| http://purl.uniprot.org/unirules/MF_01269#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:450885 up:source unirule:MF_01269 .
_:450886 up:source unirule:MF_01269 .
_:450887 up:source unirule:MF_01269 .
_:450888 up:source unirule:MF_01269 .
_:450889 up:source unirule:MF_01269 .
_:450890 up:source unirule:MF_01269 .
_:450891 up:source unirule:MF_01269 .
_:450892 up:source unirule:MF_01269 .
_:450893 up:source unirule:MF_01269 .
_:450894 up:source unirule:MF_01269 .
_:450895 up:source unirule:MF_01269 .
_:450896 up:source unirule:MF_01269 .
_:450897 up:source unirule:MF_01269 .
_:450898 up:source unirule:MF_01269 .
_:450899 up:source unirule:MF_01269 .
_:450900 up:source unirule:MF_01269 .
_:450901 up:source unirule:MF_01269 .
_:450902 up:source unirule:MF_01269 .
_:450903 up:source unirule:MF_01269 .
_:450904 up:source unirule:MF_01269 .
_:450905 up:source unirule:MF_01269 .
_:450906 up:source unirule:MF_01269 .
_:450907 up:source unirule:MF_01269 .
_:450908 up:source unirule:MF_01269 .
_:450909 up:source unirule:MF_01269 .
_:450910 up:source unirule:MF_01269 .
_:450911 up:source unirule:MF_01269 .
_:450912 up:source unirule:MF_01269 .
_:450913 up:source unirule:MF_01269 .
_:450914 up:source unirule:MF_01269 .
_:450915 up:source unirule:MF_01269 .
_:450916 up:source unirule:MF_01269 .
_:450917 up:source unirule:MF_01269 .
_:450918 up:source unirule:MF_01269 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0000287 ,
GO:0004765 ,
GO:0005524 ,
GO:0005737 ,
GO:0009423 ,
keyword:28 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:57 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.71' ;
up:fullName 'Shikimate kinase 2' ;
up:shortName 'SK 2' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'aroL' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 5/7.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Domain_Annotation ;
rdfs:comment 'The LID domain closes over the active site upon ATP binding.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the shikimate kinase family. AroL subfamily.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'LID domain' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:30616 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:18420 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:18420 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf ?molecule44 .
?molecule44 rdfs:label 'substrate' .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf ?molecule52 .
?molecule52 rdfs:label 'substrate' .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf ?molecule60 .
?molecule60 rdfs:label 'substrate' .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:30616 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf ?molecule75 .
?molecule75 rdfs:label 'substrate' .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf chebi:30616 .
_:450919 a rdf:Statement ;
up:attribution _:450885 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:450920 a rdf:Statement ;
up:attribution _:450886 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:450921 a rdf:Statement ;
up:attribution _:450887 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:450922 a rdf:Statement ;
up:attribution _:450888 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:450923 a rdf:Statement ;
up:attribution _:450889 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:450924 a rdf:Statement ;
up:attribution _:450890 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:450925 a rdf:Statement ;
up:attribution _:450891 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:450926 a rdf:Statement ;
up:attribution _:450892 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:450927 a rdf:Statement ;
up:attribution _:450893 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:450928 a rdf:Statement ;
up:attribution _:450894 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:450929 a rdf:Statement ;
up:attribution _:450895 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:450930 a rdf:Statement ;
up:attribution _:450896 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:450931 a rdf:Statement ;
up:attribution _:450897 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:57 .
_:450932 a rdf:Statement ;
up:attribution _:450898 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:450933 a rdf:Statement ;
up:attribution _:450899 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:450934 a rdf:Statement ;
up:attribution _:450900 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:450935 a rdf:Statement ;
up:attribution _:450901 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:450936 a rdf:Statement ;
up:attribution _:450902 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:450937 a rdf:Statement ;
up:attribution _:450903 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:450938 a rdf:Statement ;
up:attribution _:450904 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:450939 a rdf:Statement ;
up:attribution _:450905 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:450940 a rdf:Statement ;
up:attribution _:450906 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004765 .
_:450941 a rdf:Statement ;
up:attribution _:450907 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009423 .
_:450942 a rdf:Statement ;
up:attribution _:450908 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:450943 a rdf:Statement ;
up:source unirule:MF_01269 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:450944 a rdf:Statement ;
up:attribution _:450909 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:450945 a rdf:Statement ;
up:source unirule:MF_01269 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:450946 a rdf:Statement ;
up:attribution _:450910 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:450947 a rdf:Statement ;
up:source unirule:MF_01269 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:450948 a rdf:Statement ;
up:attribution _:450911 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:450949 a rdf:Statement ;
up:source unirule:MF_01269 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:450950 a rdf:Statement ;
up:attribution _:450912 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:450951 a rdf:Statement ;
up:source unirule:MF_01269 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:450952 a rdf:Statement ;
up:attribution _:450913 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:450953 a rdf:Statement ;
up:source unirule:MF_01269 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:450954 a rdf:Statement ;
up:attribution _:450914 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:450955 a rdf:Statement ;
up:source unirule:MF_01269 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:450956 a rdf:Statement ;
up:attribution _:450915 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:450957 a rdf:Statement ;
up:source unirule:MF_01269 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:450958 a rdf:Statement ;
up:attribution _:450916 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:450959 a rdf:Statement ;
up:source unirule:MF_01269 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:450960 a rdf:Statement ;
up:attribution _:450917 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:450961 a rdf:Statement ;
up:source unirule:MF_01269 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:450962 a rdf:Statement ;
up:attribution _:450918 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01269
#Rule MF_01269 Created by:? on:2006-05-18 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01269 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01269a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP1088090 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1088092 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10880MF_0126985 .
?templateMotifSequenceMatchRegionP1088090 faldo:begin ?templateMotifSequenceMatchBeginP1088091 .
?templateMotifSequenceMatchBeginP1088091 faldo:position ?templateMotifSequenceMatchBeginPositionP1088086 ;
faldo:reference isoform:P10880-1 .
?templateMotifSequenceProfileAlignmentOperationP1088092 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0126996 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10880MF_0126987 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0126995 .
?targetMotifMatchRegionMatchBeginMF_0126995 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0126988 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0126996 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10880MF_0126985, 1, (STRLEN(?templateMotifCigarP10880MF_0126985) - STRLEN(REPLACE(?templateMotifCigarP10880MF_0126985, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP1088086) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10880MF_0126987, 1, (STRLEN(?targetMotifMatchCigarP10880MF_0126987) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_0126987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10880MF_0126987, 1, (STRLEN(?targetMotifMatchCigarP10880MF_0126987) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_0126987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0126988) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10880MF_0126985, 1, (STRLEN(?templateMotifCigarP10880MF_0126985) - STRLEN(REPLACE(?templateMotifCigarP10880MF_0126985, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP1088086) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10880MF_0126987, 1, (STRLEN(?targetMotifMatchCigarP10880MF_0126987) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_0126987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10880MF_0126987, 1, (STRLEN(?targetMotifMatchCigarP10880MF_0126987) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_0126987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0126988) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP10880107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10880109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10880MF_01269102 .
?templateMotifSequenceMatchRegionP10880107 faldo:begin ?templateMotifSequenceMatchBeginP10880108 .
?templateMotifSequenceMatchBeginP10880108 faldo:position ?templateMotifSequenceMatchBeginPositionP10880103 ;
faldo:reference isoform:P10880-1 .
?templateMotifSequenceProfileAlignmentOperationP10880109 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01269113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10880MF_01269104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01269112 .
?targetMotifMatchRegionMatchBeginMF_01269112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01269105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01269113 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10880MF_01269102, 1, (STRLEN(?templateMotifCigarP10880MF_01269102) - STRLEN(REPLACE(?templateMotifCigarP10880MF_01269102, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP10880103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10880MF_01269104, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269104) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10880MF_01269104, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269104) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01269105) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10880MF_01269102, 1, (STRLEN(?templateMotifCigarP10880MF_01269102) - STRLEN(REPLACE(?templateMotifCigarP10880MF_01269102, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP10880103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10880MF_01269104, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269104) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10880MF_01269104, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269104) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01269105) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER (REGEX('G[CA]GKTT', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionP10880124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10880126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10880MF_01269119 .
?templateMotifSequenceMatchRegionP10880124 faldo:begin ?templateMotifSequenceMatchBeginP10880125 .
?templateMotifSequenceMatchBeginP10880125 faldo:position ?templateMotifSequenceMatchBeginPositionP10880120 ;
faldo:reference isoform:P10880-1 .
?templateMotifSequenceProfileAlignmentOperationP10880126 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01269130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10880MF_01269121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01269129 .
?targetMotifMatchRegionMatchBeginMF_01269129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01269122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01269130 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10880MF_01269119, 1, (STRLEN(?templateMotifCigarP10880MF_01269119) - STRLEN(REPLACE(?templateMotifCigarP10880MF_01269119, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP10880120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10880MF_01269121, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269121) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10880MF_01269121, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269121) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01269122) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP10880139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10880141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10880MF_01269134 .
?templateMotifSequenceMatchRegionP10880139 faldo:begin ?templateMotifSequenceMatchBeginP10880140 .
?templateMotifSequenceMatchBeginP10880140 faldo:position ?templateMotifSequenceMatchBeginPositionP10880135 ;
faldo:reference isoform:P10880-1 .
?templateMotifSequenceProfileAlignmentOperationP10880141 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01269145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10880MF_01269136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01269144 .
?targetMotifMatchRegionMatchBeginMF_01269144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01269137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01269145 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10880MF_01269134, 1, (STRLEN(?templateMotifCigarP10880MF_01269134) - STRLEN(REPLACE(?templateMotifCigarP10880MF_01269134, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionP10880135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10880MF_01269136, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269136) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10880MF_01269136, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269136) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01269137) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP10880154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10880156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10880MF_01269149 .
?templateMotifSequenceMatchRegionP10880154 faldo:begin ?templateMotifSequenceMatchBeginP10880155 .
?templateMotifSequenceMatchBeginP10880155 faldo:position ?templateMotifSequenceMatchBeginPositionP10880150 ;
faldo:reference isoform:P10880-1 .
?templateMotifSequenceProfileAlignmentOperationP10880156 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01269160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10880MF_01269151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01269159 .
?targetMotifMatchRegionMatchBeginMF_01269159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01269152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01269160 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10880MF_01269149, 1, (STRLEN(?templateMotifCigarP10880MF_01269149) - STRLEN(REPLACE(?templateMotifCigarP10880MF_01269149, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP10880150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10880MF_01269151, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269151) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10880MF_01269151, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269151) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01269152) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP10880169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10880171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10880MF_01269164 .
?templateMotifSequenceMatchRegionP10880169 faldo:begin ?templateMotifSequenceMatchBeginP10880170 .
?templateMotifSequenceMatchBeginP10880170 faldo:position ?templateMotifSequenceMatchBeginPositionP10880165 ;
faldo:reference isoform:P10880-1 .
?templateMotifSequenceProfileAlignmentOperationP10880171 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01269175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10880MF_01269166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01269174 .
?targetMotifMatchRegionMatchBeginMF_01269174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01269167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01269175 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10880MF_01269164, 1, (STRLEN(?templateMotifCigarP10880MF_01269164) - STRLEN(REPLACE(?templateMotifCigarP10880MF_01269164, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP10880165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10880MF_01269166, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269166) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10880MF_01269166, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269166) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_01269167) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionP10880184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10880186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10880MF_01269179 .
?templateMotifSequenceMatchRegionP10880184 faldo:begin ?templateMotifSequenceMatchBeginP10880185 .
?templateMotifSequenceMatchBeginP10880185 faldo:position ?templateMotifSequenceMatchBeginPositionP10880180 ;
faldo:reference isoform:P10880-1 .
?templateMotifSequenceProfileAlignmentOperationP10880186 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01269190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10880MF_01269181 .
?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01269189 .
?targetMotifMatchRegionMatchBeginMF_01269189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01269182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01269190 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10880MF_01269179, 1, (STRLEN(?templateMotifCigarP10880MF_01269179) - STRLEN(REPLACE(?templateMotifCigarP10880MF_01269179, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionP10880180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10880MF_01269181, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269181) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10880MF_01269181, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269181) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) .
BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_01269182) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t193) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch198 faldo:location ?templateMotifSequenceMatchRegionP10880199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10880201 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10880MF_01269194 .
?templateMotifSequenceMatchRegionP10880199 faldo:begin ?templateMotifSequenceMatchBeginP10880200 .
?templateMotifSequenceMatchBeginP10880200 faldo:position ?templateMotifSequenceMatchBeginPositionP10880195 ;
faldo:reference isoform:P10880-1 .
?templateMotifSequenceProfileAlignmentOperationP10880201 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
?targetMotifMatch202 faldo:location ?targetMotifMatchRegionMatch203 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01269205 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10880MF_01269196 .
?targetMotifMatchRegionMatch203 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01269204 .
?targetMotifMatchRegionMatchBeginMF_01269204 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01269197 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01269205 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10880MF_01269194, 1, (STRLEN(?templateMotifCigarP10880MF_01269194) - STRLEN(REPLACE(?templateMotifCigarP10880MF_01269194, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP10880195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10880MF_01269196, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269196) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10880MF_01269196, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269196) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_01269197) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch213 faldo:location ?templateMotifSequenceMatchRegionP10880214 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10880216 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10880MF_01269209 .
?templateMotifSequenceMatchRegionP10880214 faldo:begin ?templateMotifSequenceMatchBeginP10880215 .
?templateMotifSequenceMatchBeginP10880215 faldo:position ?templateMotifSequenceMatchBeginPositionP10880210 ;
faldo:reference isoform:P10880-1 .
?templateMotifSequenceProfileAlignmentOperationP10880216 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
?targetMotifMatch217 faldo:location ?targetMotifMatchRegionMatch218 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01269220 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10880MF_01269211 .
?targetMotifMatchRegionMatch218 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01269219 .
?targetMotifMatchRegionMatchBeginMF_01269219 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01269212 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01269220 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10880MF_01269209, 1, (STRLEN(?templateMotifCigarP10880MF_01269209) - STRLEN(REPLACE(?templateMotifCigarP10880MF_01269209, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP10880210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10880MF_01269211, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269211) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10880MF_01269211, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269211) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) .
BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_01269212) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t223) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch228 faldo:location ?templateMotifSequenceMatchRegionP10880229 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10880231 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10880MF_01269224 .
?templateMotifSequenceMatchRegionP10880229 faldo:begin ?templateMotifSequenceMatchBeginP10880230 .
?templateMotifSequenceMatchBeginP10880230 faldo:position ?templateMotifSequenceMatchBeginPositionP10880225 ;
faldo:reference isoform:P10880-1 .
?templateMotifSequenceProfileAlignmentOperationP10880231 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
?targetMotifMatch232 faldo:location ?targetMotifMatchRegionMatch233 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01269235 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10880MF_01269226 .
?targetMotifMatchRegionMatch233 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01269234 .
?targetMotifMatchRegionMatchBeginMF_01269234 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01269227 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01269235 edam:has_input signature:MF_01269 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10880MF_01269224, 1, (STRLEN(?templateMotifCigarP10880MF_01269224) - STRLEN(REPLACE(?templateMotifCigarP10880MF_01269224, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP10880225) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10880MF_01269226, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269226) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10880MF_01269226, 1, (STRLEN(?targetMotifMatchCigarP10880MF_01269226) - STRLEN(REPLACE(?targetMotifMatchCigarP10880MF_01269226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_01269227) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs1t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01269a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
}
"xsd:string |
