| http://purl.uniprot.org/unirules/MF_00987#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:344622 up:source unirule:MF_00987 .
_:344623 up:source unirule:MF_00987 .
_:344624 up:source unirule:MF_00987 .
_:344625 up:source unirule:MF_00987 .
_:344626 up:source unirule:MF_00987 .
_:344627 up:source unirule:MF_00987 .
_:344628 up:source unirule:MF_00987 .
_:344629 up:source unirule:MF_00987 .
_:344630 up:source unirule:MF_00987 .
_:344631 up:source unirule:MF_00987 .
_:344632 up:source unirule:MF_00987 .
_:344633 up:source unirule:MF_00987 .
_:344634 up:source unirule:MF_00987 .
_:344635 up:source unirule:MF_00987 .
_:344636 up:source unirule:MF_00987 .
_:344637 up:source unirule:MF_00987 .
_:344638 up:source unirule:MF_00987 .
_:344639 up:source unirule:MF_00987 .
_:344640 up:source unirule:MF_00987 .
_:344641 up:source unirule:MF_00987 .
_:344642 up:source unirule:MF_00987 .
_:344643 up:source unirule:MF_00987 .
_:344644 up:source unirule:MF_00987 .
_:344645 up:source unirule:MF_00987 .
_:344646 up:source unirule:MF_00987 .
_:344647 up:source unirule:MF_00987 .
_:344648 up:source unirule:MF_00987 .
_:344649 up:source unirule:MF_00987 .
_:344650 up:source unirule:MF_00987 .
_:344651 up:source unirule:MF_00987 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0008270 ,
GO:0008738 ,
GO:0042355 ,
keyword:119 ,
keyword:294 ,
keyword:456 ,
keyword:479 ,
keyword:54 ,
keyword:862 .
?gene0 skos:prefLabel 'fucA' .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Involved in the degradation of L-fucose and D-arabinose. Catalyzes the reversible cleavage of L-fuculose 1-phosphate (Fuc1P) to yield dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 zinc ion per subunit.' .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; L-fucose degradation; L-lactaldehyde and glycerone phosphate from L-fucose: step 3/3.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aldolase class II family. AraD/FucA subfamily.' .
?case8 up:alternativeName ?name10 ,
?name11 ;
up:recommendedName ?name9 .
?name9 up:ecName '4.1.2.17' ;
up:fullName 'L-fuculose phosphate aldolase' ;
rdf:type up:Structured_Name .
?name10 up:fullName 'D-ribulose-phosphate aldolase' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'L-fuculose-1-phosphate aldolase' ;
rdf:type up:Structured_Name .
?pfs13 up:annotation ?annotation14 ,
?annotation20 ,
?annotation26 ,
?annotation32 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:29105 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:29105 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:29105 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:29105 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf ?molecule43 .
?molecule43 rdfs:label 'substrate' .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf ?molecule51 .
?molecule51 rdfs:label 'substrate' .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf ?molecule59 .
?molecule59 rdfs:label 'substrate' .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Plays a key role in the stabilization of the transition state and positioning the aldehyde component' .
?pfsb70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Plays a key role in the stabilization of the transition state and positioning the aldehyde component' .
?pfsb76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Plays a key role in the stabilization of the transition state and positioning the aldehyde component' .
?pfsb82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
_:344652 a rdf:Statement ;
up:attribution _:344622 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:344653 a rdf:Statement ;
up:attribution _:344623 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:344654 a rdf:Statement ;
up:attribution _:344624 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:344655 a rdf:Statement ;
up:attribution _:344625 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:344656 a rdf:Statement ;
up:attribution _:344626 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:344657 a rdf:Statement ;
up:attribution _:344627 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:344658 a rdf:Statement ;
up:attribution _:344628 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:344659 a rdf:Statement ;
up:attribution _:344629 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:54 .
_:344660 a rdf:Statement ;
up:attribution _:344630 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:344661 a rdf:Statement ;
up:attribution _:344631 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:294 .
_:344662 a rdf:Statement ;
up:attribution _:344632 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:344663 a rdf:Statement ;
up:attribution _:344633 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:344664 a rdf:Statement ;
up:attribution _:344634 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:344665 a rdf:Statement ;
up:attribution _:344635 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008738 .
_:344666 a rdf:Statement ;
up:attribution _:344636 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:344667 a rdf:Statement ;
up:attribution _:344637 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042355 .
_:344668 a rdf:Statement ;
up:attribution _:344638 ;
rdf:subject ?case8 ;
rdf:predicate up:recommendedName ;
rdf:object ?name9 .
_:344669 a rdf:Statement ;
up:attribution _:344639 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:344670 a rdf:Statement ;
up:attribution _:344640 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:344671 a rdf:Statement ;
up:source unirule:MF_00987 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:344672 a rdf:Statement ;
up:attribution _:344641 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:344673 a rdf:Statement ;
up:source unirule:MF_00987 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:344674 a rdf:Statement ;
up:attribution _:344642 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:344675 a rdf:Statement ;
up:source unirule:MF_00987 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:344676 a rdf:Statement ;
up:attribution _:344643 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:344677 a rdf:Statement ;
up:source unirule:MF_00987 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:344678 a rdf:Statement ;
up:attribution _:344644 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:344679 a rdf:Statement ;
up:source unirule:MF_00987 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:344680 a rdf:Statement ;
up:attribution _:344645 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:344681 a rdf:Statement ;
up:source unirule:MF_00987 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:344682 a rdf:Statement ;
up:attribution _:344646 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:344683 a rdf:Statement ;
up:source unirule:MF_00987 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:344684 a rdf:Statement ;
up:attribution _:344647 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:344685 a rdf:Statement ;
up:source unirule:MF_00987 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:344686 a rdf:Statement ;
up:attribution _:344648 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:344687 a rdf:Statement ;
up:source unirule:MF_00987 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:344688 a rdf:Statement ;
up:attribution _:344649 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:344689 a rdf:Statement ;
up:source unirule:MF_00987 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:344690 a rdf:Statement ;
up:attribution _:344650 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:344691 a rdf:Statement ;
up:source unirule:MF_00987 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:344692 a rdf:Statement ;
up:attribution _:344651 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00987
#Rule MF_00987 Created by:? on:2014-01-22 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00987 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00987a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionP0AB8791 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AB8793 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AB87MF_0098786 .
?templateMotifSequenceMatchRegionP0AB8791 faldo:begin ?templateMotifSequenceMatchBeginP0AB8792 .
?templateMotifSequenceMatchBeginP0AB8792 faldo:position ?templateMotifSequenceMatchBeginPositionP0AB8787 ;
faldo:reference isoform:P0AB87-1 .
?templateMotifSequenceProfileAlignmentOperationP0AB8793 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0098797 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AB87MF_0098788 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0098796 .
?targetMotifMatchRegionMatchBeginMF_0098796 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0098789 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0098797 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_0098786, 1, (STRLEN(?templateMotifCigarP0AB87MF_0098786) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_0098786, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP0AB8787) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_0098788, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_0098788) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_0098788, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_0098788, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_0098788) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_0098788, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0098789) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_0098786, 1, (STRLEN(?templateMotifCigarP0AB87MF_0098786) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_0098786, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP0AB8787) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_0098788, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_0098788) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_0098788, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_0098788, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_0098788) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_0098788, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0098789) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_0098786, 1, (STRLEN(?templateMotifCigarP0AB87MF_0098786) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_0098786, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP0AB8787) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_0098788, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_0098788) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_0098788, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_0098788, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_0098788) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_0098788, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0098789) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_0098786, 1, (STRLEN(?templateMotifCigarP0AB87MF_0098786) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_0098786, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP0AB8787) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_0098788, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_0098788) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_0098788, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_0098788, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_0098788) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_0098788, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0098789) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'H')) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP0AB87115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AB87117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AB87MF_00987110 .
?templateMotifSequenceMatchRegionP0AB87115 faldo:begin ?templateMotifSequenceMatchBeginP0AB87116 .
?templateMotifSequenceMatchBeginP0AB87116 faldo:position ?templateMotifSequenceMatchBeginPositionP0AB87111 ;
faldo:reference isoform:P0AB87-1 .
?templateMotifSequenceProfileAlignmentOperationP0AB87117 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00987121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AB87MF_00987112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00987120 .
?targetMotifMatchRegionMatchBeginMF_00987120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00987113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00987121 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_00987110, 1, (STRLEN(?templateMotifCigarP0AB87MF_00987110) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_00987110, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionP0AB87111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987112, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987112) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987112, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987112) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_00987113) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_00987110, 1, (STRLEN(?templateMotifCigarP0AB87MF_00987110) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_00987110, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP0AB87111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987112, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987112) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987112, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987112) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_00987113) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)) = 'GN')) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP0AB87132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AB87134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AB87MF_00987127 .
?templateMotifSequenceMatchRegionP0AB87132 faldo:begin ?templateMotifSequenceMatchBeginP0AB87133 .
?templateMotifSequenceMatchBeginP0AB87133 faldo:position ?templateMotifSequenceMatchBeginPositionP0AB87128 ;
faldo:reference isoform:P0AB87-1 .
?templateMotifSequenceProfileAlignmentOperationP0AB87134 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00987138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AB87MF_00987129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00987137 .
?targetMotifMatchRegionMatchBeginMF_00987137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00987130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00987138 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_00987127, 1, (STRLEN(?templateMotifCigarP0AB87MF_00987127) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_00987127, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP0AB87128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987129, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987129) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987129, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987129) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_00987130) - 1) AS ?thisPositionOn52) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_00987127, 1, (STRLEN(?templateMotifCigarP0AB87MF_00987127) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_00987127, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP0AB87128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987129, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987129) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987129, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987129) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00987130) - 1) AS ?thisPositionOn53) .
BIND(?this AS ?pfs2t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) .
FILTER (REGEX('[TS]G', SUBSTR(?thisSequenceValue, ?thisPositionOn52, (?thisPositionOn53 - ?thisPositionOn52)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP0AB87149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AB87151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AB87MF_00987144 .
?templateMotifSequenceMatchRegionP0AB87149 faldo:begin ?templateMotifSequenceMatchBeginP0AB87150 .
?templateMotifSequenceMatchBeginP0AB87150 faldo:position ?templateMotifSequenceMatchBeginPositionP0AB87145 ;
faldo:reference isoform:P0AB87-1 .
?templateMotifSequenceProfileAlignmentOperationP0AB87151 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00987155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AB87MF_00987146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00987154 .
?targetMotifMatchRegionMatchBeginMF_00987154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00987147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00987155 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_00987144, 1, (STRLEN(?templateMotifCigarP0AB87MF_00987144) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_00987144, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP0AB87145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987146, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987146) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987146, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987146) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_00987147) - 1) AS ?thisPositionOn60) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_00987144, 1, (STRLEN(?templateMotifCigarP0AB87MF_00987144) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_00987144, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP0AB87145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987146, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987146) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987146, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987146) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_00987147) - 1) AS ?thisPositionOn61) .
BIND(?this AS ?pfs2t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, (?thisPositionOn61 - ?thisPositionOn60)) = 'SS')) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP0AB87166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AB87168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AB87MF_00987161 .
?templateMotifSequenceMatchRegionP0AB87166 faldo:begin ?templateMotifSequenceMatchBeginP0AB87167 .
?templateMotifSequenceMatchBeginP0AB87167 faldo:position ?templateMotifSequenceMatchBeginPositionP0AB87162 ;
faldo:reference isoform:P0AB87-1 .
?templateMotifSequenceProfileAlignmentOperationP0AB87168 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00987172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AB87MF_00987163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00987171 .
?targetMotifMatchRegionMatchBeginMF_00987171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00987164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00987172 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_00987161, 1, (STRLEN(?templateMotifCigarP0AB87MF_00987161) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_00987161, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP0AB87162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987163, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987163) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987163, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987163) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_00987164) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs2t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionP0AB87181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AB87183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AB87MF_00987176 .
?templateMotifSequenceMatchRegionP0AB87181 faldo:begin ?templateMotifSequenceMatchBeginP0AB87182 .
?templateMotifSequenceMatchBeginP0AB87182 faldo:position ?templateMotifSequenceMatchBeginPositionP0AB87177 ;
faldo:reference isoform:P0AB87-1 .
?templateMotifSequenceProfileAlignmentOperationP0AB87183 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00987187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AB87MF_00987178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00987186 .
?targetMotifMatchRegionMatchBeginMF_00987186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00987179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00987187 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_00987176, 1, (STRLEN(?templateMotifCigarP0AB87MF_00987176) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_00987176, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP0AB87177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987178, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987178) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987178, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987178) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_00987179) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs2t190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP0AB87196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AB87198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AB87MF_00987191 .
?templateMotifSequenceMatchRegionP0AB87196 faldo:begin ?templateMotifSequenceMatchBeginP0AB87197 .
?templateMotifSequenceMatchBeginP0AB87197 faldo:position ?templateMotifSequenceMatchBeginPositionP0AB87192 ;
faldo:reference isoform:P0AB87-1 .
?templateMotifSequenceProfileAlignmentOperationP0AB87198 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00987202 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AB87MF_00987193 .
?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00987201 .
?targetMotifMatchRegionMatchBeginMF_00987201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00987194 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00987202 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_00987191, 1, (STRLEN(?templateMotifCigarP0AB87MF_00987191) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_00987191, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP0AB87192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987193, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987193) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987193, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987193) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_00987194) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs2t205) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionP0AB87211 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AB87213 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AB87MF_00987206 .
?templateMotifSequenceMatchRegionP0AB87211 faldo:begin ?templateMotifSequenceMatchBeginP0AB87212 .
?templateMotifSequenceMatchBeginP0AB87212 faldo:position ?templateMotifSequenceMatchBeginPositionP0AB87207 ;
faldo:reference isoform:P0AB87-1 .
?templateMotifSequenceProfileAlignmentOperationP0AB87213 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00987217 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AB87MF_00987208 .
?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00987216 .
?targetMotifMatchRegionMatchBeginMF_00987216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00987209 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00987217 edam:has_input signature:MF_00987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AB87MF_00987206, 1, (STRLEN(?templateMotifCigarP0AB87MF_00987206) - STRLEN(REPLACE(?templateMotifCigarP0AB87MF_00987206, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP0AB87207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987208, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987208) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AB87MF_00987208, 1, (STRLEN(?targetMotifMatchCigarP0AB87MF_00987208) - STRLEN(REPLACE(?targetMotifMatchCigarP0AB87MF_00987208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_00987209) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs2t220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag221) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_00987a11')) AS ?name11) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag221, ?UNBOUND_VARIABLE) AS ?case8) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag222) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag222, ?UNBOUND_VARIABLE) AS ?case12) .
}
"xsd:string |
