| http://purl.uniprot.org/unirules/MF_01209#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:423891 up:source unirule:MF_01209 .
_:423892 up:source unirule:MF_01209 .
_:423893 up:source unirule:MF_01209 .
_:423894 up:source unirule:MF_01209 .
_:423895 up:source unirule:MF_01209 .
_:423896 up:source unirule:MF_01209 .
_:423897 up:source unirule:MF_01209 .
_:423898 up:source unirule:MF_01209 .
_:423899 up:source unirule:MF_01209 .
_:423900 up:source unirule:MF_01209 .
_:423901 up:source unirule:MF_01209 .
_:423902 up:source unirule:MF_01209 .
_:423903 up:source unirule:MF_01209 .
_:423904 up:source unirule:MF_01209 .
_:423905 up:source unirule:MF_01209 .
_:423906 up:source unirule:MF_01209 .
_:423907 up:source unirule:MF_01209 .
_:423908 up:source unirule:MF_01209 .
_:423909 up:source unirule:MF_01209 .
_:423910 up:source unirule:MF_01209 .
_:423911 up:source unirule:MF_01209 .
_:423912 up:source unirule:MF_01209 .
_:423913 up:source unirule:MF_01209 .
_:423914 up:source unirule:MF_01209 .
_:423915 up:source unirule:MF_01209 .
_:423916 up:source unirule:MF_01209 .
_:423917 up:source unirule:MF_01209 .
_:423918 up:source unirule:MF_01209 .
_:423919 up:source unirule:MF_01209 .
_:423920 up:source unirule:MF_01209 .
_:423921 up:source unirule:MF_01209 .
_:423922 up:source unirule:MF_01209 .
_:423923 up:source unirule:MF_01209 .
_:423924 up:source unirule:MF_01209 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0004088 ,
GO:0005524 ,
GO:0006526 ,
GO:0044205 ,
keyword:28 ,
keyword:315 ,
keyword:436 ,
keyword:547 ,
keyword:55 ,
keyword:665 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.5.5' ;
up:fullName 'Carbamoyl phosphate synthase small chain' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Carbamoyl phosphate synthetase glutamine chain' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'carA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Small subunit of the glutamine-dependent carbamoyl phosphate synthetase (CPSase). CPSase catalyzes the formation of carbamoyl phosphate from the ammonia moiety of glutamine, carbonate, and phosphate donated by ATP, constituting the first step of 2 biosynthetic pathways, one leading to arginine and/or urea and the other to pyrimidine nucleotides. The small subunit (glutamine amidotransferase) binds and cleaves glutamine to supply the large subunit with the substrate ammonia.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.' .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate. Tetramer of heterodimers (alpha,beta)4.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the CarA family.' .
?case12 up:classifiedWith GO:0009507 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'CPSase' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Active_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Active_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:58359 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:58359 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:58359 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:58359 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:58359 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:58359 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:58359 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:58359 .
_:423925 a rdf:Statement ;
up:attribution _:423891 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:423926 a rdf:Statement ;
up:attribution _:423892 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:423927 a rdf:Statement ;
up:attribution _:423893 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:423928 a rdf:Statement ;
up:attribution _:423894 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:423929 a rdf:Statement ;
up:attribution _:423895 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:423930 a rdf:Statement ;
up:attribution _:423896 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:423931 a rdf:Statement ;
up:attribution _:423897 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:423932 a rdf:Statement ;
up:attribution _:423898 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:423933 a rdf:Statement ;
up:attribution _:423899 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:423934 a rdf:Statement ;
up:attribution _:423900 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:423935 a rdf:Statement ;
up:attribution _:423901 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:423936 a rdf:Statement ;
up:attribution _:423902 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:55 .
_:423937 a rdf:Statement ;
up:attribution _:423903 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:423938 a rdf:Statement ;
up:attribution _:423904 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:315 .
_:423939 a rdf:Statement ;
up:attribution _:423905 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:423940 a rdf:Statement ;
up:attribution _:423906 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:423941 a rdf:Statement ;
up:attribution _:423907 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:665 .
_:423942 a rdf:Statement ;
up:attribution _:423908 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:423943 a rdf:Statement ;
up:attribution _:423909 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004088 .
_:423944 a rdf:Statement ;
up:attribution _:423910 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006526 .
_:423945 a rdf:Statement ;
up:attribution _:423911 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044205 .
_:423946 a rdf:Statement ;
up:attribution _:423912 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
_:423947 a rdf:Statement ;
up:source unirule:MF_01209 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:423948 a rdf:Statement ;
up:attribution _:423913 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:423949 a rdf:Statement ;
up:source unirule:MF_01209 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:423950 a rdf:Statement ;
up:attribution _:423914 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:423951 a rdf:Statement ;
up:source unirule:MF_01209 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:423952 a rdf:Statement ;
up:attribution _:423915 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:423953 a rdf:Statement ;
up:source unirule:MF_01209 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:423954 a rdf:Statement ;
up:attribution _:423916 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:423955 a rdf:Statement ;
up:source unirule:MF_01209 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:423956 a rdf:Statement ;
up:attribution _:423917 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:423957 a rdf:Statement ;
up:source unirule:MF_01209 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:423958 a rdf:Statement ;
up:attribution _:423918 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:423959 a rdf:Statement ;
up:source unirule:MF_01209 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:423960 a rdf:Statement ;
up:attribution _:423919 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:423961 a rdf:Statement ;
up:source unirule:MF_01209 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:423962 a rdf:Statement ;
up:attribution _:423920 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:423963 a rdf:Statement ;
up:source unirule:MF_01209 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:423964 a rdf:Statement ;
up:attribution _:423921 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:423965 a rdf:Statement ;
up:source unirule:MF_01209 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:423966 a rdf:Statement ;
up:attribution _:423922 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:423967 a rdf:Statement ;
up:source unirule:MF_01209 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:423968 a rdf:Statement ;
up:attribution _:423923 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:423969 a rdf:Statement ;
up:source unirule:MF_01209 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:423970 a rdf:Statement ;
up:attribution _:423924 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01209
#Rule MF_01209 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-11-05
{
VALUES ?supertaxon93 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01209 .
?thisOrganism rdfs:subClassOf+ ?supertaxon93 .
} UNION {
?this rdfs:seeAlso signature:MF_01209 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_01209a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP0A6F199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F1MF_0120994 .
?templateMotifSequenceMatchRegionP0A6F199 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1100 .
?templateMotifSequenceMatchBeginP0A6F1100 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F195 ;
faldo:reference isoform:P0A6F1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F1101 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F1MF_0120996 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209104 .
?targetMotifMatchRegionMatchBeginMF_01209104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0120997 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01209105 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_0120994, 1, (STRLEN(?templateMotifCigarP0A6F1MF_0120994) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_0120994, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP0A6F195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_0120996, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_0120996) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_0120996, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_0120996, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_0120996) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_0120996, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0120997) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP0A6F1114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F1MF_01209109 .
?templateMotifSequenceMatchRegionP0A6F1114 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1115 .
?templateMotifSequenceMatchBeginP0A6F1115 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1110 ;
faldo:reference isoform:P0A6F1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F1116 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F1MF_01209111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209119 .
?targetMotifMatchRegionMatchBeginMF_01209119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01209120 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209109, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209109) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209109, CONCAT('^(?:-*[^-]){', STR(((269 - ?templateMotifSequenceMatchBeginPositionP0A6F1110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209111, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209111) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209111, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209111) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_01209112) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP0A6F1129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F1MF_01209124 .
?templateMotifSequenceMatchRegionP0A6F1129 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1130 .
?templateMotifSequenceMatchBeginP0A6F1130 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1125 ;
faldo:reference isoform:P0A6F1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F1131 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F1MF_01209126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209134 .
?targetMotifMatchRegionMatchBeginMF_01209134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01209135 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209124, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209124) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209124, CONCAT('^(?:-*[^-]){', STR(((353 - ?templateMotifSequenceMatchBeginPositionP0A6F1125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209126, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209126) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209126, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209126) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_01209127) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP0A6F1144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F1MF_01209139 .
?templateMotifSequenceMatchRegionP0A6F1144 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1145 .
?templateMotifSequenceMatchBeginP0A6F1145 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1140 ;
faldo:reference isoform:P0A6F1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F1146 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F1MF_01209141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209149 .
?targetMotifMatchRegionMatchBeginMF_01209149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01209150 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209139, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209139) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209139, CONCAT('^(?:-*[^-]){', STR(((355 - ?templateMotifSequenceMatchBeginPositionP0A6F1140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209141, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209141) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209141, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209141) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_01209142) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP0A6F1159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F1MF_01209154 .
?templateMotifSequenceMatchRegionP0A6F1159 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1160 .
?templateMotifSequenceMatchBeginP0A6F1160 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1155 ;
faldo:reference isoform:P0A6F1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F1161 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F1MF_01209156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209164 .
?targetMotifMatchRegionMatchBeginMF_01209164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01209165 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209154, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209154) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209154, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP0A6F1155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209156, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209156) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209156, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209156) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_01209157) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP0A6F1174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F1MF_01209169 .
?templateMotifSequenceMatchRegionP0A6F1174 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1175 .
?templateMotifSequenceMatchBeginP0A6F1175 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1170 ;
faldo:reference isoform:P0A6F1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F1176 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F1MF_01209171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209179 .
?targetMotifMatchRegionMatchBeginMF_01209179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01209180 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209169, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209169) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209169, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionP0A6F1170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209171, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209171, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_01209172) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP0A6F1189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F1MF_01209184 .
?templateMotifSequenceMatchRegionP0A6F1189 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1190 .
?templateMotifSequenceMatchBeginP0A6F1190 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1185 ;
faldo:reference isoform:P0A6F1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F1191 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F1MF_01209186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209194 .
?targetMotifMatchRegionMatchBeginMF_01209194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01209195 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209184, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209184) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209184, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionP0A6F1185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209186, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209186) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209186, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209186) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_01209187) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP0A6F1204 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1206 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F1MF_01209199 .
?templateMotifSequenceMatchRegionP0A6F1204 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1205 .
?templateMotifSequenceMatchBeginP0A6F1205 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1200 ;
faldo:reference isoform:P0A6F1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F1206 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209210 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F1MF_01209201 .
?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209209 .
?targetMotifMatchRegionMatchBeginMF_01209209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209202 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01209210 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209199, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209199) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209199, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP0A6F1200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209201, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209201) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209201, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209201) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_01209202) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER (REGEX('[LFM]', SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP0A6F1219 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1221 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F1MF_01209214 .
?templateMotifSequenceMatchRegionP0A6F1219 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1220 .
?templateMotifSequenceMatchBeginP0A6F1220 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1215 ;
faldo:reference isoform:P0A6F1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F1221 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F1MF_01209216 .
?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209224 .
?targetMotifMatchRegionMatchBeginMF_01209224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01209225 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209214, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209214) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209214, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP0A6F1215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209216, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209216) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209216, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209216) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_01209217) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP0A6F1234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F1MF_01209229 .
?templateMotifSequenceMatchRegionP0A6F1234 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1235 .
?templateMotifSequenceMatchBeginP0A6F1235 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1230 ;
faldo:reference isoform:P0A6F1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F1236 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F1MF_01209231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209239 .
?targetMotifMatchRegionMatchBeginMF_01209239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01209240 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209229, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209229) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209229, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionP0A6F1230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209231, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209231) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209231, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209231) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_01209232) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP0A6F1249 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1251 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F1MF_01209244 .
?templateMotifSequenceMatchRegionP0A6F1249 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1250 .
?templateMotifSequenceMatchBeginP0A6F1250 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1245 ;
faldo:reference isoform:P0A6F1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F1251 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F1MF_01209246 .
?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209254 .
?targetMotifMatchRegionMatchBeginMF_01209254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01209255 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209244, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209244) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209244, CONCAT('^(?:-*[^-]){', STR(((313 - ?templateMotifSequenceMatchBeginPositionP0A6F1245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209246, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209246) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209246, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209246) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_01209247) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t258) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionP0A6F1264 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1266 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F1MF_01209259 .
?templateMotifSequenceMatchRegionP0A6F1264 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1265 .
?templateMotifSequenceMatchBeginP0A6F1265 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1260 ;
faldo:reference isoform:P0A6F1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F1266 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209270 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F1MF_01209261 .
?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209269 .
?targetMotifMatchRegionMatchBeginMF_01209269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209262 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01209270 edam:has_input signature:MF_01209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209259, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209259) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209259, CONCAT('^(?:-*[^-]){', STR(((314 - ?templateMotifSequenceMatchBeginPositionP0A6F1260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209261, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209261) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209261, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209261) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) .
BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_01209262) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t273) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01209a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case12) .
}
}
"xsd:string |
