| http://purl.uniprot.org/unirules/MF_00336#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:136543 up:source unirule:MF_00336 .
_:136544 up:source unirule:MF_00336 .
_:136545 up:source unirule:MF_00336 .
_:136546 up:source unirule:MF_00336 .
_:136547 up:source unirule:MF_00336 .
_:136548 up:source unirule:MF_00336 .
_:136549 up:source unirule:MF_00336 .
_:136550 up:source unirule:MF_00336 .
_:136551 up:source unirule:MF_00336 .
_:136552 up:source unirule:MF_00336 .
_:136553 up:source unirule:MF_00336 .
_:136554 up:source unirule:MF_00336 .
_:136555 up:source unirule:MF_00336 .
_:136556 up:source unirule:MF_00336 .
_:136557 up:source unirule:MF_00336 .
_:136558 up:source unirule:MF_00336 .
_:136559 up:source unirule:MF_00336 .
_:136560 up:source unirule:MF_00336 .
_:136561 up:source unirule:MF_00336 .
_:136562 up:source unirule:MF_00336 .
_:136563 up:source unirule:MF_00336 .
_:136564 up:source unirule:MF_00336 .
_:136565 up:source unirule:MF_00336 .
_:136566 up:source unirule:MF_00336 .
_:136567 up:source unirule:MF_00336 .
_:136568 up:source unirule:MF_00336 .
_:136569 up:source unirule:MF_00336 .
_:136570 up:source unirule:MF_00336 .
_:136571 up:source unirule:MF_00336 .
_:136572 up:source unirule:MF_00336 .
_:136573 up:source unirule:MF_00336 .
_:136574 up:source unirule:MF_00336 .
_:136575 up:source unirule:MF_00336 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0000287 ,
GO:0004141 ,
GO:0005524 ,
GO:0009102 ,
keyword:436 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:67 ,
keyword:93 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.3.3' ;
up:fullName 'ATP-dependent dethiobiotin synthetase BioD' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'DTB synthetase' ;
up:shortName 'DTBS' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Dethiobiotin synthase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'bioD' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA, also called 7,8-diammoniononanoate) to form a ureido ring.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; biotin biosynthesis; biotin from 7,8-diaminononanoate: step 1/2.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the dethiobiotin synthetase family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:30616 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:30616 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:30616 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:30616 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
rdf:type up:Active_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:18420 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:18420 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:18420 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf ?molecule73 .
?molecule73 rdfs:label 'substrate' .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf chebi:30616 .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf chebi:30616 .
_:136576 a rdf:Statement ;
up:attribution _:136543 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:136577 a rdf:Statement ;
up:attribution _:136544 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:136578 a rdf:Statement ;
up:attribution _:136545 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:136579 a rdf:Statement ;
up:attribution _:136546 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:136580 a rdf:Statement ;
up:attribution _:136547 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:136581 a rdf:Statement ;
up:attribution _:136548 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:136582 a rdf:Statement ;
up:attribution _:136549 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:136583 a rdf:Statement ;
up:attribution _:136550 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:136584 a rdf:Statement ;
up:attribution _:136551 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:136585 a rdf:Statement ;
up:attribution _:136552 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:136586 a rdf:Statement ;
up:attribution _:136553 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:136587 a rdf:Statement ;
up:attribution _:136554 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:136588 a rdf:Statement ;
up:attribution _:136555 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:93 .
_:136589 a rdf:Statement ;
up:attribution _:136556 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:136590 a rdf:Statement ;
up:attribution _:136557 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:136591 a rdf:Statement ;
up:attribution _:136558 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:136592 a rdf:Statement ;
up:attribution _:136559 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:136593 a rdf:Statement ;
up:attribution _:136560 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:136594 a rdf:Statement ;
up:attribution _:136561 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:136595 a rdf:Statement ;
up:attribution _:136562 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004141 .
_:136596 a rdf:Statement ;
up:attribution _:136563 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:136597 a rdf:Statement ;
up:attribution _:136564 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009102 .
_:136598 a rdf:Statement ;
up:source unirule:MF_00336 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:136599 a rdf:Statement ;
up:attribution _:136565 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:136600 a rdf:Statement ;
up:source unirule:MF_00336 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:136601 a rdf:Statement ;
up:attribution _:136566 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:136602 a rdf:Statement ;
up:source unirule:MF_00336 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:136603 a rdf:Statement ;
up:attribution _:136567 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:136604 a rdf:Statement ;
up:source unirule:MF_00336 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:136605 a rdf:Statement ;
up:attribution _:136568 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:136606 a rdf:Statement ;
up:source unirule:MF_00336 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:136607 a rdf:Statement ;
up:attribution _:136569 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:136608 a rdf:Statement ;
up:source unirule:MF_00336 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:136609 a rdf:Statement ;
up:attribution _:136570 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:136610 a rdf:Statement ;
up:source unirule:MF_00336 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:136611 a rdf:Statement ;
up:attribution _:136571 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:136612 a rdf:Statement ;
up:source unirule:MF_00336 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:136613 a rdf:Statement ;
up:attribution _:136572 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:136614 a rdf:Statement ;
up:source unirule:MF_00336 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:136615 a rdf:Statement ;
up:attribution _:136573 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:136616 a rdf:Statement ;
up:source unirule:MF_00336 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:136617 a rdf:Statement ;
up:attribution _:136574 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:136618 a rdf:Statement ;
up:source unirule:MF_00336 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:136619 a rdf:Statement ;
up:attribution _:136575 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00336
#Rule MF_00336 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon90 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00336 .
?thisOrganism rdfs:subClassOf+ ?supertaxon90 .
BIND(URI(CONCAT(STR(?this), '#MF_00336a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionP1300096 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1300098 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13000MF_0033691 .
?templateMotifSequenceMatchRegionP1300096 faldo:begin ?templateMotifSequenceMatchBeginP1300097 .
?templateMotifSequenceMatchBeginP1300097 faldo:position ?templateMotifSequenceMatchBeginPositionP1300092 ;
faldo:reference isoform:P13000-1 .
?templateMotifSequenceProfileAlignmentOperationP1300098 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00336102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13000MF_0033693 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00336101 .
?targetMotifMatchRegionMatchBeginMF_00336101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0033694 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00336102 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_0033691, 1, (STRLEN(?templateMotifCigarP13000MF_0033691) - STRLEN(REPLACE(?templateMotifCigarP13000MF_0033691, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP1300092) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_0033693, 1, (STRLEN(?targetMotifMatchCigarP13000MF_0033693) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_0033693, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_0033693, 1, (STRLEN(?targetMotifMatchCigarP13000MF_0033693) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_0033693, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0033694) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_0033691, 1, (STRLEN(?templateMotifCigarP13000MF_0033691) - STRLEN(REPLACE(?templateMotifCigarP13000MF_0033691, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP1300092) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_0033693, 1, (STRLEN(?targetMotifMatchCigarP13000MF_0033693) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_0033693, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_0033693, 1, (STRLEN(?targetMotifMatchCigarP13000MF_0033693) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_0033693, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0033694) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER (REGEX('[EDNSG][VAILSC]GK[TS][VLTIYFH]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP13000113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13000115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13000MF_00336108 .
?templateMotifSequenceMatchRegionP13000113 faldo:begin ?templateMotifSequenceMatchBeginP13000114 .
?templateMotifSequenceMatchBeginP13000114 faldo:position ?templateMotifSequenceMatchBeginPositionP13000109 ;
faldo:reference isoform:P13000-1 .
?templateMotifSequenceProfileAlignmentOperationP13000115 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00336119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13000MF_00336110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00336118 .
?targetMotifMatchRegionMatchBeginMF_00336118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00336111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00336119 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336108, 1, (STRLEN(?templateMotifCigarP13000MF_00336108) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336108, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP13000109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336110, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336110) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336110, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336110) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00336111) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336108, 1, (STRLEN(?templateMotifCigarP13000MF_00336108) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336108, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionP13000109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336110, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336110) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336110, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336110) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_00336111) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER (REGEX('E[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionP13000130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13000132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13000MF_00336125 .
?templateMotifSequenceMatchRegionP13000130 faldo:begin ?templateMotifSequenceMatchBeginP13000131 .
?templateMotifSequenceMatchBeginP13000131 faldo:position ?templateMotifSequenceMatchBeginPositionP13000126 ;
faldo:reference isoform:P13000-1 .
?templateMotifSequenceProfileAlignmentOperationP13000132 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00336136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13000MF_00336127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00336135 .
?targetMotifMatchRegionMatchBeginMF_00336135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00336128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00336136 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336125, 1, (STRLEN(?templateMotifCigarP13000MF_00336125) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336125, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP13000126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336127, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336127) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336127, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336127) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_00336128) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336125, 1, (STRLEN(?templateMotifCigarP13000MF_00336125) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336125, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP13000126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336127, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336127) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336127, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336127) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_00336128) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER (REGEX('[NSMVILG][DEHRQTNCSMK]', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionP13000147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13000149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13000MF_00336142 .
?templateMotifSequenceMatchRegionP13000147 faldo:begin ?templateMotifSequenceMatchBeginP13000148 .
?templateMotifSequenceMatchBeginP13000148 faldo:position ?templateMotifSequenceMatchBeginPositionP13000143 ;
faldo:reference isoform:P13000-1 .
?templateMotifSequenceProfileAlignmentOperationP13000149 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00336153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13000MF_00336144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00336152 .
?targetMotifMatchRegionMatchBeginMF_00336152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00336145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00336153 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336142, 1, (STRLEN(?templateMotifCigarP13000MF_00336142) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336142, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP13000143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336144, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336144) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336144, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336144) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_00336145) - 1) AS ?thisPositionOn39) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336142, 1, (STRLEN(?templateMotifCigarP13000MF_00336142) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336142, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionP13000143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336144, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336144) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336144, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336144) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_00336145) - 1) AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER (REGEX('[PA][ARNDCQEGHILKMFPSTWYVBZJUOX][LIVSTG]', SUBSTR(?thisSequenceValue, ?thisPositionOn39, (?thisPositionOn40 - ?thisPositionOn39)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP13000164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13000166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13000MF_00336159 .
?templateMotifSequenceMatchRegionP13000164 faldo:begin ?templateMotifSequenceMatchBeginP13000165 .
?templateMotifSequenceMatchBeginP13000165 faldo:position ?templateMotifSequenceMatchBeginPositionP13000160 ;
faldo:reference isoform:P13000-1 .
?templateMotifSequenceProfileAlignmentOperationP13000166 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00336170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13000MF_00336161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00336169 .
?targetMotifMatchRegionMatchBeginMF_00336169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00336162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00336170 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336159, 1, (STRLEN(?templateMotifCigarP13000MF_00336159) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336159, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP13000160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336161, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336161) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336161, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336161) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_00336162) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP13000179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13000181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13000MF_00336174 .
?templateMotifSequenceMatchRegionP13000179 faldo:begin ?templateMotifSequenceMatchBeginP13000180 .
?templateMotifSequenceMatchBeginP13000180 faldo:position ?templateMotifSequenceMatchBeginPositionP13000175 ;
faldo:reference isoform:P13000-1 .
?templateMotifSequenceProfileAlignmentOperationP13000181 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00336185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13000MF_00336176 .
?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00336184 .
?targetMotifMatchRegionMatchBeginMF_00336184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00336177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00336185 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336174, 1, (STRLEN(?templateMotifCigarP13000MF_00336174) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336174, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP13000175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336176, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336176) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336176, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336176) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_00336177) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionP13000194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13000196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13000MF_00336189 .
?templateMotifSequenceMatchRegionP13000194 faldo:begin ?templateMotifSequenceMatchBeginP13000195 .
?templateMotifSequenceMatchBeginP13000195 faldo:position ?templateMotifSequenceMatchBeginPositionP13000190 ;
faldo:reference isoform:P13000-1 .
?templateMotifSequenceProfileAlignmentOperationP13000196 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00336200 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13000MF_00336191 .
?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00336199 .
?targetMotifMatchRegionMatchBeginMF_00336199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00336192 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00336200 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336189, 1, (STRLEN(?templateMotifCigarP13000MF_00336189) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336189, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP13000190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336191, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336191) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336191, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336191) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_00336192) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t203) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER (REGEX('[DNCRHK]', SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionP13000209 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13000211 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13000MF_00336204 .
?templateMotifSequenceMatchRegionP13000209 faldo:begin ?templateMotifSequenceMatchBeginP13000210 .
?templateMotifSequenceMatchBeginP13000210 faldo:position ?templateMotifSequenceMatchBeginPositionP13000205 ;
faldo:reference isoform:P13000-1 .
?templateMotifSequenceProfileAlignmentOperationP13000211 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00336215 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13000MF_00336206 .
?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00336214 .
?targetMotifMatchRegionMatchBeginMF_00336214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00336207 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00336215 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336204, 1, (STRLEN(?templateMotifCigarP13000MF_00336204) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336204, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP13000205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336206, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336206) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336206, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336206) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_00336207) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionP13000224 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13000226 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13000MF_00336219 .
?templateMotifSequenceMatchRegionP13000224 faldo:begin ?templateMotifSequenceMatchBeginP13000225 .
?templateMotifSequenceMatchBeginP13000225 faldo:position ?templateMotifSequenceMatchBeginPositionP13000220 ;
faldo:reference isoform:P13000-1 .
?templateMotifSequenceProfileAlignmentOperationP13000226 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00336230 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13000MF_00336221 .
?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00336229 .
?targetMotifMatchRegionMatchBeginMF_00336229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00336222 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00336230 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336219, 1, (STRLEN(?templateMotifCigarP13000MF_00336219) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336219, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP13000220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336221, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336221) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336221, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336221) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_00336222) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse71) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionP13000239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13000241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13000MF_00336234 .
?templateMotifSequenceMatchRegionP13000239 faldo:begin ?templateMotifSequenceMatchBeginP13000240 .
?templateMotifSequenceMatchBeginP13000240 faldo:position ?templateMotifSequenceMatchBeginPositionP13000235 ;
faldo:reference isoform:P13000-1 .
?templateMotifSequenceProfileAlignmentOperationP13000241 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00336245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13000MF_00336236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00336244 .
?targetMotifMatchRegionMatchBeginMF_00336244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00336237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00336245 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336234, 1, (STRLEN(?templateMotifCigarP13000MF_00336234) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336234, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP13000235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336236, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336236) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336236, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336236) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_00336237) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs1t248) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionP13000254 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13000256 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13000MF_00336249 .
?templateMotifSequenceMatchRegionP13000254 faldo:begin ?templateMotifSequenceMatchBeginP13000255 .
?templateMotifSequenceMatchBeginP13000255 faldo:position ?templateMotifSequenceMatchBeginPositionP13000250 ;
faldo:reference isoform:P13000-1 .
?templateMotifSequenceProfileAlignmentOperationP13000256 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00336260 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13000MF_00336251 .
?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00336259 .
?targetMotifMatchRegionMatchBeginMF_00336259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00336252 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00336260 edam:has_input signature:MF_00336 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13000MF_00336249, 1, (STRLEN(?templateMotifCigarP13000MF_00336249) - STRLEN(REPLACE(?templateMotifCigarP13000MF_00336249, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP13000250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13000MF_00336251, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336251) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13000MF_00336251, 1, (STRLEN(?targetMotifMatchCigarP13000MF_00336251) - STRLEN(REPLACE(?targetMotifMatchCigarP13000MF_00336251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) .
BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_00336252) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs1t263) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) .
FILTER (REGEX('[ENQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00336a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
}
"xsd:string |
