| http://purl.uniprot.org/unirules/MF_01133#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:395451 up:source unirule:MF_01133 .
_:395452 up:source unirule:MF_01133 .
_:395453 up:source unirule:MF_01133 .
_:395454 up:source unirule:MF_01133 .
_:395455 up:source unirule:MF_01133 .
_:395456 up:source unirule:MF_01133 .
_:395457 up:source unirule:MF_01133 .
_:395458 up:source unirule:MF_01133 .
_:395459 up:source unirule:MF_01133 .
_:395460 up:source unirule:MF_01133 .
_:395461 up:source unirule:MF_01133 .
_:395462 up:source unirule:MF_01133 .
_:395463 up:source unirule:MF_01133 .
_:395464 up:source unirule:MF_01133 .
_:395465 up:source unirule:MF_01133 .
_:395466 up:source unirule:MF_01133 .
_:395467 up:source unirule:MF_01133 .
_:395468 up:source unirule:MF_01133 .
_:395469 up:source unirule:MF_01133 .
_:395470 up:source unirule:MF_01133 .
_:395471 up:source unirule:MF_01133 .
_:395472 up:source unirule:MF_01133 .
_:395473 up:source unirule:MF_01133 .
_:395474 up:source unirule:MF_01133 .
_:395475 up:source unirule:MF_01133 .
_:395476 up:source unirule:MF_01133 .
_:395477 up:source unirule:MF_01133 .
_:395478 up:source unirule:MF_01133 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0006196 ,
GO:0016984 ,
keyword:120 ,
keyword:456 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.1.39' ;
up:fullName 'Ribulose bisphosphate carboxylase' ;
up:shortName 'RuBisCO' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'rbcL' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3-phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer or homodecamer. In contrast to form I RuBisCO, the form III RuBisCO is composed solely of large subunits.' .
?annotation8 a up:Annotation ;
rdfs:comment 'Because the Archaea possessing a type III RuBisCO are all anaerobic, it is most likely that only the carboxylase activity of RuBisCO, and not the competitive oxygenase activity (by which RuBP reacts with O(2) to form one molecule of 3-phosphoglycerate and one molecule of 2-phosphoglycolate), is biologically relevant in these strains.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RuBisCO large chain family. Type III subfamily.' .
?case10 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'via carbamate group' .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:18420 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:18420 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:18420 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf ?molecule35 .
?molecule35 rdfs:label 'substrate' .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf ?molecule43 .
?molecule43 rdfs:label 'substrate' .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf ?molecule63 .
?molecule63 rdfs:label 'substrate' .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf ?molecule71 .
?molecule71 rdfs:label 'substrate' .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf ?molecule79 .
?molecule79 rdfs:label 'substrate' .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-carboxylysine' .
?pfsb90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
_:395479 a rdf:Statement ;
up:attribution _:395451 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:395480 a rdf:Statement ;
up:attribution _:395452 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:395481 a rdf:Statement ;
up:attribution _:395453 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:395482 a rdf:Statement ;
up:attribution _:395454 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:395483 a rdf:Statement ;
up:attribution _:395455 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:395484 a rdf:Statement ;
up:attribution _:395456 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:395485 a rdf:Statement ;
up:attribution _:395457 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:395486 a rdf:Statement ;
up:attribution _:395458 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:395487 a rdf:Statement ;
up:attribution _:395459 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:120 .
_:395488 a rdf:Statement ;
up:attribution _:395460 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:395489 a rdf:Statement ;
up:attribution _:395461 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:395490 a rdf:Statement ;
up:attribution _:395462 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016984 .
_:395491 a rdf:Statement ;
up:attribution _:395463 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006196 .
_:395492 a rdf:Statement ;
up:attribution _:395464 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:395493 a rdf:Statement ;
up:attribution _:395465 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:395494 a rdf:Statement ;
up:attribution _:395466 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:395495 a rdf:Statement ;
up:source unirule:MF_01133 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:395496 a rdf:Statement ;
up:attribution _:395467 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:395497 a rdf:Statement ;
up:source unirule:MF_01133 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:395498 a rdf:Statement ;
up:attribution _:395468 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:395499 a rdf:Statement ;
up:source unirule:MF_01133 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:395500 a rdf:Statement ;
up:attribution _:395469 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:395501 a rdf:Statement ;
up:source unirule:MF_01133 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:395502 a rdf:Statement ;
up:attribution _:395470 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:395503 a rdf:Statement ;
up:source unirule:MF_01133 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:395504 a rdf:Statement ;
up:attribution _:395471 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:395505 a rdf:Statement ;
up:source unirule:MF_01133 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:395506 a rdf:Statement ;
up:attribution _:395472 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:395507 a rdf:Statement ;
up:source unirule:MF_01133 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:395508 a rdf:Statement ;
up:attribution _:395473 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:395509 a rdf:Statement ;
up:source unirule:MF_01133 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:395510 a rdf:Statement ;
up:attribution _:395474 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:395511 a rdf:Statement ;
up:source unirule:MF_01133 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:395512 a rdf:Statement ;
up:attribution _:395475 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:395513 a rdf:Statement ;
up:source unirule:MF_01133 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:395514 a rdf:Statement ;
up:attribution _:395476 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:395515 a rdf:Statement ;
up:source unirule:MF_01133 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:395516 a rdf:Statement ;
up:attribution _:395477 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:395517 a rdf:Statement ;
up:source unirule:MF_01133 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:395518 a rdf:Statement ;
up:attribution _:395478 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01133
#Rule MF_01133 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01133 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01133a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionO9362799 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93627101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93627MF_0113394 .
?templateMotifSequenceMatchRegionO9362799 faldo:begin ?templateMotifSequenceMatchBeginO93627100 .
?templateMotifSequenceMatchBeginO93627100 faldo:position ?templateMotifSequenceMatchBeginPositionO9362795 ;
faldo:reference isoform:O93627-1 .
?templateMotifSequenceProfileAlignmentOperationO93627101 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01133105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93627MF_0113396 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01133104 .
?targetMotifMatchRegionMatchBeginMF_01133104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0113397 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01133105 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_0113394, 1, (STRLEN(?templateMotifCigarO93627MF_0113394) - STRLEN(REPLACE(?templateMotifCigarO93627MF_0113394, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionO9362795) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_0113396, 1, (STRLEN(?targetMotifMatchCigarO93627MF_0113396) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_0113396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_0113396, 1, (STRLEN(?targetMotifMatchCigarO93627MF_0113396) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_0113396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0113397) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'K')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_0113394, 1, (STRLEN(?templateMotifCigarO93627MF_0113394) - STRLEN(REPLACE(?templateMotifCigarO93627MF_0113394, CONCAT('^(?:-*[^-]){', STR(((191 - ?templateMotifSequenceMatchBeginPositionO9362795) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_0113396, 1, (STRLEN(?targetMotifMatchCigarO93627MF_0113396) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_0113396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_0113396, 1, (STRLEN(?targetMotifMatchCigarO93627MF_0113396) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_0113396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_0113397) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_0113394, 1, (STRLEN(?templateMotifCigarO93627MF_0113394) - STRLEN(REPLACE(?templateMotifCigarO93627MF_0113394, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionO9362795) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_0113396, 1, (STRLEN(?targetMotifMatchCigarO93627MF_0113396) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_0113396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_0113396, 1, (STRLEN(?targetMotifMatchCigarO93627MF_0113396) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_0113396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_0113397) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'E')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionO93627120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93627122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93627MF_01133115 .
?templateMotifSequenceMatchRegionO93627120 faldo:begin ?templateMotifSequenceMatchBeginO93627121 .
?templateMotifSequenceMatchBeginO93627121 faldo:position ?templateMotifSequenceMatchBeginPositionO93627116 ;
faldo:reference isoform:O93627-1 .
?templateMotifSequenceProfileAlignmentOperationO93627122 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01133126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93627MF_01133117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01133125 .
?targetMotifMatchRegionMatchBeginMF_01133125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01133118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01133126 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_01133115, 1, (STRLEN(?templateMotifCigarO93627MF_01133115) - STRLEN(REPLACE(?templateMotifCigarO93627MF_01133115, CONCAT('^(?:-*[^-]){', STR(((367 - ?templateMotifSequenceMatchBeginPositionO93627116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_01133117, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133117) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_01133117, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133117) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01133118) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_01133115, 1, (STRLEN(?templateMotifCigarO93627MF_01133115) - STRLEN(REPLACE(?templateMotifCigarO93627MF_01133115, CONCAT('^(?:-*[^-]){', STR(((369 - ?templateMotifSequenceMatchBeginPositionO93627116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_01133117, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133117) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_01133117, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133117) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01133118) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse33) .
FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionO93627137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93627139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93627MF_01133132 .
?templateMotifSequenceMatchRegionO93627137 faldo:begin ?templateMotifSequenceMatchBeginO93627138 .
?templateMotifSequenceMatchBeginO93627138 faldo:position ?templateMotifSequenceMatchBeginPositionO93627133 ;
faldo:reference isoform:O93627-1 .
?templateMotifSequenceProfileAlignmentOperationO93627139 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01133143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93627MF_01133134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01133142 .
?targetMotifMatchRegionMatchBeginMF_01133142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01133135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01133143 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_01133132, 1, (STRLEN(?templateMotifCigarO93627MF_01133132) - STRLEN(REPLACE(?templateMotifCigarO93627MF_01133132, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionO93627133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_01133134, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133134) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_01133134, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133134) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01133135) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_01133132, 1, (STRLEN(?templateMotifCigarO93627MF_01133132) - STRLEN(REPLACE(?templateMotifCigarO93627MF_01133132, CONCAT('^(?:-*[^-]){', STR(((392 - ?templateMotifSequenceMatchBeginPositionO93627133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_01133134, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133134) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_01133134, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133134) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01133135) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse41) .
FILTER (REGEX('Q[ARNDCQEGHILKMFPSTWYVBZJUOX]GG', SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionO93627154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93627156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93627MF_01133149 .
?templateMotifSequenceMatchRegionO93627154 faldo:begin ?templateMotifSequenceMatchBeginO93627155 .
?templateMotifSequenceMatchBeginO93627155 faldo:position ?templateMotifSequenceMatchBeginPositionO93627150 ;
faldo:reference isoform:O93627-1 .
?templateMotifSequenceProfileAlignmentOperationO93627156 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01133160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93627MF_01133151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01133159 .
?targetMotifMatchRegionMatchBeginMF_01133159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01133152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01133160 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_01133149, 1, (STRLEN(?templateMotifCigarO93627MF_01133149) - STRLEN(REPLACE(?templateMotifCigarO93627MF_01133149, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionO93627150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_01133151, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133151) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_01133151, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133151) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01133152) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs2t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionO93627169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93627171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93627MF_01133164 .
?templateMotifSequenceMatchRegionO93627169 faldo:begin ?templateMotifSequenceMatchBeginO93627170 .
?templateMotifSequenceMatchBeginO93627170 faldo:position ?templateMotifSequenceMatchBeginPositionO93627165 ;
faldo:reference isoform:O93627-1 .
?templateMotifSequenceProfileAlignmentOperationO93627171 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01133175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93627MF_01133166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01133174 .
?targetMotifMatchRegionMatchBeginMF_01133174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01133167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01133175 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_01133164, 1, (STRLEN(?templateMotifCigarO93627MF_01133164) - STRLEN(REPLACE(?templateMotifCigarO93627MF_01133164, CONCAT('^(?:-*[^-]){', STR(((281 - ?templateMotifSequenceMatchBeginPositionO93627165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_01133166, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133166) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_01133166, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133166) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_01133167) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs2t178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionO93627184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93627186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93627MF_01133179 .
?templateMotifSequenceMatchRegionO93627184 faldo:begin ?templateMotifSequenceMatchBeginO93627185 .
?templateMotifSequenceMatchBeginO93627185 faldo:position ?templateMotifSequenceMatchBeginPositionO93627180 ;
faldo:reference isoform:O93627-1 .
?templateMotifSequenceProfileAlignmentOperationO93627186 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01133190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93627MF_01133181 .
?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01133189 .
?targetMotifMatchRegionMatchBeginMF_01133189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01133182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01133190 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_01133179, 1, (STRLEN(?templateMotifCigarO93627MF_01133179) - STRLEN(REPLACE(?templateMotifCigarO93627MF_01133179, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionO93627180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_01133181, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133181) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_01133181, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133181) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) .
BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_01133182) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs2t193) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch198 faldo:location ?templateMotifSequenceMatchRegionO93627199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93627201 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93627MF_01133194 .
?templateMotifSequenceMatchRegionO93627199 faldo:begin ?templateMotifSequenceMatchBeginO93627200 .
?templateMotifSequenceMatchBeginO93627200 faldo:position ?templateMotifSequenceMatchBeginPositionO93627195 ;
faldo:reference isoform:O93627-1 .
?templateMotifSequenceProfileAlignmentOperationO93627201 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
?targetMotifMatch202 faldo:location ?targetMotifMatchRegionMatch203 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01133205 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93627MF_01133196 .
?targetMotifMatchRegionMatch203 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01133204 .
?targetMotifMatchRegionMatchBeginMF_01133204 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01133197 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01133205 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_01133194, 1, (STRLEN(?templateMotifCigarO93627MF_01133194) - STRLEN(REPLACE(?templateMotifCigarO93627MF_01133194, CONCAT('^(?:-*[^-]){', STR(((282 - ?templateMotifSequenceMatchBeginPositionO93627195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_01133196, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133196) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_01133196, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133196) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_01133197) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs2t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch213 faldo:location ?templateMotifSequenceMatchRegionO93627214 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93627216 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93627MF_01133209 .
?templateMotifSequenceMatchRegionO93627214 faldo:begin ?templateMotifSequenceMatchBeginO93627215 .
?templateMotifSequenceMatchBeginO93627215 faldo:position ?templateMotifSequenceMatchBeginPositionO93627210 ;
faldo:reference isoform:O93627-1 .
?templateMotifSequenceProfileAlignmentOperationO93627216 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
?targetMotifMatch217 faldo:location ?targetMotifMatchRegionMatch218 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01133220 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93627MF_01133211 .
?targetMotifMatchRegionMatch218 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01133219 .
?targetMotifMatchRegionMatchBeginMF_01133219 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01133212 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01133220 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_01133209, 1, (STRLEN(?templateMotifCigarO93627MF_01133209) - STRLEN(REPLACE(?templateMotifCigarO93627MF_01133209, CONCAT('^(?:-*[^-]){', STR(((314 - ?templateMotifSequenceMatchBeginPositionO93627210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_01133211, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133211) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_01133211, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133211) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) .
BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_01133212) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs2t223) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch228 faldo:location ?templateMotifSequenceMatchRegionO93627229 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93627231 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93627MF_01133224 .
?templateMotifSequenceMatchRegionO93627229 faldo:begin ?templateMotifSequenceMatchBeginO93627230 .
?templateMotifSequenceMatchBeginO93627230 faldo:position ?templateMotifSequenceMatchBeginPositionO93627225 ;
faldo:reference isoform:O93627-1 .
?templateMotifSequenceProfileAlignmentOperationO93627231 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
?targetMotifMatch232 faldo:location ?targetMotifMatchRegionMatch233 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01133235 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93627MF_01133226 .
?targetMotifMatchRegionMatch233 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01133234 .
?targetMotifMatchRegionMatchBeginMF_01133234 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01133227 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01133235 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_01133224, 1, (STRLEN(?templateMotifCigarO93627MF_01133224) - STRLEN(REPLACE(?templateMotifCigarO93627MF_01133224, CONCAT('^(?:-*[^-]){', STR(((322 - ?templateMotifSequenceMatchBeginPositionO93627225) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_01133226, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133226) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_01133226, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133226) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_01133227) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs2t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionO93627244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93627246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93627MF_01133239 .
?templateMotifSequenceMatchRegionO93627244 faldo:begin ?templateMotifSequenceMatchBeginO93627245 .
?templateMotifSequenceMatchBeginO93627245 faldo:position ?templateMotifSequenceMatchBeginPositionO93627240 ;
faldo:reference isoform:O93627-1 .
?templateMotifSequenceProfileAlignmentOperationO93627246 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01133250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93627MF_01133241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01133249 .
?targetMotifMatchRegionMatchBeginMF_01133249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01133242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01133250 edam:has_input signature:MF_01133 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93627MF_01133239, 1, (STRLEN(?templateMotifCigarO93627MF_01133239) - STRLEN(REPLACE(?templateMotifCigarO93627MF_01133239, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionO93627240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93627MF_01133241, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133241) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93627MF_01133241, 1, (STRLEN(?targetMotifMatchCigarO93627MF_01133241) - STRLEN(REPLACE(?targetMotifMatchCigarO93627MF_01133241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_01133242) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs2t253) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01133a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag254) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag254, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
