| http://purl.uniprot.org/unirules/MF_00107#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:42106 up:source unirule:MF_00107 .
_:42107 up:source unirule:MF_00107 .
_:42108 up:source unirule:MF_00107 .
_:42109 up:source unirule:MF_00107 .
_:42110 up:source unirule:MF_00107 .
_:42111 up:source unirule:MF_00107 .
_:42112 up:source unirule:MF_00107 .
_:42113 up:source unirule:MF_00107 .
_:42114 up:source unirule:MF_00107 .
_:42115 up:source unirule:MF_00107 .
_:42116 up:source unirule:MF_00107 .
_:42117 up:source unirule:MF_00107 .
_:42118 up:source unirule:MF_00107 .
_:42119 up:source unirule:MF_00107 .
_:42120 up:source unirule:MF_00107 .
_:42121 up:source unirule:MF_00107 .
_:42122 up:source unirule:MF_00107 .
_:42123 up:source unirule:MF_00107 .
_:42124 up:source unirule:MF_00107 .
_:42125 up:source unirule:MF_00107 .
_:42126 up:source unirule:MF_00107 .
_:42127 up:source unirule:MF_00107 .
_:42128 up:source unirule:MF_00107 .
_:42129 up:source unirule:MF_00107 .
_:42130 up:source unirule:MF_00107 .
_:42131 up:source unirule:MF_00107 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0008685 ,
GO:0019288 ,
keyword:414 ,
keyword:456 ,
keyword:479 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.6.1.12' ;
up:fullName '2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase' ;
up:shortName 'MECPP-synthase' ,
'MECDP-synthase' ,
'MECPS' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'ispF' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:60240 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 divalent metal cation per subunit.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 4/6.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the IspF family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:57919 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:57919 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:57919 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:57919 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:57919 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:57919 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:60240 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:60240 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:60240 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:57919 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:57919 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb88 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb94 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
_:42132 a rdf:Statement ;
up:attribution _:42106 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:42133 a rdf:Statement ;
up:attribution _:42107 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:42134 a rdf:Statement ;
up:attribution _:42108 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:42135 a rdf:Statement ;
up:attribution _:42109 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:42136 a rdf:Statement ;
up:attribution _:42110 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:42137 a rdf:Statement ;
up:attribution _:42111 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:42138 a rdf:Statement ;
up:attribution _:42112 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:42139 a rdf:Statement ;
up:attribution _:42113 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:42140 a rdf:Statement ;
up:attribution _:42114 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:414 .
_:42141 a rdf:Statement ;
up:attribution _:42115 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:42142 a rdf:Statement ;
up:attribution _:42116 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:42143 a rdf:Statement ;
up:attribution _:42117 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008685 .
_:42144 a rdf:Statement ;
up:attribution _:42118 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019288 .
_:42145 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:42146 a rdf:Statement ;
up:attribution _:42119 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:42147 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:42148 a rdf:Statement ;
up:attribution _:42120 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:42149 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:42150 a rdf:Statement ;
up:attribution _:42121 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:42151 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:42152 a rdf:Statement ;
up:attribution _:42122 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:42153 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:42154 a rdf:Statement ;
up:attribution _:42123 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:42155 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:42156 a rdf:Statement ;
up:attribution _:42124 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:42157 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:42158 a rdf:Statement ;
up:attribution _:42125 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:42159 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:42160 a rdf:Statement ;
up:attribution _:42126 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:42161 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:42162 a rdf:Statement ;
up:attribution _:42127 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:42163 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:42164 a rdf:Statement ;
up:attribution _:42128 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:42165 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:42166 a rdf:Statement ;
up:attribution _:42129 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:42167 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:42168 a rdf:Statement ;
up:attribution _:42130 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:42169 a rdf:Statement ;
up:source unirule:MF_00107 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:42170 a rdf:Statement ;
up:attribution _:42131 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00107
#Rule MF_00107 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-03-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00107 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01520 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP62617103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_0010798 .
?templateMotifSequenceMatchRegionP62617103 faldo:begin ?templateMotifSequenceMatchBeginP62617104 .
?templateMotifSequenceMatchBeginP62617104 faldo:position ?templateMotifSequenceMatchBeginPositionP6261799 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617105 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107108 .
?targetMotifMatchRegionMatchBeginMF_00107108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107109 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_0010798, 1, (STRLEN(?templateMotifCigarP62617MF_0010798) - STRLEN(REPLACE(?templateMotifCigarP62617MF_0010798, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP6261799) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107100, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107100) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107100, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107100) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_00107101) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_0010798, 1, (STRLEN(?templateMotifCigarP62617MF_0010798) - STRLEN(REPLACE(?templateMotifCigarP62617MF_0010798, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP6261799) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107100, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107100) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107100, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107100) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_00107101) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX]H', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionP62617120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_00107115 .
?templateMotifSequenceMatchRegionP62617120 faldo:begin ?templateMotifSequenceMatchBeginP62617121 .
?templateMotifSequenceMatchBeginP62617121 faldo:position ?templateMotifSequenceMatchBeginPositionP62617116 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617122 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107125 .
?targetMotifMatchRegionMatchBeginMF_00107125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107126 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107115, 1, (STRLEN(?templateMotifCigarP62617MF_00107115) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107115, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP62617116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107117, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107117) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107117, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107117) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_00107118) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107115, 1, (STRLEN(?templateMotifCigarP62617MF_00107115) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107115, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionP62617116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107117, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107117) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107117, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107117) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_00107118) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)) = 'HS')) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP62617137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_00107132 .
?templateMotifSequenceMatchRegionP62617137 faldo:begin ?templateMotifSequenceMatchBeginP62617138 .
?templateMotifSequenceMatchBeginP62617138 faldo:position ?templateMotifSequenceMatchBeginPositionP62617133 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617139 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107142 .
?targetMotifMatchRegionMatchBeginMF_00107142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107143 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107132, 1, (STRLEN(?templateMotifCigarP62617MF_00107132) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107132, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionP62617133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107134, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107134) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107134, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107134) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00107135) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107132, 1, (STRLEN(?templateMotifCigarP62617MF_00107132) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107132, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP62617133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107134, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107134) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107134, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107134) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_00107135) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER (REGEX('[DNEK][IVL][GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP62617154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_00107149 .
?templateMotifSequenceMatchRegionP62617154 faldo:begin ?templateMotifSequenceMatchBeginP62617155 .
?templateMotifSequenceMatchBeginP62617155 faldo:position ?templateMotifSequenceMatchBeginPositionP62617150 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617156 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107159 .
?targetMotifMatchRegionMatchBeginMF_00107159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107160 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107149, 1, (STRLEN(?templateMotifCigarP62617MF_00107149) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107149, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionP62617150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107151, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107151) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107151, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107151) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00107152) - 1) AS ?thisPositionOn35) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107149, 1, (STRLEN(?templateMotifCigarP62617MF_00107149) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107149, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP62617150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107151, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107151) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107151, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107151) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_00107152) - 1) AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER (REGEX('F[ARNDCQEGHILKMFPSTWYVBZJUOX][DNEQ][ARNDCQEGHILKMFPSTWYVBZJUOX][DNEQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn35, (?thisPositionOn36 - ?thisPositionOn35)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionP62617171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_00107166 .
?templateMotifSequenceMatchRegionP62617171 faldo:begin ?templateMotifSequenceMatchBeginP62617172 .
?templateMotifSequenceMatchBeginP62617172 faldo:position ?templateMotifSequenceMatchBeginPositionP62617167 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617173 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107168 .
?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107176 .
?targetMotifMatchRegionMatchBeginMF_00107176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107177 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107166, 1, (STRLEN(?templateMotifCigarP62617MF_00107166) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107166, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP62617167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107168, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107168) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107168, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107168) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00107169) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107166, 1, (STRLEN(?templateMotifCigarP62617MF_00107166) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107166, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionP62617167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107168, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107168) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107168, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107168) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00107169) - 1) AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER (REGEX('[ALVI][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)P[KNR]M[LAGI]', SUBSTR(?thisSequenceValue, ?thisPositionOn42, (?thisPositionOn43 - ?thisPositionOn42)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP62617188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_00107183 .
?templateMotifSequenceMatchRegionP62617188 faldo:begin ?templateMotifSequenceMatchBeginP62617189 .
?templateMotifSequenceMatchBeginP62617189 faldo:position ?templateMotifSequenceMatchBeginPositionP62617184 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617190 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107193 .
?targetMotifMatchRegionMatchBeginMF_00107193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107194 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107183, 1, (STRLEN(?templateMotifCigarP62617MF_00107183) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107183, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP62617184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107185, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107185) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107185, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107185) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00107186) - 1) AS ?thisPositionOn49) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107183, 1, (STRLEN(?templateMotifCigarP62617MF_00107183) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107183, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP62617184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107185, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107185) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107185, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107185) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_00107186) - 1) AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER (REGEX('[TS][TS][ARNDCQEGHILKMFPSTWYVBZJUOX][EDN]', SUBSTR(?thisSequenceValue, ?thisPositionOn49, (?thisPositionOn50 - ?thisPositionOn49)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionP62617205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_00107200 .
?templateMotifSequenceMatchRegionP62617205 faldo:begin ?templateMotifSequenceMatchBeginP62617206 .
?templateMotifSequenceMatchBeginP62617206 faldo:position ?templateMotifSequenceMatchBeginPositionP62617201 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617207 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107210 .
?targetMotifMatchRegionMatchBeginMF_00107210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107211 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107200, 1, (STRLEN(?templateMotifCigarP62617MF_00107200) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107200, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP62617201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107202, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107202) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107202, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107202) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_00107203) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t214) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionP62617220 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617222 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_00107215 .
?templateMotifSequenceMatchRegionP62617220 faldo:begin ?templateMotifSequenceMatchBeginP62617221 .
?templateMotifSequenceMatchBeginP62617221 faldo:position ?templateMotifSequenceMatchBeginPositionP62617216 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617222 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107226 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107217 .
?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107225 .
?targetMotifMatchRegionMatchBeginMF_00107225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107218 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107226 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107215, 1, (STRLEN(?templateMotifCigarP62617MF_00107215) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107215, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP62617216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107217, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107217) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107217, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107217) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) .
BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_00107218) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t229) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch234 faldo:location ?templateMotifSequenceMatchRegionP62617235 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617237 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_00107230 .
?templateMotifSequenceMatchRegionP62617235 faldo:begin ?templateMotifSequenceMatchBeginP62617236 .
?templateMotifSequenceMatchBeginP62617236 faldo:position ?templateMotifSequenceMatchBeginPositionP62617231 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617237 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch238 faldo:location ?targetMotifMatchRegionMatch239 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107241 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107232 .
?targetMotifMatchRegionMatch239 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107240 .
?targetMotifMatchRegionMatchBeginMF_00107240 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107233 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107241 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107230, 1, (STRLEN(?templateMotifCigarP62617MF_00107230) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107230, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP62617231) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1242) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107232, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107232) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107232, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107232) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), '')))), '[^-]', ''))) AS ?step2243) .
BIND(((?step2243 + ?targetMotifMatchRegionMatchBeginPositionMF_00107233) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t244) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch249 faldo:location ?templateMotifSequenceMatchRegionP62617250 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617252 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_00107245 .
?templateMotifSequenceMatchRegionP62617250 faldo:begin ?templateMotifSequenceMatchBeginP62617251 .
?templateMotifSequenceMatchBeginP62617251 faldo:position ?templateMotifSequenceMatchBeginPositionP62617246 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617252 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch253 faldo:location ?targetMotifMatchRegionMatch254 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107256 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107247 .
?targetMotifMatchRegionMatch254 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107255 .
?targetMotifMatchRegionMatchBeginMF_00107255 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107248 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107256 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107245, 1, (STRLEN(?templateMotifCigarP62617MF_00107245) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107245, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP62617246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1257) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107247, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107247) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107247, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107247) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), '')))), '[^-]', ''))) AS ?step2258) .
BIND(((?step2258 + ?targetMotifMatchRegionMatchBeginPositionMF_00107248) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t259) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch264 faldo:location ?templateMotifSequenceMatchRegionP62617265 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617267 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_00107260 .
?templateMotifSequenceMatchRegionP62617265 faldo:begin ?templateMotifSequenceMatchBeginP62617266 .
?templateMotifSequenceMatchBeginP62617266 faldo:position ?templateMotifSequenceMatchBeginPositionP62617261 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617267 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch268 faldo:location ?targetMotifMatchRegionMatch269 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107271 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107262 .
?targetMotifMatchRegionMatch269 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107270 .
?targetMotifMatchRegionMatchBeginMF_00107270 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107263 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107271 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107260, 1, (STRLEN(?templateMotifCigarP62617MF_00107260) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107260, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionP62617261) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1272) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107262, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107262) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107262, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107262) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), '')))), '[^-]', ''))) AS ?step2273) .
BIND(((?step2273 + ?targetMotifMatchRegionMatchBeginPositionMF_00107263) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t274) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER (REGEX('[RHK]', SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch279 faldo:location ?templateMotifSequenceMatchRegionP62617280 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617282 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_00107275 .
?templateMotifSequenceMatchRegionP62617280 faldo:begin ?templateMotifSequenceMatchBeginP62617281 .
?templateMotifSequenceMatchBeginP62617281 faldo:position ?templateMotifSequenceMatchBeginPositionP62617276 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617282 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch283 faldo:location ?targetMotifMatchRegionMatch284 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107286 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107277 .
?targetMotifMatchRegionMatch284 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107285 .
?targetMotifMatchRegionMatchBeginMF_00107285 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107278 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107286 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107275, 1, (STRLEN(?templateMotifCigarP62617MF_00107275) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107275, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP62617276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1287) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107277, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107277) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107277, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107277) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), '')))), '[^-]', ''))) AS ?step2288) .
BIND(((?step2288 + ?targetMotifMatchRegionMatchBeginPositionMF_00107278) - 1) AS ?thisPositionOn90) .
BIND(?thisPositionOn90 AS ?thisPositionOn91) .
BIND(?this AS ?pfs1t289) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse89) .
FILTER (REGEX('[HDN]', SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch294 faldo:location ?templateMotifSequenceMatchRegionP62617295 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62617297 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62617MF_00107290 .
?templateMotifSequenceMatchRegionP62617295 faldo:begin ?templateMotifSequenceMatchBeginP62617296 .
?templateMotifSequenceMatchBeginP62617296 faldo:position ?templateMotifSequenceMatchBeginPositionP62617291 ;
faldo:reference isoform:P62617-1 .
?templateMotifSequenceProfileAlignmentOperationP62617297 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch298 faldo:location ?targetMotifMatchRegionMatch299 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00107301 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62617MF_00107292 .
?targetMotifMatchRegionMatch299 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00107300 .
?targetMotifMatchRegionMatchBeginMF_00107300 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00107293 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00107301 edam:has_input signature:MF_00107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62617MF_00107290, 1, (STRLEN(?templateMotifCigarP62617MF_00107290) - STRLEN(REPLACE(?templateMotifCigarP62617MF_00107290, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP62617291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1302) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62617MF_00107292, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107292) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62617MF_00107292, 1, (STRLEN(?targetMotifMatchCigarP62617MF_00107292) - STRLEN(REPLACE(?targetMotifMatchCigarP62617MF_00107292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), '')))), '[^-]', ''))) AS ?step2303) .
BIND(((?step2303 + ?targetMotifMatchRegionMatchBeginPositionMF_00107293) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs1t304) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse95) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00107a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
}
"xsd:string |
