| http://purl.uniprot.org/unirules/MF_00067#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:26290 up:source unirule:MF_00067 .
_:26291 up:source unirule:MF_00067 .
_:26292 up:source unirule:MF_00067 .
_:26293 up:source unirule:MF_00067 .
_:26294 up:source unirule:MF_00067 .
_:26295 up:source unirule:MF_00067 .
_:26296 up:source unirule:MF_00067 .
_:26297 up:source unirule:MF_00067 .
_:26298 up:source unirule:MF_00067 .
_:26299 up:source unirule:MF_00067 .
_:26300 up:source unirule:MF_00067 .
_:26301 up:source unirule:MF_00067 .
_:26302 up:source unirule:MF_00067 .
_:26303 up:source unirule:MF_00067 .
_:26304 up:source unirule:MF_00067 .
_:26305 up:source unirule:MF_00067 .
_:26306 up:source unirule:MF_00067 .
_:26307 up:source unirule:MF_00067 .
_:26308 up:source unirule:MF_00067 .
_:26309 up:source unirule:MF_00067 .
_:26310 up:source unirule:MF_00067 .
_:26311 up:source unirule:MF_00067 .
_:26312 up:source unirule:MF_00067 .
_:26313 up:source unirule:MF_00067 .
_:26314 up:source unirule:MF_00067 .
_:26315 up:source unirule:MF_00067 .
_:26316 up:source unirule:MF_00067 .
_:26317 up:source unirule:MF_00067 .
_:26318 up:source unirule:MF_00067 .
_:26319 up:source unirule:MF_00067 .
_:26320 up:source unirule:MF_00067 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0005975 ,
GO:0008270 ,
GO:0008968 ,
keyword:119 ,
keyword:413 ,
keyword:479 ,
keyword:862 ,
keyword:963 .
?gene0 skos:prefLabel 'gmhA' .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 zinc ion per subunit.' .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate biosynthesis; D-glycero-D-manno-heptose 7-phosphate biosynthesis; D-glycero-alpha-D-manno-heptose 7-phosphate and D-glycero-beta-D-manno-heptose 7-phosphate from sedoheptulose 7-phosphate: step 1/1.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Annotation ;
rdfs:comment 'The reaction produces a racemic mixture of D-glycero-alpha-D-manno-heptose 7-phosphate and D-glycero-beta-D-manno-heptose 7-phosphate.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the SIS family. GmhA subfamily.' .
?case10 up:alternativeName ?name12 ;
up:recommendedName ?name11 .
?name11 up:ecName '5.3.1.28' ;
up:fullName 'Probable phosphoheptose isomerase' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'Sedoheptulose 7-phosphate isomerase' ;
rdf:type up:Structured_Name .
?case13 up:alternativeName ?name15 ;
up:recommendedName ?name14 .
?name14 up:ecName '5.3.1.28' ;
up:fullName 'Phosphoheptose isomerase' ;
rdf:type up:Structured_Name .
?name15 up:fullName 'Sedoheptulose 7-phosphate isomerase' ;
rdf:type up:Structured_Name .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf ?molecule22 .
?molecule22 rdfs:label 'substrate' .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf ?molecule30 .
?molecule30 rdfs:label 'substrate' .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf ?molecule38 .
?molecule38 rdfs:label 'substrate' .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:29105 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:29105 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:29105 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:29105 .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf ?molecule74 .
?molecule74 rdfs:label 'substrate' .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf ?molecule82 .
?molecule82 rdfs:label 'substrate' .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
up:ligand ?ligand89 ;
rdf:type up:Binding_Site_Annotation .
?pfsb87 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand89 rdfs:subClassOf ?molecule90 .
?molecule90 rdfs:label 'substrate' .
_:26321 a rdf:Statement ;
up:attribution _:26290 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:26322 a rdf:Statement ;
up:attribution _:26291 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:26323 a rdf:Statement ;
up:attribution _:26292 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:26324 a rdf:Statement ;
up:attribution _:26293 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:26325 a rdf:Statement ;
up:attribution _:26294 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:26326 a rdf:Statement ;
up:attribution _:26295 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:26327 a rdf:Statement ;
up:attribution _:26296 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:26328 a rdf:Statement ;
up:attribution _:26297 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:26329 a rdf:Statement ;
up:attribution _:26298 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:26330 a rdf:Statement ;
up:attribution _:26299 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:26331 a rdf:Statement ;
up:attribution _:26300 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:26332 a rdf:Statement ;
up:attribution _:26301 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:26333 a rdf:Statement ;
up:attribution _:26302 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:26334 a rdf:Statement ;
up:attribution _:26303 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:26335 a rdf:Statement ;
up:attribution _:26304 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008968 .
_:26336 a rdf:Statement ;
up:attribution _:26305 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005975 .
_:26337 a rdf:Statement ;
up:attribution _:26306 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:26338 a rdf:Statement ;
up:attribution _:26307 ;
rdf:subject ?case10 ;
rdf:predicate up:recommendedName ;
rdf:object ?name11 .
_:26339 a rdf:Statement ;
up:attribution _:26308 ;
rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:26340 a rdf:Statement ;
up:attribution _:26309 ;
rdf:subject ?case13 ;
rdf:predicate up:recommendedName ;
rdf:object ?name14 .
_:26341 a rdf:Statement ;
up:attribution _:26310 ;
rdf:subject ?case13 ;
rdf:predicate up:alternativeName ;
rdf:object ?name15 .
_:26342 a rdf:Statement ;
up:source unirule:MF_00067 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:26343 a rdf:Statement ;
up:attribution _:26311 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:26344 a rdf:Statement ;
up:source unirule:MF_00067 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:26345 a rdf:Statement ;
up:attribution _:26312 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:26346 a rdf:Statement ;
up:source unirule:MF_00067 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:26347 a rdf:Statement ;
up:attribution _:26313 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:26348 a rdf:Statement ;
up:source unirule:MF_00067 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:26349 a rdf:Statement ;
up:attribution _:26314 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:26350 a rdf:Statement ;
up:source unirule:MF_00067 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:26351 a rdf:Statement ;
up:attribution _:26315 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:26352 a rdf:Statement ;
up:source unirule:MF_00067 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:26353 a rdf:Statement ;
up:attribution _:26316 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:26354 a rdf:Statement ;
up:source unirule:MF_00067 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:26355 a rdf:Statement ;
up:attribution _:26317 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:26356 a rdf:Statement ;
up:source unirule:MF_00067 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:26357 a rdf:Statement ;
up:attribution _:26318 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:26358 a rdf:Statement ;
up:source unirule:MF_00067 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:26359 a rdf:Statement ;
up:attribution _:26319 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:26360 a rdf:Statement ;
up:source unirule:MF_00067 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:26361 a rdf:Statement ;
up:attribution _:26320 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00067
#Rule MF_00067 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon93 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00067 .
?thisOrganism rdfs:subClassOf+ ?supertaxon93 .
BIND(URI(CONCAT(STR(?this), '#MF_00067a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionQ93UJ299 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ93UJ2MF_0006794 .
?templateMotifSequenceMatchRegionQ93UJ299 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2100 .
?templateMotifSequenceMatchBeginQ93UJ2100 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ295 ;
faldo:reference isoform:Q93UJ2-1 .
?templateMotifSequenceProfileAlignmentOperationQ93UJ2101 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ93UJ2MF_0006796 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067104 .
?targetMotifMatchRegionMatchBeginMF_00067104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0006797 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00067105 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_0006794, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_0006794) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_0006794, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionQ93UJ295) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_0006796, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_0006796) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_0006796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_0006796, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_0006796) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_0006796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0006797) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_0006794, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_0006794) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_0006794, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionQ93UJ295) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_0006796, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_0006796) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_0006796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_0006796, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_0006796) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_0006796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0006797) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse20) .
FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ93UJ2MF_00067111 .
?templateMotifSequenceMatchRegionQ93UJ2116 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2117 .
?templateMotifSequenceMatchBeginQ93UJ2117 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2112 ;
faldo:reference isoform:Q93UJ2-1 .
?templateMotifSequenceProfileAlignmentOperationQ93UJ2118 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067121 .
?targetMotifMatchRegionMatchBeginMF_00067121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00067122 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067111, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067111) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067111, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionQ93UJ2112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067113, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067113) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067113, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067113) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00067114) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067111, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067111) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067111, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionQ93UJ2112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067113, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067113) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067113, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067113) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_00067114) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)) = 'ND')) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ93UJ2MF_00067128 .
?templateMotifSequenceMatchRegionQ93UJ2133 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2134 .
?templateMotifSequenceMatchBeginQ93UJ2134 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2129 ;
faldo:reference isoform:Q93UJ2-1 .
?templateMotifSequenceProfileAlignmentOperationQ93UJ2135 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067138 .
?targetMotifMatchRegionMatchBeginMF_00067138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00067139 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067128, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067128) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067128, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionQ93UJ2129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067130, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067130) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067130, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067130) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_00067131) - 1) AS ?thisPositionOn39) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067128, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067128) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067128, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionQ93UJ2129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067130, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067130) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067130, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067130) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_00067131) - 1) AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse36) .
FILTER (REGEX('[ST]TS', SUBSTR(?thisSequenceValue, ?thisPositionOn39, (?thisPositionOn40 - ?thisPositionOn39)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ93UJ2MF_00067145 .
?templateMotifSequenceMatchRegionQ93UJ2150 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2151 .
?templateMotifSequenceMatchBeginQ93UJ2151 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2146 ;
faldo:reference isoform:Q93UJ2-1 .
?templateMotifSequenceProfileAlignmentOperationQ93UJ2152 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067155 .
?targetMotifMatchRegionMatchBeginMF_00067155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00067156 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067145, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067145) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067145, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionQ93UJ2146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067147, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067147) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067147, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067147) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_00067148) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ93UJ2MF_00067160 .
?templateMotifSequenceMatchRegionQ93UJ2165 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2166 .
?templateMotifSequenceMatchBeginQ93UJ2166 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2161 ;
faldo:reference isoform:Q93UJ2-1 .
?templateMotifSequenceProfileAlignmentOperationQ93UJ2167 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067170 .
?targetMotifMatchRegionMatchBeginMF_00067170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00067171 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067160, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067160) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067160, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionQ93UJ2161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067162, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067162) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067162, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067162) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_00067163) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER (REGEX('[EQN]', SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ93UJ2MF_00067175 .
?templateMotifSequenceMatchRegionQ93UJ2180 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2181 .
?templateMotifSequenceMatchBeginQ93UJ2181 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2176 ;
faldo:reference isoform:Q93UJ2-1 .
?templateMotifSequenceProfileAlignmentOperationQ93UJ2182 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067185 .
?targetMotifMatchRegionMatchBeginMF_00067185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00067186 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067175, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067175) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067175, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ93UJ2176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067177, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067177) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067177, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067177) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_00067178) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER (REGEX('[QH]', SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ93UJ2MF_00067190 .
?templateMotifSequenceMatchRegionQ93UJ2195 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2196 .
?templateMotifSequenceMatchBeginQ93UJ2196 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2191 ;
faldo:reference isoform:Q93UJ2-1 .
?templateMotifSequenceProfileAlignmentOperationQ93UJ2197 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067200 .
?targetMotifMatchRegionMatchBeginMF_00067200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00067201 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067190, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067190) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067190, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionQ93UJ2191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067192, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067192) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067192, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067192) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_00067193) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ93UJ2MF_00067205 .
?templateMotifSequenceMatchRegionQ93UJ2210 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2211 .
?templateMotifSequenceMatchBeginQ93UJ2211 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2206 ;
faldo:reference isoform:Q93UJ2-1 .
?templateMotifSequenceProfileAlignmentOperationQ93UJ2212 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067215 .
?targetMotifMatchRegionMatchBeginMF_00067215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00067216 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067205, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067205) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067205, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionQ93UJ2206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067207, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067207) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067207, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067207) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_00067208) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse72) .
FILTER (REGEX('[EQN]', SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ93UJ2MF_00067220 .
?templateMotifSequenceMatchRegionQ93UJ2225 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2226 .
?templateMotifSequenceMatchBeginQ93UJ2226 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2221 ;
faldo:reference isoform:Q93UJ2-1 .
?templateMotifSequenceProfileAlignmentOperationQ93UJ2227 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067230 .
?targetMotifMatchRegionMatchBeginMF_00067230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00067231 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067220, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067220) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067220, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionQ93UJ2221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067222, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067222) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067222, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067222) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_00067223) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ93UJ2MF_00067235 .
?templateMotifSequenceMatchRegionQ93UJ2240 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2241 .
?templateMotifSequenceMatchBeginQ93UJ2241 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2236 ;
faldo:reference isoform:Q93UJ2-1 .
?templateMotifSequenceProfileAlignmentOperationQ93UJ2242 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067245 .
?targetMotifMatchRegionMatchBeginMF_00067245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00067246 edam:has_input signature:MF_00067 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067235, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067235) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067235, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ93UJ2236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067237, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067237) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067237, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067237) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_00067238) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse88) .
FILTER (REGEX('[QH]', SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case10) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a12')) AS ?name12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case13) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a14')) AS ?name14) .
BIND(URI(CONCAT(STR(?this), '#MF_00067a15')) AS ?name15) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(?this AS ?case16) .
}
}
"xsd:string |
