| http://purl.uniprot.org/unirules/MF_00145#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:56891 up:source unirule:MF_00145 .
_:56892 up:source unirule:MF_00145 .
_:56893 up:source unirule:MF_00145 .
_:56894 up:source unirule:MF_00145 .
_:56895 up:source unirule:MF_00145 .
_:56896 up:source unirule:MF_00145 .
_:56897 up:source unirule:MF_00145 .
_:56898 up:source unirule:MF_00145 .
_:56899 up:source unirule:MF_00145 .
_:56900 up:source unirule:MF_00145 .
_:56901 up:source unirule:MF_00145 .
_:56902 up:source unirule:MF_00145 .
_:56903 up:source unirule:MF_00145 .
_:56904 up:source unirule:MF_00145 .
_:56905 up:source unirule:MF_00145 .
_:56906 up:source unirule:MF_00145 .
_:56907 up:source unirule:MF_00145 .
_:56908 up:source unirule:MF_00145 .
_:56909 up:source unirule:MF_00145 .
_:56910 up:source unirule:MF_00145 .
_:56911 up:source unirule:MF_00145 .
_:56912 up:source unirule:MF_00145 .
_:56913 up:source unirule:MF_00145 .
_:56914 up:source unirule:MF_00145 .
_:56915 up:source unirule:MF_00145 .
_:56916 up:source unirule:MF_00145 .
_:56917 up:source unirule:MF_00145 .
_:56918 up:source unirule:MF_00145 .
_:56919 up:source unirule:MF_00145 .
_:56920 up:source unirule:MF_00145 .
?this up:annotation ?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0004618 ,
GO:0005737 ,
GO:0006096 ,
keyword:324 ,
keyword:418 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.2.3' ;
up:fullName 'Phosphoglycerate kinase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'pgk' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 2/5.' .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the phosphoglycerate kinase family.' .
?case9 up:classifiedWith keyword:7 .
?case10 up:classifiedWith keyword:597 .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:30616 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf ?molecule41 .
?molecule41 rdfs:label 'substrate' .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf ?molecule49 .
?molecule49 rdfs:label 'substrate' .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf ?molecule57 .
?molecule57 rdfs:label 'substrate' .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf ?molecule65 .
?molecule65 rdfs:label 'substrate' .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf ?molecule73 .
?molecule73 rdfs:label 'substrate' .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf chebi:30616 .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf chebi:30616 .
?pfs90 up:annotation ?annotation91 .
?annotation91 faldo:begin ?pfsb92 ;
faldo:end ?pfse93 ;
up:ligand ?ligand94 ;
rdf:type up:Binding_Site_Annotation .
?pfsb92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?ligand94 rdfs:subClassOf chebi:30616 .
_:56921 a rdf:Statement ;
up:attribution _:56891 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:56922 a rdf:Statement ;
up:attribution _:56892 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:56923 a rdf:Statement ;
up:attribution _:56893 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:56924 a rdf:Statement ;
up:attribution _:56894 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:56925 a rdf:Statement ;
up:attribution _:56895 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:56926 a rdf:Statement ;
up:attribution _:56896 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:56927 a rdf:Statement ;
up:attribution _:56897 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:56928 a rdf:Statement ;
up:attribution _:56898 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:56929 a rdf:Statement ;
up:attribution _:56899 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:56930 a rdf:Statement ;
up:attribution _:56900 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:324 .
_:56931 a rdf:Statement ;
up:attribution _:56901 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:56932 a rdf:Statement ;
up:attribution _:56902 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:56933 a rdf:Statement ;
up:attribution _:56903 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:56934 a rdf:Statement ;
up:attribution _:56904 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004618 .
_:56935 a rdf:Statement ;
up:attribution _:56905 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
_:56936 a rdf:Statement ;
up:attribution _:56906 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:56937 a rdf:Statement ;
up:attribution _:56907 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:56938 a rdf:Statement ;
up:attribution _:56908 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:56939 a rdf:Statement ;
up:source unirule:MF_00145 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:56940 a rdf:Statement ;
up:attribution _:56909 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:56941 a rdf:Statement ;
up:source unirule:MF_00145 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:56942 a rdf:Statement ;
up:attribution _:56910 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:56943 a rdf:Statement ;
up:source unirule:MF_00145 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:56944 a rdf:Statement ;
up:attribution _:56911 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:56945 a rdf:Statement ;
up:source unirule:MF_00145 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:56946 a rdf:Statement ;
up:attribution _:56912 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:56947 a rdf:Statement ;
up:source unirule:MF_00145 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:56948 a rdf:Statement ;
up:attribution _:56913 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:56949 a rdf:Statement ;
up:source unirule:MF_00145 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:56950 a rdf:Statement ;
up:attribution _:56914 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:56951 a rdf:Statement ;
up:source unirule:MF_00145 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:56952 a rdf:Statement ;
up:attribution _:56915 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:56953 a rdf:Statement ;
up:source unirule:MF_00145 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:56954 a rdf:Statement ;
up:attribution _:56916 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:56955 a rdf:Statement ;
up:source unirule:MF_00145 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:56956 a rdf:Statement ;
up:attribution _:56917 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:56957 a rdf:Statement ;
up:source unirule:MF_00145 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:56958 a rdf:Statement ;
up:attribution _:56918 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:56959 a rdf:Statement ;
up:source unirule:MF_00145 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:56960 a rdf:Statement ;
up:attribution _:56919 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:56961 a rdf:Statement ;
up:source unirule:MF_00145 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:56962 a rdf:Statement ;
up:attribution _:56920 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00145
#Rule MF_00145 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2022-11-19
VALUES ?supertaxon97 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00145 .
?thisOrganism rdfs:subClassOf+ ?supertaxon97 .
BIND(URI(CONCAT(STR(?this), '#MF_00145a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP0A799104 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A799106 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A799MF_0014599 .
?templateMotifSequenceMatchRegionP0A799104 faldo:begin ?templateMotifSequenceMatchBeginP0A799105 .
?templateMotifSequenceMatchBeginP0A799105 faldo:position ?templateMotifSequenceMatchBeginPositionP0A799100 ;
faldo:reference isoform:P0A799-1 .
?templateMotifSequenceProfileAlignmentOperationP0A799106 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00145110 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A799MF_00145101 .
?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00145109 .
?targetMotifMatchRegionMatchBeginMF_00145109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00145102 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00145110 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_10) .
VALUES ?supertaxon98 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon98 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A799MF_0014599, 1, (STRLEN(?templateMotifCigarP0A799MF_0014599) - STRLEN(REPLACE(?templateMotifCigarP0A799MF_0014599, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP0A799100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A799MF_00145101, 1, (STRLEN(?targetMotifMatchCigarP0A799MF_00145101) - STRLEN(REPLACE(?targetMotifMatchCigarP0A799MF_00145101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A799MF_00145101, 1, (STRLEN(?targetMotifMatchCigarP0A799MF_00145101) - STRLEN(REPLACE(?targetMotifMatchCigarP0A799MF_00145101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_00145102) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP40924119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40924121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40924MF_00145114 .
?templateMotifSequenceMatchRegionP40924119 faldo:begin ?templateMotifSequenceMatchBeginP40924120 .
?templateMotifSequenceMatchBeginP40924120 faldo:position ?templateMotifSequenceMatchBeginPositionP40924115 ;
faldo:reference isoform:P40924-1 .
?templateMotifSequenceProfileAlignmentOperationP40924121 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00145125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40924MF_00145116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00145124 .
?targetMotifMatchRegionMatchBeginMF_00145124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00145117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00145125 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_11) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:186817 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40924MF_00145114, 1, (STRLEN(?templateMotifCigarP40924MF_00145114) - STRLEN(REPLACE(?templateMotifCigarP40924MF_00145114, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionP40924115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40924MF_00145116, 1, (STRLEN(?targetMotifMatchCigarP40924MF_00145116) - STRLEN(REPLACE(?targetMotifMatchCigarP40924MF_00145116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40924MF_00145116, 1, (STRLEN(?targetMotifMatchCigarP40924MF_00145116) - STRLEN(REPLACE(?targetMotifMatchCigarP40924MF_00145116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_00145117) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs2t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP40924134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40924136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40924MF_00145129 .
?templateMotifSequenceMatchRegionP40924134 faldo:begin ?templateMotifSequenceMatchBeginP40924135 .
?templateMotifSequenceMatchBeginP40924135 faldo:position ?templateMotifSequenceMatchBeginPositionP40924130 ;
faldo:reference isoform:P40924-1 .
?templateMotifSequenceProfileAlignmentOperationP40924136 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00145140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40924MF_00145131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00145139 .
?targetMotifMatchRegionMatchBeginMF_00145139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00145132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00145140 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_12) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:186817 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40924MF_00145129, 1, (STRLEN(?templateMotifCigarP40924MF_00145129) - STRLEN(REPLACE(?templateMotifCigarP40924MF_00145129, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionP40924130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40924MF_00145131, 1, (STRLEN(?targetMotifMatchCigarP40924MF_00145131) - STRLEN(REPLACE(?targetMotifMatchCigarP40924MF_00145131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40924MF_00145131, 1, (STRLEN(?targetMotifMatchCigarP40924MF_00145131) - STRLEN(REPLACE(?targetMotifMatchCigarP40924MF_00145131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00145132) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs3t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP36204149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP36204151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36204MF_00145144 .
?templateMotifSequenceMatchRegionP36204149 faldo:begin ?templateMotifSequenceMatchBeginP36204150 .
?templateMotifSequenceMatchBeginP36204150 faldo:position ?templateMotifSequenceMatchBeginPositionP36204145 ;
faldo:reference isoform:P36204-1 .
?templateMotifSequenceProfileAlignmentOperationP36204151 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00145155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36204MF_00145146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00145154 .
?targetMotifMatchRegionMatchBeginMF_00145154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00145147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00145155 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36204MF_00145144, 1, (STRLEN(?templateMotifCigarP36204MF_00145144) - STRLEN(REPLACE(?templateMotifCigarP36204MF_00145144, CONCAT('^(?:-*[^-]){', STR(((353 - ?templateMotifSequenceMatchBeginPositionP36204145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36204MF_00145146, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145146) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36204MF_00145146, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145146) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_00145147) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36204MF_00145144, 1, (STRLEN(?templateMotifCigarP36204MF_00145144) - STRLEN(REPLACE(?templateMotifCigarP36204MF_00145144, CONCAT('^(?:-*[^-]){', STR(((356 - ?templateMotifSequenceMatchBeginPositionP36204145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36204MF_00145146, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145146) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36204MF_00145146, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145146) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_00145147) - 1) AS ?thisPositionOn35) .
BIND(?this AS ?pfs4t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER (REGEX('GG[DEH][STAILFM]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, (?thisPositionOn35 - ?thisPositionOn34)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP36204166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP36204168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36204MF_00145161 .
?templateMotifSequenceMatchRegionP36204166 faldo:begin ?templateMotifSequenceMatchBeginP36204167 .
?templateMotifSequenceMatchBeginP36204167 faldo:position ?templateMotifSequenceMatchBeginPositionP36204162 ;
faldo:reference isoform:P36204-1 .
?templateMotifSequenceProfileAlignmentOperationP36204168 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00145172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36204MF_00145163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00145171 .
?targetMotifMatchRegionMatchBeginMF_00145171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00145164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00145172 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36204MF_00145161, 1, (STRLEN(?templateMotifCigarP36204MF_00145161) - STRLEN(REPLACE(?templateMotifCigarP36204MF_00145161, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP36204162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36204MF_00145163, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145163) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36204MF_00145163, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145163) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_00145164) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36204MF_00145161, 1, (STRLEN(?templateMotifCigarP36204MF_00145161) - STRLEN(REPLACE(?templateMotifCigarP36204MF_00145161, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP36204162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36204MF_00145163, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145163) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36204MF_00145163, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145163) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_00145164) - 1) AS ?thisPositionOn43) .
BIND(?this AS ?pfs4t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse39) .
FILTER (REGEX('D[LFMYVI]N', SUBSTR(?thisSequenceValue, ?thisPositionOn42, (?thisPositionOn43 - ?thisPositionOn42)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP36204183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP36204185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36204MF_00145178 .
?templateMotifSequenceMatchRegionP36204183 faldo:begin ?templateMotifSequenceMatchBeginP36204184 .
?templateMotifSequenceMatchBeginP36204184 faldo:position ?templateMotifSequenceMatchBeginPositionP36204179 ;
faldo:reference isoform:P36204-1 .
?templateMotifSequenceProfileAlignmentOperationP36204185 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00145189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36204MF_00145180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00145188 .
?targetMotifMatchRegionMatchBeginMF_00145188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00145181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00145189 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36204MF_00145178, 1, (STRLEN(?templateMotifCigarP36204MF_00145178) - STRLEN(REPLACE(?templateMotifCigarP36204MF_00145178, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP36204179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36204MF_00145180, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145180) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36204MF_00145180, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145180) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00145181) - 1) AS ?thisPositionOn50) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36204MF_00145178, 1, (STRLEN(?templateMotifCigarP36204MF_00145178) - STRLEN(REPLACE(?templateMotifCigarP36204MF_00145178, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionP36204179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36204MF_00145180, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145180) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36204MF_00145180, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145180) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_00145181) - 1) AS ?thisPositionOn51) .
BIND(?this AS ?pfs4t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse47) .
FILTER (REGEX('[HQR][ARNDCQEGHILKMFPSTWYVBZJUOX][GSDRK][RGKNDP]', SUBSTR(?thisSequenceValue, ?thisPositionOn50, (?thisPositionOn51 - ?thisPositionOn50)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP36204200 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP36204202 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36204MF_00145195 .
?templateMotifSequenceMatchRegionP36204200 faldo:begin ?templateMotifSequenceMatchBeginP36204201 .
?templateMotifSequenceMatchBeginP36204201 faldo:position ?templateMotifSequenceMatchBeginPositionP36204196 ;
faldo:reference isoform:P36204-1 .
?templateMotifSequenceProfileAlignmentOperationP36204202 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00145206 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36204MF_00145197 .
?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00145205 .
?targetMotifMatchRegionMatchBeginMF_00145205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00145198 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00145206 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36204MF_00145195, 1, (STRLEN(?templateMotifCigarP36204MF_00145195) - STRLEN(REPLACE(?templateMotifCigarP36204MF_00145195, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP36204196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36204MF_00145197, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145197) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36204MF_00145197, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145197) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_00145198) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs4t209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionP36204215 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP36204217 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36204MF_00145210 .
?templateMotifSequenceMatchRegionP36204215 faldo:begin ?templateMotifSequenceMatchBeginP36204216 .
?templateMotifSequenceMatchBeginP36204216 faldo:position ?templateMotifSequenceMatchBeginPositionP36204211 ;
faldo:reference isoform:P36204-1 .
?templateMotifSequenceProfileAlignmentOperationP36204217 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00145221 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36204MF_00145212 .
?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00145220 .
?targetMotifMatchRegionMatchBeginMF_00145220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00145213 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00145221 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36204MF_00145210, 1, (STRLEN(?templateMotifCigarP36204MF_00145210) - STRLEN(REPLACE(?templateMotifCigarP36204MF_00145210, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP36204211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36204MF_00145212, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145212) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36204MF_00145212, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145212) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) .
BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_00145213) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs4t224) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionP36204230 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP36204232 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36204MF_00145225 .
?templateMotifSequenceMatchRegionP36204230 faldo:begin ?templateMotifSequenceMatchBeginP36204231 .
?templateMotifSequenceMatchBeginP36204231 faldo:position ?templateMotifSequenceMatchBeginPositionP36204226 ;
faldo:reference isoform:P36204-1 .
?templateMotifSequenceProfileAlignmentOperationP36204232 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00145236 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36204MF_00145227 .
?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00145235 .
?targetMotifMatchRegionMatchBeginMF_00145235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00145228 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00145236 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36204MF_00145225, 1, (STRLEN(?templateMotifCigarP36204MF_00145225) - STRLEN(REPLACE(?templateMotifCigarP36204MF_00145225, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionP36204226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36204MF_00145227, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145227) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36204MF_00145227, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145227) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) .
BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_00145228) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs4t239) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionP36204245 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP36204247 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36204MF_00145240 .
?templateMotifSequenceMatchRegionP36204245 faldo:begin ?templateMotifSequenceMatchBeginP36204246 .
?templateMotifSequenceMatchBeginP36204246 faldo:position ?templateMotifSequenceMatchBeginPositionP36204241 ;
faldo:reference isoform:P36204-1 .
?templateMotifSequenceProfileAlignmentOperationP36204247 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00145251 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36204MF_00145242 .
?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00145250 .
?targetMotifMatchRegionMatchBeginMF_00145250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00145243 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00145251 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36204MF_00145240, 1, (STRLEN(?templateMotifCigarP36204MF_00145240) - STRLEN(REPLACE(?templateMotifCigarP36204MF_00145240, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP36204241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36204MF_00145242, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145242) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36204MF_00145242, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145242) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) .
BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_00145243) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs4t254) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionP36204260 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP36204262 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36204MF_00145255 .
?templateMotifSequenceMatchRegionP36204260 faldo:begin ?templateMotifSequenceMatchBeginP36204261 .
?templateMotifSequenceMatchBeginP36204261 faldo:position ?templateMotifSequenceMatchBeginPositionP36204256 ;
faldo:reference isoform:P36204-1 .
?templateMotifSequenceProfileAlignmentOperationP36204262 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00145266 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36204MF_00145257 .
?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00145265 .
?targetMotifMatchRegionMatchBeginMF_00145265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00145258 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00145266 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36204MF_00145255, 1, (STRLEN(?templateMotifCigarP36204MF_00145255) - STRLEN(REPLACE(?templateMotifCigarP36204MF_00145255, CONCAT('^(?:-*[^-]){', STR(((293 - ?templateMotifSequenceMatchBeginPositionP36204256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36204MF_00145257, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145257) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36204MF_00145257, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145257) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) .
BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_00145258) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs4t269) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionP36204275 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP36204277 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36204MF_00145270 .
?templateMotifSequenceMatchRegionP36204275 faldo:begin ?templateMotifSequenceMatchBeginP36204276 .
?templateMotifSequenceMatchBeginP36204276 faldo:position ?templateMotifSequenceMatchBeginPositionP36204271 ;
faldo:reference isoform:P36204-1 .
?templateMotifSequenceProfileAlignmentOperationP36204277 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00145281 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36204MF_00145272 .
?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00145280 .
?targetMotifMatchRegionMatchBeginMF_00145280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00145273 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00145281 edam:has_input signature:MF_00145 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36204MF_00145270, 1, (STRLEN(?templateMotifCigarP36204MF_00145270) - STRLEN(REPLACE(?templateMotifCigarP36204MF_00145270, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionP36204271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36204MF_00145272, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145272) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36204MF_00145272, 1, (STRLEN(?targetMotifMatchCigarP36204MF_00145272) - STRLEN(REPLACE(?targetMotifMatchCigarP36204MF_00145272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) .
BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_00145273) - 1) AS ?thisPositionOn95) .
BIND(?thisPositionOn95 AS ?thisPositionOn96) .
BIND(?this AS ?pfs4t284) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse93) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00145a91')) AS ?annotation91) .
BIND(?this AS ?pfs90) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag285) .
}
BIND(IF(BOUND(?tagFT_10), ?caseWithTag285, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag286) .
}
BIND(IF((BOUND(?tagFT_11) || BOUND(?tagFT_12)), ?caseWithTag286, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
