templateMotifCigarP03416MF_04096175) - STRLEN(REPLACE(?templateMotifCigarP03416MF_04096175, CONCAT('^(?:-*[^-]){', STR(((424 - ?templateMotifSequenceMatchBeginPositionP03416176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03416MF_04096177, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096177) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03416MF_04096177, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096177) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_04096178) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs2t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP03416195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03416197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03416MF_04096190 .
?templateMotifSequenceMatchRegionP03416195 faldo:begin ?templateMotifSequenceMatchBeginP03416196 .
?templateMotifSequenceMatchBeginP03416196 faldo:position ?templateMotifSequenceMatchBeginPositionP03416191 ;
faldo:reference isoform:P03416-1 .
?templateMotifSequenceProfileAlignmentOperationP03416197 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04096201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03416MF_04096192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04096200 .
?targetMotifMatchRegionMatchBeginMF_04096200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04096193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04096201 edam:has_input signature:MF_04096 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03416MF_04096190, 1, (STRLEN(?templateMotifCigarP03416MF_04096190) - STRLEN(REPLACE(?templateMotifCigarP03416MF_04096190, CONCAT('^(?:-*[^-]){', STR(((428 - ?templateMotifSequenceMatchBeginPositionP03416191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03416MF_04096192, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096192) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03416MF_04096192, 1, (STRLEN(?targetMotifMatchCigarP03416MF_04096192) - STRLEN(REPLACE(?targetMotifMatchCigarP03416MF_04096192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_04096193) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs2t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04096a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
}
"xsd:string |
