| http://purl.uniprot.org/unirules/MF_00197#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:81076 up:source unirule:MF_00197 .
_:81077 up:source unirule:MF_00197 .
_:81078 up:source unirule:MF_00197 .
_:81079 up:source unirule:MF_00197 .
_:81080 up:source unirule:MF_00197 .
_:81081 up:source unirule:MF_00197 .
_:81082 up:source unirule:MF_00197 .
_:81083 up:source unirule:MF_00197 .
_:81084 up:source unirule:MF_00197 .
_:81085 up:source unirule:MF_00197 .
_:81086 up:source unirule:MF_00197 .
_:81087 up:source unirule:MF_00197 .
_:81088 up:source unirule:MF_00197 .
_:81089 up:source unirule:MF_00197 .
_:81090 up:source unirule:MF_00197 .
_:81091 up:source unirule:MF_00197 .
_:81092 up:source unirule:MF_00197 .
_:81093 up:source unirule:MF_00197 .
_:81094 up:source unirule:MF_00197 .
_:81095 up:source unirule:MF_00197 .
_:81096 up:source unirule:MF_00197 .
_:81097 up:source unirule:MF_00197 .
_:81098 up:source unirule:MF_00197 .
_:81099 up:source unirule:MF_00197 .
_:81100 up:source unirule:MF_00197 .
_:81101 up:source unirule:MF_00197 .
_:81102 up:source unirule:MF_00197 .
_:81103 up:source unirule:MF_00197 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0008837 ,
GO:0009089 ,
keyword:28 ,
keyword:413 ,
keyword:457 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.1.1.7' ;
up:fullName 'Diaminopimelate epimerase' ;
up:shortName 'DAP epimerase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'PLP-independent amino acid racemase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'dapF' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the diaminopimelate epimerase family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf ?molecule17 .
?molecule17 rdfs:label 'substrate' .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf ?molecule25 .
?molecule25 rdfs:label 'substrate' .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf ?molecule33 .
?molecule33 rdfs:label 'substrate' .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf ?molecule53 .
?molecule53 rdfs:label 'substrate' .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf ?molecule61 .
?molecule61 rdfs:label 'substrate' .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf ?molecule69 .
?molecule69 rdfs:label 'substrate' .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf ?molecule77 .
?molecule77 rdfs:label 'substrate' .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf ?molecule85 .
?molecule85 rdfs:label 'substrate' .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Could be important to modulate the pK values of the two catalytic cysteine residues' .
?pfsb90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Could be important to modulate the pK values of the two catalytic cysteine residues' .
?pfsb96 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for dimerization' .
?pfsb102 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
_:81104 a rdf:Statement ;
up:attribution _:81076 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:81105 a rdf:Statement ;
up:attribution _:81077 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:81106 a rdf:Statement ;
up:attribution _:81078 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:81107 a rdf:Statement ;
up:attribution _:81079 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:81108 a rdf:Statement ;
up:attribution _:81080 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:81109 a rdf:Statement ;
up:attribution _:81081 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:81110 a rdf:Statement ;
up:attribution _:81082 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:81111 a rdf:Statement ;
up:attribution _:81083 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:81112 a rdf:Statement ;
up:attribution _:81084 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:81113 a rdf:Statement ;
up:attribution _:81085 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:81114 a rdf:Statement ;
up:attribution _:81086 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:81115 a rdf:Statement ;
up:attribution _:81087 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:457 .
_:81116 a rdf:Statement ;
up:attribution _:81088 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008837 .
_:81117 a rdf:Statement ;
up:attribution _:81089 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009089 .
_:81118 a rdf:Statement ;
up:attribution _:81090 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:81119 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:81120 a rdf:Statement ;
up:attribution _:81091 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:81121 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:81122 a rdf:Statement ;
up:attribution _:81092 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:81123 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:81124 a rdf:Statement ;
up:attribution _:81093 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:81125 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:81126 a rdf:Statement ;
up:attribution _:81094 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:81127 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:81128 a rdf:Statement ;
up:attribution _:81095 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:81129 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:81130 a rdf:Statement ;
up:attribution _:81096 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:81131 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:81132 a rdf:Statement ;
up:attribution _:81097 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:81133 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:81134 a rdf:Statement ;
up:attribution _:81098 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:81135 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:81136 a rdf:Statement ;
up:attribution _:81099 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:81137 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:81138 a rdf:Statement ;
up:attribution _:81100 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:81139 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:81140 a rdf:Statement ;
up:attribution _:81101 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:81141 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:81142 a rdf:Statement ;
up:attribution _:81102 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:81143 a rdf:Statement ;
up:source unirule:MF_00197 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:81144 a rdf:Statement ;
up:attribution _:81103 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00197
#Rule MF_00197 Created by:? on:2005-02-28 Modified by:Elisabeth Coudert on:2025-01-09
VALUES ?supertaxon106 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00197 .
?thisOrganism rdfs:subClassOf+ ?supertaxon106 .
BIND(URI(CONCAT(STR(?this), '#MF_00197a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionP44859112 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859114 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197107 .
?templateMotifSequenceMatchRegionP44859112 faldo:begin ?templateMotifSequenceMatchBeginP44859113 .
?templateMotifSequenceMatchBeginP44859113 faldo:position ?templateMotifSequenceMatchBeginPositionP44859108 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859114 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197118 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197109 .
?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197117 .
?targetMotifMatchRegionMatchBeginMF_00197117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197110 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197118 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197107, 1, (STRLEN(?templateMotifCigarP44859MF_00197107) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197107, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP44859108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197109, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197109) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197109, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197109) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00197110) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197107, 1, (STRLEN(?templateMotifCigarP44859MF_00197107) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197107, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionP44859108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197109, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197109) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197109, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197109) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_00197110) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse15) .
FILTER (REGEX('[GI]N', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP44859129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197124 .
?templateMotifSequenceMatchRegionP44859129 faldo:begin ?templateMotifSequenceMatchBeginP44859130 .
?templateMotifSequenceMatchBeginP44859130 faldo:position ?templateMotifSequenceMatchBeginPositionP44859125 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859131 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197134 .
?targetMotifMatchRegionMatchBeginMF_00197134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197135 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197124, 1, (STRLEN(?templateMotifCigarP44859MF_00197124) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197124, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionP44859125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197126, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197126) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197126, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197126) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_00197127) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197124, 1, (STRLEN(?templateMotifCigarP44859MF_00197124) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197124, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP44859125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197126, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197126) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197126, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197126) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00197127) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)) = 'ER')) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP44859146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197141 .
?templateMotifSequenceMatchRegionP44859146 faldo:begin ?templateMotifSequenceMatchBeginP44859147 .
?templateMotifSequenceMatchBeginP44859147 faldo:position ?templateMotifSequenceMatchBeginPositionP44859142 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859148 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197151 .
?targetMotifMatchRegionMatchBeginMF_00197151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197152 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197141, 1, (STRLEN(?templateMotifCigarP44859MF_00197141) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197141, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionP44859142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197143, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197143) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197143, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197143) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_00197144) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197141, 1, (STRLEN(?templateMotifCigarP44859MF_00197141) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197141, CONCAT('^(?:-*[^-]){', STR(((219 - ?templateMotifSequenceMatchBeginPositionP44859142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197143, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197143) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197143, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197143) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_00197144) - 1) AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse31) .
FILTER (REGEX('G[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, (?thisPositionOn35 - ?thisPositionOn34)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionP44859163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197158 .
?templateMotifSequenceMatchRegionP44859163 faldo:begin ?templateMotifSequenceMatchBeginP44859164 .
?templateMotifSequenceMatchBeginP44859164 faldo:position ?templateMotifSequenceMatchBeginPositionP44859159 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859165 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197168 .
?targetMotifMatchRegionMatchBeginMF_00197168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197169 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197158, 1, (STRLEN(?templateMotifCigarP44859MF_00197158) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197158, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP44859159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197160, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197160) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197160, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197160) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_00197161) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionP44859178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197173 .
?templateMotifSequenceMatchRegionP44859178 faldo:begin ?templateMotifSequenceMatchBeginP44859179 .
?templateMotifSequenceMatchBeginP44859179 faldo:position ?templateMotifSequenceMatchBeginPositionP44859174 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859180 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197183 .
?targetMotifMatchRegionMatchBeginMF_00197183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197184 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197173, 1, (STRLEN(?templateMotifCigarP44859MF_00197173) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197173, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP44859174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197175, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197175) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197175, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197175) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_00197176) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionP44859193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197188 .
?templateMotifSequenceMatchRegionP44859193 faldo:begin ?templateMotifSequenceMatchBeginP44859194 .
?templateMotifSequenceMatchBeginP44859194 faldo:position ?templateMotifSequenceMatchBeginPositionP44859189 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859195 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197190 .
?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197198 .
?targetMotifMatchRegionMatchBeginMF_00197198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197199 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197188, 1, (STRLEN(?templateMotifCigarP44859MF_00197188) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197188, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP44859189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197190, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197190) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197190, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197190) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_00197191) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t202) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionP44859208 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859210 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197203 .
?templateMotifSequenceMatchRegionP44859208 faldo:begin ?templateMotifSequenceMatchBeginP44859209 .
?templateMotifSequenceMatchBeginP44859209 faldo:position ?templateMotifSequenceMatchBeginPositionP44859204 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859210 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197214 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197205 .
?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197213 .
?targetMotifMatchRegionMatchBeginMF_00197213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197206 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197214 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197203, 1, (STRLEN(?templateMotifCigarP44859MF_00197203) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197203, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP44859204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197205, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197205) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197205, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197205) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_00197206) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t217) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionP44859223 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859225 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197218 .
?templateMotifSequenceMatchRegionP44859223 faldo:begin ?templateMotifSequenceMatchBeginP44859224 .
?templateMotifSequenceMatchBeginP44859224 faldo:position ?templateMotifSequenceMatchBeginPositionP44859219 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859225 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197229 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197220 .
?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197228 .
?targetMotifMatchRegionMatchBeginMF_00197228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197221 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197229 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197218, 1, (STRLEN(?templateMotifCigarP44859MF_00197218) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197218, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP44859219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197220, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197220) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197220, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197220) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_00197221) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t232) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse67) .
FILTER (REGEX('[NQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch237 faldo:location ?templateMotifSequenceMatchRegionP44859238 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859240 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197233 .
?templateMotifSequenceMatchRegionP44859238 faldo:begin ?templateMotifSequenceMatchBeginP44859239 .
?templateMotifSequenceMatchBeginP44859239 faldo:position ?templateMotifSequenceMatchBeginPositionP44859234 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859240 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch241 faldo:location ?targetMotifMatchRegionMatch242 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197244 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197235 .
?targetMotifMatchRegionMatch242 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197243 .
?targetMotifMatchRegionMatchBeginMF_00197243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197236 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197244 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197233, 1, (STRLEN(?templateMotifCigarP44859MF_00197233) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197233, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP44859234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1245) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197235, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197235) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197235, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197235) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), '')))), '[^-]', ''))) AS ?step2246) .
BIND(((?step2246 + ?targetMotifMatchRegionMatchBeginPositionMF_00197236) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t247) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch252 faldo:location ?templateMotifSequenceMatchRegionP44859253 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859255 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197248 .
?templateMotifSequenceMatchRegionP44859253 faldo:begin ?templateMotifSequenceMatchBeginP44859254 .
?templateMotifSequenceMatchBeginP44859254 faldo:position ?templateMotifSequenceMatchBeginPositionP44859249 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859255 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch256 faldo:location ?targetMotifMatchRegionMatch257 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197259 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197250 .
?targetMotifMatchRegionMatch257 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197258 .
?targetMotifMatchRegionMatchBeginMF_00197258 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197251 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197259 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197248, 1, (STRLEN(?templateMotifCigarP44859MF_00197248) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197248, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP44859249) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197250, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197250) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197250, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197250) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_00197251) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch267 faldo:location ?templateMotifSequenceMatchRegionP44859268 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859270 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197263 .
?templateMotifSequenceMatchRegionP44859268 faldo:begin ?templateMotifSequenceMatchBeginP44859269 .
?templateMotifSequenceMatchBeginP44859269 faldo:position ?templateMotifSequenceMatchBeginPositionP44859264 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859270 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch271 faldo:location ?targetMotifMatchRegionMatch272 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197274 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197265 .
?targetMotifMatchRegionMatch272 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197273 .
?targetMotifMatchRegionMatchBeginMF_00197273 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197266 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197274 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197263, 1, (STRLEN(?templateMotifCigarP44859MF_00197263) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197263, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP44859264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197265, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197265) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197265, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197265) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) .
BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_00197266) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t277) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch282 faldo:location ?templateMotifSequenceMatchRegionP44859283 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859285 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197278 .
?templateMotifSequenceMatchRegionP44859283 faldo:begin ?templateMotifSequenceMatchBeginP44859284 .
?templateMotifSequenceMatchBeginP44859284 faldo:position ?templateMotifSequenceMatchBeginPositionP44859279 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859285 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch286 faldo:location ?targetMotifMatchRegionMatch287 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197289 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197280 .
?targetMotifMatchRegionMatch287 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197288 .
?targetMotifMatchRegionMatchBeginMF_00197288 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197281 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197289 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197278, 1, (STRLEN(?templateMotifCigarP44859MF_00197278) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197278, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionP44859279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1290) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197280, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197280) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197280, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197280) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), '')))), '[^-]', ''))) AS ?step2291) .
BIND(((?step2291 + ?targetMotifMatchRegionMatchBeginPositionMF_00197281) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs1t292) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch297 faldo:location ?templateMotifSequenceMatchRegionP44859298 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44859300 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44859MF_00197293 .
?templateMotifSequenceMatchRegionP44859298 faldo:begin ?templateMotifSequenceMatchBeginP44859299 .
?templateMotifSequenceMatchBeginP44859299 faldo:position ?templateMotifSequenceMatchBeginPositionP44859294 ;
faldo:reference isoform:P44859-1 .
?templateMotifSequenceProfileAlignmentOperationP44859300 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?targetMotifMatch301 faldo:location ?targetMotifMatchRegionMatch302 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00197304 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44859MF_00197295 .
?targetMotifMatchRegionMatch302 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00197303 .
?targetMotifMatchRegionMatchBeginMF_00197303 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00197296 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00197304 edam:has_input signature:MF_00197 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44859MF_00197293, 1, (STRLEN(?templateMotifCigarP44859MF_00197293) - STRLEN(REPLACE(?templateMotifCigarP44859MF_00197293, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionP44859294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1305) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44859MF_00197295, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197295) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44859MF_00197295, 1, (STRLEN(?targetMotifMatchCigarP44859MF_00197295) - STRLEN(REPLACE(?targetMotifMatchCigarP44859MF_00197295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), '')))), '[^-]', ''))) AS ?step2306) .
BIND(((?step2306 + ?targetMotifMatchRegionMatchBeginPositionMF_00197296) - 1) AS ?thisPositionOn104) .
BIND(?thisPositionOn104 AS ?thisPositionOn105) .
BIND(?this AS ?pfs2t307) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfse103) .
FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn104, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00197a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case11) .
}
}
"xsd:string |
