| http://purl.uniprot.org/unirules/MF_00419#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:164708 up:source unirule:MF_00419 .
_:164709 up:source unirule:MF_00419 .
_:164710 up:source unirule:MF_00419 .
_:164711 up:source unirule:MF_00419 .
_:164712 up:source unirule:MF_00419 .
_:164713 up:source unirule:MF_00419 .
_:164714 up:source unirule:MF_00419 .
_:164715 up:source unirule:MF_00419 .
_:164716 up:source unirule:MF_00419 .
_:164717 up:source unirule:MF_00419 .
_:164718 up:source unirule:MF_00419 .
_:164719 up:source unirule:MF_00419 .
_:164720 up:source unirule:MF_00419 .
_:164721 up:source unirule:MF_00419 .
_:164722 up:source unirule:MF_00419 .
_:164723 up:source unirule:MF_00419 .
_:164724 up:source unirule:MF_00419 .
_:164725 up:source unirule:MF_00419 .
_:164726 up:source unirule:MF_00419 .
_:164727 up:source unirule:MF_00419 .
_:164728 up:source unirule:MF_00419 .
_:164729 up:source unirule:MF_00419 .
_:164730 up:source unirule:MF_00419 .
_:164731 up:source unirule:MF_00419 .
_:164732 up:source unirule:MF_00419 .
_:164733 up:source unirule:MF_00419 .
_:164734 up:source unirule:MF_00419 .
_:164735 up:source unirule:MF_00419 .
_:164736 up:source unirule:MF_00419 .
_:164737 up:source unirule:MF_00419 .
_:164738 up:source unirule:MF_00419 .
_:164739 up:source unirule:MF_00419 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0004642 ,
GO:0005524 ,
GO:0005737 ,
GO:0006189 ,
keyword:315 ,
keyword:436 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:658 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.5.3' ;
up:fullName 'Phosphoribosylformylglycinamidine synthase' ;
up:shortName 'FGAM synthase' ,
'FGAMS' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Formylglycinamide ribonucleotide amidotransferase' ;
up:shortName 'FGAR amidotransferase' ,
'FGAR-AT' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'purL' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 1/2.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'In the N-terminal section; belongs to the FGAMS family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:30616 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:30616 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Active_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Active_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:18420 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:18420 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:18420 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:18420 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf chebi:30616 .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf chebi:30616 .
_:164740 a rdf:Statement ;
up:attribution _:164708 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:164741 a rdf:Statement ;
up:attribution _:164709 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:164742 a rdf:Statement ;
up:attribution _:164710 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:164743 a rdf:Statement ;
up:attribution _:164711 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:164744 a rdf:Statement ;
up:attribution _:164712 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:164745 a rdf:Statement ;
up:attribution _:164713 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:164746 a rdf:Statement ;
up:attribution _:164714 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:164747 a rdf:Statement ;
up:attribution _:164715 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:164748 a rdf:Statement ;
up:attribution _:164716 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:164749 a rdf:Statement ;
up:attribution _:164717 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:164750 a rdf:Statement ;
up:attribution _:164718 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:164751 a rdf:Statement ;
up:attribution _:164719 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:315 .
_:164752 a rdf:Statement ;
up:attribution _:164720 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:164753 a rdf:Statement ;
up:attribution _:164721 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:164754 a rdf:Statement ;
up:attribution _:164722 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:164755 a rdf:Statement ;
up:attribution _:164723 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:164756 a rdf:Statement ;
up:attribution _:164724 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:658 .
_:164757 a rdf:Statement ;
up:attribution _:164725 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:164758 a rdf:Statement ;
up:attribution _:164726 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004642 .
_:164759 a rdf:Statement ;
up:attribution _:164727 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006189 .
_:164760 a rdf:Statement ;
up:attribution _:164728 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:164761 a rdf:Statement ;
up:source unirule:MF_00419 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:164762 a rdf:Statement ;
up:attribution _:164729 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:164763 a rdf:Statement ;
up:source unirule:MF_00419 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:164764 a rdf:Statement ;
up:attribution _:164730 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:164765 a rdf:Statement ;
up:source unirule:MF_00419 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:164766 a rdf:Statement ;
up:attribution _:164731 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:164767 a rdf:Statement ;
up:source unirule:MF_00419 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:164768 a rdf:Statement ;
up:attribution _:164732 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:164769 a rdf:Statement ;
up:source unirule:MF_00419 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:164770 a rdf:Statement ;
up:attribution _:164733 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:164771 a rdf:Statement ;
up:source unirule:MF_00419 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:164772 a rdf:Statement ;
up:attribution _:164734 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:164773 a rdf:Statement ;
up:source unirule:MF_00419 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:164774 a rdf:Statement ;
up:attribution _:164735 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:164775 a rdf:Statement ;
up:source unirule:MF_00419 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:164776 a rdf:Statement ;
up:attribution _:164736 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:164777 a rdf:Statement ;
up:source unirule:MF_00419 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:164778 a rdf:Statement ;
up:attribution _:164737 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:164779 a rdf:Statement ;
up:source unirule:MF_00419 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:164780 a rdf:Statement ;
up:attribution _:164738 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:164781 a rdf:Statement ;
up:source unirule:MF_00419 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:164782 a rdf:Statement ;
up:attribution _:164739 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00419
#Rule MF_00419 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00419 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00419a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP7488190 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7488192 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP74881MF_0041985 .
?templateMotifSequenceMatchRegionP7488190 faldo:begin ?templateMotifSequenceMatchBeginP7488191 .
?templateMotifSequenceMatchBeginP7488191 faldo:position ?templateMotifSequenceMatchBeginPositionP7488186 ;
faldo:reference isoform:P74881-1 .
?templateMotifSequenceProfileAlignmentOperationP7488192 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0041996 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP74881MF_0041987 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0041995 .
?targetMotifMatchRegionMatchBeginMF_0041995 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0041988 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0041996 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_0041985, 1, (STRLEN(?templateMotifCigarP74881MF_0041985) - STRLEN(REPLACE(?templateMotifCigarP74881MF_0041985, CONCAT('^(?:-*[^-]){', STR(((307 - ?templateMotifSequenceMatchBeginPositionP7488186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_0041987, 1, (STRLEN(?targetMotifMatchCigarP74881MF_0041987) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_0041987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_0041987, 1, (STRLEN(?targetMotifMatchCigarP74881MF_0041987) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_0041987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0041988) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_0041985, 1, (STRLEN(?templateMotifCigarP74881MF_0041985) - STRLEN(REPLACE(?templateMotifCigarP74881MF_0041985, CONCAT('^(?:-*[^-]){', STR(((318 - ?templateMotifSequenceMatchBeginPositionP7488186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_0041987, 1, (STRLEN(?targetMotifMatchCigarP74881MF_0041987) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_0041987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_0041987, 1, (STRLEN(?targetMotifMatchCigarP74881MF_0041987) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_0041987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0041988) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('GA[SA]TG[SAVI]GGEIRD', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP74881107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP74881109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP74881MF_00419102 .
?templateMotifSequenceMatchRegionP74881107 faldo:begin ?templateMotifSequenceMatchBeginP74881108 .
?templateMotifSequenceMatchBeginP74881108 faldo:position ?templateMotifSequenceMatchBeginPositionP74881103 ;
faldo:reference isoform:P74881-1 .
?templateMotifSequenceProfileAlignmentOperationP74881109 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00419113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP74881MF_00419104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00419112 .
?targetMotifMatchRegionMatchBeginMF_00419112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00419105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00419113 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_00419102, 1, (STRLEN(?templateMotifCigarP74881MF_00419102) - STRLEN(REPLACE(?templateMotifCigarP74881MF_00419102, CONCAT('^(?:-*[^-]){', STR(((386 - ?templateMotifSequenceMatchBeginPositionP74881103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_00419104, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419104) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_00419104, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419104) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_00419105) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_00419102, 1, (STRLEN(?templateMotifCigarP74881MF_00419102) - STRLEN(REPLACE(?templateMotifCigarP74881MF_00419102, CONCAT('^(?:-*[^-]){', STR(((388 - ?templateMotifSequenceMatchBeginPositionP74881103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_00419104, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419104) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_00419104, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419104) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_00419105) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)) = 'TGY')) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionP74881124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP74881126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP74881MF_00419119 .
?templateMotifSequenceMatchRegionP74881124 faldo:begin ?templateMotifSequenceMatchBeginP74881125 .
?templateMotifSequenceMatchBeginP74881125 faldo:position ?templateMotifSequenceMatchBeginPositionP74881120 ;
faldo:reference isoform:P74881-1 .
?templateMotifSequenceProfileAlignmentOperationP74881126 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00419130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP74881MF_00419121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00419129 .
?targetMotifMatchRegionMatchBeginMF_00419129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00419122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00419130 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_00419119, 1, (STRLEN(?templateMotifCigarP74881MF_00419119) - STRLEN(REPLACE(?templateMotifCigarP74881MF_00419119, CONCAT('^(?:-*[^-]){', STR(((1135 - ?templateMotifSequenceMatchBeginPositionP74881120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_00419121, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419121) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_00419121, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419121) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_00419122) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP74881139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP74881141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP74881MF_00419134 .
?templateMotifSequenceMatchRegionP74881139 faldo:begin ?templateMotifSequenceMatchBeginP74881140 .
?templateMotifSequenceMatchBeginP74881140 faldo:position ?templateMotifSequenceMatchBeginPositionP74881135 ;
faldo:reference isoform:P74881-1 .
?templateMotifSequenceProfileAlignmentOperationP74881141 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00419145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP74881MF_00419136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00419144 .
?targetMotifMatchRegionMatchBeginMF_00419144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00419137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00419145 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_00419134, 1, (STRLEN(?templateMotifCigarP74881MF_00419134) - STRLEN(REPLACE(?templateMotifCigarP74881MF_00419134, CONCAT('^(?:-*[^-]){', STR(((1260 - ?templateMotifSequenceMatchBeginPositionP74881135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_00419136, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419136) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_00419136, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419136) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_00419137) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP74881154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP74881156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP74881MF_00419149 .
?templateMotifSequenceMatchRegionP74881154 faldo:begin ?templateMotifSequenceMatchBeginP74881155 .
?templateMotifSequenceMatchBeginP74881155 faldo:position ?templateMotifSequenceMatchBeginPositionP74881150 ;
faldo:reference isoform:P74881-1 .
?templateMotifSequenceProfileAlignmentOperationP74881156 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00419160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP74881MF_00419151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00419159 .
?targetMotifMatchRegionMatchBeginMF_00419159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00419152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00419160 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_00419149, 1, (STRLEN(?templateMotifCigarP74881MF_00419149) - STRLEN(REPLACE(?templateMotifCigarP74881MF_00419149, CONCAT('^(?:-*[^-]){', STR(((1262 - ?templateMotifSequenceMatchBeginPositionP74881150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_00419151, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419151) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_00419151, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419151) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00419152) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP74881169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP74881171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP74881MF_00419164 .
?templateMotifSequenceMatchRegionP74881169 faldo:begin ?templateMotifSequenceMatchBeginP74881170 .
?templateMotifSequenceMatchBeginP74881170 faldo:position ?templateMotifSequenceMatchBeginPositionP74881165 ;
faldo:reference isoform:P74881-1 .
?templateMotifSequenceProfileAlignmentOperationP74881171 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00419175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP74881MF_00419166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00419174 .
?targetMotifMatchRegionMatchBeginMF_00419174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00419167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00419175 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_00419164, 1, (STRLEN(?templateMotifCigarP74881MF_00419164) - STRLEN(REPLACE(?templateMotifCigarP74881MF_00419164, CONCAT('^(?:-*[^-]){', STR(((679 - ?templateMotifSequenceMatchBeginPositionP74881165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_00419166, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419166) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_00419166, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419166) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_00419167) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionP74881184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP74881186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP74881MF_00419179 .
?templateMotifSequenceMatchRegionP74881184 faldo:begin ?templateMotifSequenceMatchBeginP74881185 .
?templateMotifSequenceMatchBeginP74881185 faldo:position ?templateMotifSequenceMatchBeginPositionP74881180 ;
faldo:reference isoform:P74881-1 .
?templateMotifSequenceProfileAlignmentOperationP74881186 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00419190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP74881MF_00419181 .
?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00419189 .
?targetMotifMatchRegionMatchBeginMF_00419189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00419182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00419190 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_00419179, 1, (STRLEN(?templateMotifCigarP74881MF_00419179) - STRLEN(REPLACE(?templateMotifCigarP74881MF_00419179, CONCAT('^(?:-*[^-]){', STR(((718 - ?templateMotifSequenceMatchBeginPositionP74881180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_00419181, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419181) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_00419181, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419181) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) .
BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_00419182) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t193) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch198 faldo:location ?templateMotifSequenceMatchRegionP74881199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP74881201 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP74881MF_00419194 .
?templateMotifSequenceMatchRegionP74881199 faldo:begin ?templateMotifSequenceMatchBeginP74881200 .
?templateMotifSequenceMatchBeginP74881200 faldo:position ?templateMotifSequenceMatchBeginPositionP74881195 ;
faldo:reference isoform:P74881-1 .
?templateMotifSequenceProfileAlignmentOperationP74881201 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
?targetMotifMatch202 faldo:location ?targetMotifMatchRegionMatch203 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00419205 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP74881MF_00419196 .
?targetMotifMatchRegionMatch203 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00419204 .
?targetMotifMatchRegionMatchBeginMF_00419204 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00419197 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00419205 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_00419194, 1, (STRLEN(?templateMotifCigarP74881MF_00419194) - STRLEN(REPLACE(?templateMotifCigarP74881MF_00419194, CONCAT('^(?:-*[^-]){', STR(((722 - ?templateMotifSequenceMatchBeginPositionP74881195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_00419196, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419196) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_00419196, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419196) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_00419197) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch213 faldo:location ?templateMotifSequenceMatchRegionP74881214 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP74881216 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP74881MF_00419209 .
?templateMotifSequenceMatchRegionP74881214 faldo:begin ?templateMotifSequenceMatchBeginP74881215 .
?templateMotifSequenceMatchBeginP74881215 faldo:position ?templateMotifSequenceMatchBeginPositionP74881210 ;
faldo:reference isoform:P74881-1 .
?templateMotifSequenceProfileAlignmentOperationP74881216 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
?targetMotifMatch217 faldo:location ?targetMotifMatchRegionMatch218 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00419220 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP74881MF_00419211 .
?targetMotifMatchRegionMatch218 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00419219 .
?targetMotifMatchRegionMatchBeginMF_00419219 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00419212 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00419220 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_00419209, 1, (STRLEN(?templateMotifCigarP74881MF_00419209) - STRLEN(REPLACE(?templateMotifCigarP74881MF_00419209, CONCAT('^(?:-*[^-]){', STR(((884 - ?templateMotifSequenceMatchBeginPositionP74881210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_00419211, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419211) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_00419211, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419211) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) .
BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_00419212) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t223) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch228 faldo:location ?templateMotifSequenceMatchRegionP74881229 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP74881231 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP74881MF_00419224 .
?templateMotifSequenceMatchRegionP74881229 faldo:begin ?templateMotifSequenceMatchBeginP74881230 .
?templateMotifSequenceMatchBeginP74881230 faldo:position ?templateMotifSequenceMatchBeginPositionP74881225 ;
faldo:reference isoform:P74881-1 .
?templateMotifSequenceProfileAlignmentOperationP74881231 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
?targetMotifMatch232 faldo:location ?targetMotifMatchRegionMatch233 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00419235 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP74881MF_00419226 .
?targetMotifMatchRegionMatch233 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00419234 .
?targetMotifMatchRegionMatchBeginMF_00419234 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00419227 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00419235 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_00419224, 1, (STRLEN(?templateMotifCigarP74881MF_00419224) - STRLEN(REPLACE(?templateMotifCigarP74881MF_00419224, CONCAT('^(?:-*[^-]){', STR(((678 - ?templateMotifSequenceMatchBeginPositionP74881225) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_00419226, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419226) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_00419226, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419226) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_00419227) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionP74881244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP74881246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP74881MF_00419239 .
?templateMotifSequenceMatchRegionP74881244 faldo:begin ?templateMotifSequenceMatchBeginP74881245 .
?templateMotifSequenceMatchBeginP74881245 faldo:position ?templateMotifSequenceMatchBeginPositionP74881240 ;
faldo:reference isoform:P74881-1 .
?templateMotifSequenceProfileAlignmentOperationP74881246 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00419250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP74881MF_00419241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00419249 .
?targetMotifMatchRegionMatchBeginMF_00419249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00419242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00419250 edam:has_input signature:MF_00419 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP74881MF_00419239, 1, (STRLEN(?templateMotifCigarP74881MF_00419239) - STRLEN(REPLACE(?templateMotifCigarP74881MF_00419239, CONCAT('^(?:-*[^-]){', STR(((886 - ?templateMotifSequenceMatchBeginPositionP74881240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP74881MF_00419241, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419241) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP74881MF_00419241, 1, (STRLEN(?targetMotifMatchCigarP74881MF_00419241) - STRLEN(REPLACE(?targetMotifMatchCigarP74881MF_00419241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_00419242) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs1t253) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00419a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
}
"xsd:string |
