| http://purl.uniprot.org/unirules/MF_00863#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:308344 up:source unirule:MF_00863 .
_:308345 up:source unirule:MF_00863 .
_:308346 up:source unirule:MF_00863 .
_:308347 up:source unirule:MF_00863 .
_:308348 up:source unirule:MF_00863 .
_:308349 up:source unirule:MF_00863 .
_:308350 up:source unirule:MF_00863 .
_:308351 up:source unirule:MF_00863 .
_:308352 up:source unirule:MF_00863 .
_:308353 up:source unirule:MF_00863 .
_:308354 up:source unirule:MF_00863 .
_:308355 up:source unirule:MF_00863 .
_:308356 up:source unirule:MF_00863 .
_:308357 up:source unirule:MF_00863 .
_:308358 up:source unirule:MF_00863 .
_:308359 up:source unirule:MF_00863 .
_:308360 up:source unirule:MF_00863 .
_:308361 up:source unirule:MF_00863 .
_:308362 up:source unirule:MF_00863 .
_:308363 up:source unirule:MF_00863 .
_:308364 up:source unirule:MF_00863 .
_:308365 up:source unirule:MF_00863 .
_:308366 up:source unirule:MF_00863 .
_:308367 up:source unirule:MF_00863 .
_:308368 up:source unirule:MF_00863 .
_:308369 up:source unirule:MF_00863 .
_:308370 up:source unirule:MF_00863 .
_:308371 up:source unirule:MF_00863 .
_:308372 up:source unirule:MF_00863 .
_:308373 up:source unirule:MF_00863 .
_:308374 up:source unirule:MF_00863 .
_:308375 up:source unirule:MF_00863 .
_:308376 up:source unirule:MF_00863 .
_:308377 up:source unirule:MF_00863 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0003677 ,
GO:0003899 ,
GO:0005737 ,
GO:0006351 ,
keyword:238 ,
keyword:240 ,
keyword:479 ,
keyword:548 ,
keyword:804 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.6' ;
up:fullName 'DNA-directed RNA polymerase subunit Rpo1N' ;
rdf:type up:Structured_Name .
?name1 up:fullName "DNA-directed RNA polymerase subunit A'" ;
rdf:type up:Structured_Name .
?gene2 skos:altLabel 'rpoA1' ;
skos:prefLabel 'rpo1N' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Forms the clamp head domain.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Part of the RNA polymerase complex.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment "Belongs to the RNA polymerase beta' chain family." .
?case10 up:classifiedWith GO:0000287 ,
keyword:460 .
?case11 up:classifiedWith GO:0008270 ,
keyword:862 .
?pfs12 up:annotation ?annotation13 ,
?annotation19 ,
?annotation25 ,
?annotation31 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:29105 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:29105 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:29105 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29105 .
?pfs37 up:annotation ?annotation38 ,
?annotation44 ,
?annotation50 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:18420 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:18420 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:18420 .
?pfs56 up:annotation ?annotation57 ,
?annotation63 ,
?annotation69 ,
?annotation75 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:29105 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:29105 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:29105 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:29105 .
_:308378 a rdf:Statement ;
up:attribution _:308344 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:308379 a rdf:Statement ;
up:attribution _:308345 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:308380 a rdf:Statement ;
up:attribution _:308346 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:308381 a rdf:Statement ;
up:attribution _:308347 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:308382 a rdf:Statement ;
up:attribution _:308348 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:308383 a rdf:Statement ;
up:attribution _:308349 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:308384 a rdf:Statement ;
up:attribution _:308350 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:308385 a rdf:Statement ;
up:attribution _:308351 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:308386 a rdf:Statement ;
up:attribution _:308352 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:308387 a rdf:Statement ;
up:attribution _:308353 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:308388 a rdf:Statement ;
up:attribution _:308354 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:240 .
_:308389 a rdf:Statement ;
up:attribution _:308355 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:308390 a rdf:Statement ;
up:attribution _:308356 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:308391 a rdf:Statement ;
up:attribution _:308357 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:308392 a rdf:Statement ;
up:attribution _:308358 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:308393 a rdf:Statement ;
up:attribution _:308359 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:308394 a rdf:Statement ;
up:attribution _:308360 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:308395 a rdf:Statement ;
up:attribution _:308361 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003899 .
_:308396 a rdf:Statement ;
up:attribution _:308362 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006351 .
_:308397 a rdf:Statement ;
up:attribution _:308363 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:308398 a rdf:Statement ;
up:attribution _:308364 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:308399 a rdf:Statement ;
up:attribution _:308365 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:308400 a rdf:Statement ;
up:attribution _:308366 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:308401 a rdf:Statement ;
up:source unirule:MF_00863 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:308402 a rdf:Statement ;
up:attribution _:308367 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:308403 a rdf:Statement ;
up:source unirule:MF_00863 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:308404 a rdf:Statement ;
up:attribution _:308368 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:308405 a rdf:Statement ;
up:source unirule:MF_00863 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:308406 a rdf:Statement ;
up:attribution _:308369 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:308407 a rdf:Statement ;
up:source unirule:MF_00863 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:308408 a rdf:Statement ;
up:attribution _:308370 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:308409 a rdf:Statement ;
up:source unirule:MF_00863 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:308410 a rdf:Statement ;
up:attribution _:308371 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:308411 a rdf:Statement ;
up:source unirule:MF_00863 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:308412 a rdf:Statement ;
up:attribution _:308372 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:308413 a rdf:Statement ;
up:source unirule:MF_00863 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:308414 a rdf:Statement ;
up:attribution _:308373 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:308415 a rdf:Statement ;
up:source unirule:MF_00863 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:308416 a rdf:Statement ;
up:attribution _:308374 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:308417 a rdf:Statement ;
up:source unirule:MF_00863 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:308418 a rdf:Statement ;
up:attribution _:308375 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:308419 a rdf:Statement ;
up:source unirule:MF_00863 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:308420 a rdf:Statement ;
up:attribution _:308376 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:308421 a rdf:Statement ;
up:source unirule:MF_00863 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:308422 a rdf:Statement ;
up:attribution _:308377 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00863
#Rule MF_00863 Created by:? on:2021-06-18 Modified by:Catherine Rivoire on:2025-03-21
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00863 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00863a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00863a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00863a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00863a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00863a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00863a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00863a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionB8YB5386 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationB8YB5388 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarB8YB53MF_0086381 .
?templateMotifSequenceMatchRegionB8YB5386 faldo:begin ?templateMotifSequenceMatchBeginB8YB5387 .
?templateMotifSequenceMatchBeginB8YB5387 faldo:position ?templateMotifSequenceMatchBeginPositionB8YB5382 ;
faldo:reference isoform:B8YB53-1 .
?templateMotifSequenceProfileAlignmentOperationB8YB5388 edam:has_input signature:MF_00863 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0086392 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarB8YB53MF_0086383 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0086391 .
?targetMotifMatchRegionMatchBeginMF_0086391 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0086384 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0086392 edam:has_input signature:MF_00863 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_0086381, 1, (STRLEN(?templateMotifCigarB8YB53MF_0086381) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_0086381, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionB8YB5382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0086384) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_0086381, 1, (STRLEN(?templateMotifCigarB8YB53MF_0086381) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_0086381, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionB8YB5382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0086384) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_0086381, 1, (STRLEN(?templateMotifCigarB8YB53MF_0086381) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_0086381, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionB8YB5382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0086384) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_0086381, 1, (STRLEN(?templateMotifCigarB8YB53MF_0086381) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_0086381, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionB8YB5382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0086384) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionB8YB53110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationB8YB53112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarB8YB53MF_00863105 .
?templateMotifSequenceMatchRegionB8YB53110 faldo:begin ?templateMotifSequenceMatchBeginB8YB53111 .
?templateMotifSequenceMatchBeginB8YB53111 faldo:position ?templateMotifSequenceMatchBeginPositionB8YB53106 ;
faldo:reference isoform:B8YB53-1 .
?templateMotifSequenceProfileAlignmentOperationB8YB53112 edam:has_input signature:MF_00863 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00863116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarB8YB53MF_00863107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00863115 .
?targetMotifMatchRegionMatchBeginMF_00863115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00863108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00863116 edam:has_input signature:MF_00863 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_3) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863105, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863105) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863105, CONCAT('^(?:-*[^-]){', STR(((456 - ?templateMotifSequenceMatchBeginPositionB8YB53106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863107, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863107) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863107, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863107) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00863108) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863105, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863105) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863105, CONCAT('^(?:-*[^-]){', STR(((458 - ?templateMotifSequenceMatchBeginPositionB8YB53106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863107, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863107) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863107, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863107) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00863108) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs2t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863105, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863105) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863105, CONCAT('^(?:-*[^-]){', STR(((460 - ?templateMotifSequenceMatchBeginPositionB8YB53106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863107, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863107) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863107, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863107) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00863108) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'D')) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionB8YB53131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationB8YB53133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarB8YB53MF_00863126 .
?templateMotifSequenceMatchRegionB8YB53131 faldo:begin ?templateMotifSequenceMatchBeginB8YB53132 .
?templateMotifSequenceMatchBeginB8YB53132 faldo:position ?templateMotifSequenceMatchBeginPositionB8YB53127 ;
faldo:reference isoform:B8YB53-1 .
?templateMotifSequenceProfileAlignmentOperationB8YB53133 edam:has_input signature:MF_00863 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00863137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarB8YB53MF_00863128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00863136 .
?targetMotifMatchRegionMatchBeginMF_00863136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00863129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00863137 edam:has_input signature:MF_00863 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863126, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863126) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863126, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionB8YB53127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00863129) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs3t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863126, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863126) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863126, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionB8YB53127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00863129) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs3t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863126, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863126) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863126, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionB8YB53127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00863129) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs3t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863126, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863126) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863126, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionB8YB53127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00863129) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs3t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'C')) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag150) .
}
BIND(IF(BOUND(?tagFTGRP_3), ?caseWithTag150, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag151) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag151, ?UNBOUND_VARIABLE) AS ?case11) .
}
"xsd:string |
