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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-206 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-229 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-205 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-228 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-204 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-227 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-203 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-202 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-226 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-201 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-225 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-224 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-200 |
| http://purl.uniprot.org/unirules/MF_01351#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01351#construct-template-223 |
| http://purl.uniprot.org/unirules/MF_01351#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01351#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01351#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01351#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01351#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01351#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:486826 up:source unirule:MF_01351 .
_:486827 up:source unirule:MF_01351 .
_:486828 up:source unirule:MF_01351 .
_:486829 up:source unirule:MF_01351 .
_:486830 up:source unirule:MF_01351 .
_:486831 up:source unirule:MF_01351 .
_:486832 up:source unirule:MF_01351 .
_:486833 up:source unirule:MF_01351 .
_:486834 up:source unirule:MF_01351 .
_:486835 up:source unirule:MF_01351 .
_:486836 up:source unirule:MF_01351 .
_:486837 up:source unirule:MF_01351 .
_:486838 up:source unirule:MF_01351 .
_:486839 up:source unirule:MF_01351 .
_:486840 up:source unirule:MF_01351 .
_:486841 up:source unirule:MF_01351 .
_:486842 up:source unirule:MF_01351 .
_:486843 up:source unirule:MF_01351 .
_:486844 up:source unirule:MF_01351 .
_:486845 up:source unirule:MF_01351 .
_:486846 up:source unirule:MF_01351 .
_:486847 up:source unirule:MF_01351 .
_:486848 up:source unirule:MF_01351 .
_:486849 up:source unirule:MF_01351 .
_:486850 up:source unirule:MF_01351 .
_:486851 up:source unirule:MF_01351 .
_:486852 up:source unirule:MF_01351 .
_:486853 up:source unirule:MF_01351 .
_:486854 up:source unirule:MF_01351 .
_:486855 up:source unirule:MF_01351 .
_:486856 up:source unirule:MF_01351 .
_:486857 up:source unirule:MF_01351 .
_:486858 up:source unirule:MF_01351 .
_:486859 up:source unirule:MF_01351 .
_:486860 up:source unirule:MF_01351 .
_:486861 up:source unirule:MF_01351 .
_:486862 up:source unirule:MF_01351 .
_:486863 up:source unirule:MF_01351 .
_:486864 up:source unirule:MF_01351 .
_:486865 up:source unirule:MF_01351 .
_:486866 up:source unirule:MF_01351 .
_:486867 up:source unirule:MF_01351 .
_:486868 up:source unirule:MF_01351 .
?this up:annotation ?annotation0 ,
?annotation1 ;
up:classifiedWith GO:0005506 ,
keyword:1278 ,
keyword:408 ,
keyword:411 ,
keyword:472 ,
keyword:479 ,
keyword:4 ,
keyword:520 ,
keyword:874 .
?annotation0 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 [4Fe-4S] clusters per subunit.' .
?annotation1 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the complex I 23 kDa subunit family.' .
?case2 up:alternativeName ?name4 ,
?name5 ;
up:recommendedName ?name3 .
?name3 up:ecName '7.1.1.-' ;
up:fullName 'NAD(P)H-quinone oxidoreductase subunit I, chloroplastic' ;
rdf:type up:Structured_Name .
?name4 up:fullName 'NAD(P)H dehydrogenase subunit I' ;
up:shortName 'NDH subunit I' ;
rdf:type up:Structured_Name .
?name5 up:fullName 'NADH-plastoquinone oxidoreductase subunit I' ;
rdf:type up:Structured_Name .
?case6 up:classifiedWith GO:0016655 ,
GO:0019684 ,
keyword:521 ,
keyword:618 .
?case8 up:classifiedWith keyword:1003 ,
keyword:997 .
?case9 up:alternativeName ?name11 ,
?name12 ;
up:recommendedName ?name10 .
?name10 up:ecName '7.1.1.-' ;
up:fullName 'NAD(P)H-quinone oxidoreductase subunit I' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'NAD(P)H dehydrogenase I subunit I' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'NDH-1 subunit I' ;
up:shortName 'NDH-I' ;
rdf:type up:Structured_Name .
?case13 up:alternativeName ?name15 ,
?name16 ;
up:classifiedWith GO:0050136 ;
up:recommendedName ?name14 .
?name14 up:ecName '7.1.1.-' ;
up:fullName 'NADH-quinone oxidoreductase subunit I' ;
rdf:type up:Structured_Name .
?name15 up:fullName 'NADH dehydrogenase I subunit I' ;
rdf:type up:Structured_Name .
?name16 up:fullName 'NDH-1 subunit I' ;
rdf:type up:Structured_Name .
?case17 up:classifiedWith GO:0042651 .
?case18 up:classifiedWith keyword:793 .
?case20 up:classifiedWith keyword:1003 ,
keyword:997 .
?case21 up:classifiedWith GO:0009535 .
?case23 up:classifiedWith GO:0005886 .
?case25 up:classifiedWith keyword:830 .
?case27 up:classifiedWith keyword:1003 .
?pfs29 up:annotation ?annotation30 ,
?annotation36 ,
?annotation42 ,
?annotation48 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:49883 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:49883 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:49883 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:49883 .
?pfs54 up:annotation ?annotation55 ,
?annotation61 ,
?annotation67 ,
?annotation73 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:49883 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:49883 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:49883 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:49883 .
_:486869 a rdf:Statement ;
up:attribution _:486826 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:486870 a rdf:Statement ;
up:attribution _:486827 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:486871 a rdf:Statement ;
up:attribution _:486828 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:486872 a rdf:Statement ;
up:attribution _:486829 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:874 .
_:486873 a rdf:Statement ;
up:attribution _:486830 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:486874 a rdf:Statement ;
up:attribution _:486831 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:486875 a rdf:Statement ;
up:attribution _:486832 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:486876 a rdf:Statement ;
up:attribution _:486833 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:486877 a rdf:Statement ;
up:attribution _:486834 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:486878 a rdf:Statement ;
up:attribution _:486835 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1278 .
_:486879 a rdf:Statement ;
up:attribution _:486836 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:486880 a rdf:Statement ;
up:attribution _:486837 ;
rdf:subject ?case2 ;
rdf:predicate up:recommendedName ;
rdf:object ?name3 .
_:486881 a rdf:Statement ;
up:attribution _:486838 ;
rdf:subject ?case2 ;
rdf:predicate up:alternativeName ;
rdf:object ?name4 .
_:486882 a rdf:Statement ;
up:attribution _:486839 ;
rdf:subject ?case2 ;
rdf:predicate up:alternativeName ;
rdf:object ?name5 .
_:486883 a rdf:Statement ;
up:attribution _:486840 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:618 .
_:486884 a rdf:Statement ;
up:attribution _:486841 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:486885 a rdf:Statement ;
up:attribution _:486842 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016655 .
_:486886 a rdf:Statement ;
up:attribution _:486843 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019684 .
_:486887 a rdf:Statement ;
up:attribution _:486844 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:486888 a rdf:Statement ;
up:attribution _:486845 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:486889 a rdf:Statement ;
up:attribution _:486846 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:486890 a rdf:Statement ;
up:attribution _:486847 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:486891 a rdf:Statement ;
up:attribution _:486848 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:486892 a rdf:Statement ;
up:attribution _:486849 ;
rdf:subject ?case13 ;
rdf:predicate up:recommendedName ;
rdf:object ?name14 .
_:486893 a rdf:Statement ;
up:attribution _:486850 ;
rdf:subject ?case13 ;
rdf:predicate up:alternativeName ;
rdf:object ?name15 .
_:486894 a rdf:Statement ;
up:attribution _:486851 ;
rdf:subject ?case13 ;
rdf:predicate up:alternativeName ;
rdf:object ?name16 .
_:486895 a rdf:Statement ;
up:attribution _:486852 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050136 .
_:486896 a rdf:Statement ;
up:attribution _:486853 ;
rdf:subject ?case17 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042651 .
_:486897 a rdf:Statement ;
up:attribution _:486854 ;
rdf:subject ?case18 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:793 .
_:486898 a rdf:Statement ;
up:attribution _:486855 ;
rdf:subject ?case20 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:486899 a rdf:Statement ;
up:attribution _:486856 ;
rdf:subject ?case20 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:486900 a rdf:Statement ;
up:attribution _:486857 ;
rdf:subject ?case21 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009535 .
_:486901 a rdf:Statement ;
up:attribution _:486858 ;
rdf:subject ?case23 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:486902 a rdf:Statement ;
up:attribution _:486859 ;
rdf:subject ?case25 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:830 .
_:486903 a rdf:Statement ;
up:attribution _:486860 ;
rdf:subject ?case27 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:486904 a rdf:Statement ;
up:source unirule:MF_01351 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:486905 a rdf:Statement ;
up:attribution _:486861 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:486906 a rdf:Statement ;
up:source unirule:MF_01351 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:486907 a rdf:Statement ;
up:attribution _:486862 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:486908 a rdf:Statement ;
up:source unirule:MF_01351 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:486909 a rdf:Statement ;
up:attribution _:486863 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:486910 a rdf:Statement ;
up:source unirule:MF_01351 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:486911 a rdf:Statement ;
up:attribution _:486864 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:486912 a rdf:Statement ;
up:source unirule:MF_01351 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:486913 a rdf:Statement ;
up:attribution _:486865 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:486914 a rdf:Statement ;
up:source unirule:MF_01351 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:486915 a rdf:Statement ;
up:attribution _:486866 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:486916 a rdf:Statement ;
up:source unirule:MF_01351 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:486917 a rdf:Statement ;
up:attribution _:486867 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:486918 a rdf:Statement ;
up:source unirule:MF_01351 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:486919 a rdf:Statement ;
up:attribution _:486868 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01351
#Rule MF_01351 Created by:? on:2006-06-23 Modified by:Catherine Rivoire on:2025-09-18
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01351 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this rdfs:seeAlso signature:MF_01351 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_01351a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_01351a1')) AS ?annotation1) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionQ5622484 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5622486 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ56224MF_0135179 .
?templateMotifSequenceMatchRegionQ5622484 faldo:begin ?templateMotifSequenceMatchBeginQ5622485 .
?templateMotifSequenceMatchBeginQ5622485 faldo:position ?templateMotifSequenceMatchBeginPositionQ5622480 ;
faldo:reference isoform:Q56224-1 .
?templateMotifSequenceProfileAlignmentOperationQ5622486 edam:has_input signature:MF_01351 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0135190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ56224MF_0135181 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0135189 .
?targetMotifMatchRegionMatchBeginMF_0135189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0135182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0135190 edam:has_input signature:MF_01351 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56224MF_0135179, 1, (STRLEN(?templateMotifCigarQ56224MF_0135179) - STRLEN(REPLACE(?templateMotifCigarQ56224MF_0135179, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionQ5622480) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56224MF_0135181, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_0135181) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_0135181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56224MF_0135181, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_0135181) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_0135181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0135182) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56224MF_0135179, 1, (STRLEN(?templateMotifCigarQ56224MF_0135179) - STRLEN(REPLACE(?templateMotifCigarQ56224MF_0135179, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionQ5622480) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56224MF_0135181, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_0135181) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_0135181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56224MF_0135181, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_0135181) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_0135181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0135182) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56224MF_0135179, 1, (STRLEN(?templateMotifCigarQ56224MF_0135179) - STRLEN(REPLACE(?templateMotifCigarQ56224MF_0135179, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionQ5622480) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56224MF_0135181, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_0135181) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_0135181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56224MF_0135181, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_0135181) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_0135181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0135182) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56224MF_0135179, 1, (STRLEN(?templateMotifCigarQ56224MF_0135179) - STRLEN(REPLACE(?templateMotifCigarQ56224MF_0135179, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionQ5622480) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56224MF_0135181, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_0135181) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_0135181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56224MF_0135181, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_0135181) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_0135181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0135182) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'C')) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionQ56224108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ56224110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ56224MF_01351103 .
?templateMotifSequenceMatchRegionQ56224108 faldo:begin ?templateMotifSequenceMatchBeginQ56224109 .
?templateMotifSequenceMatchBeginQ56224109 faldo:position ?templateMotifSequenceMatchBeginPositionQ56224104 ;
faldo:reference isoform:Q56224-1 .
?templateMotifSequenceProfileAlignmentOperationQ56224110 edam:has_input signature:MF_01351 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01351114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ56224MF_01351105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01351113 .
?targetMotifMatchRegionMatchBeginMF_01351113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01351106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01351114 edam:has_input signature:MF_01351 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56224MF_01351103, 1, (STRLEN(?templateMotifCigarQ56224MF_01351103) - STRLEN(REPLACE(?templateMotifCigarQ56224MF_01351103, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionQ56224104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56224MF_01351105, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_01351105) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_01351105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56224MF_01351105, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_01351105) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_01351105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_01351106) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs2t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56224MF_01351103, 1, (STRLEN(?templateMotifCigarQ56224MF_01351103) - STRLEN(REPLACE(?templateMotifCigarQ56224MF_01351103, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ56224104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56224MF_01351105, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_01351105) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_01351105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56224MF_01351105, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_01351105) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_01351105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_01351106) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs2t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56224MF_01351103, 1, (STRLEN(?templateMotifCigarQ56224MF_01351103) - STRLEN(REPLACE(?templateMotifCigarQ56224MF_01351103, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionQ56224104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56224MF_01351105, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_01351105) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_01351105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56224MF_01351105, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_01351105) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_01351105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_01351106) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs2t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56224MF_01351103, 1, (STRLEN(?templateMotifCigarQ56224MF_01351103) - STRLEN(REPLACE(?templateMotifCigarQ56224MF_01351103, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionQ56224104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56224MF_01351105, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_01351105) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_01351105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56224MF_01351105, 1, (STRLEN(?targetMotifMatchCigarQ56224MF_01351105) - STRLEN(REPLACE(?targetMotifMatchCigarQ56224MF_01351105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01351106) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs2t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'C')) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case2) .
BIND(URI(CONCAT(STR(?this), '#MF_01351a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01351a4')) AS ?name4) .
BIND(URI(CONCAT(STR(?this), '#MF_01351a5')) AS ?name5) .
}
OPTIONAL {
?this a up:Protein .
{
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
}
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:188787 .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33071 .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_01351a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_01351a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_01351a12')) AS ?name12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1117 .
})) .
BIND(?this AS ?case13) .
BIND(URI(CONCAT(STR(?this), '#MF_01351a14')) AS ?name14) .
BIND(URI(CONCAT(STR(?this), '#MF_01351a15')) AS ?name15) .
BIND(URI(CONCAT(STR(?this), '#MF_01351a16')) AS ?name16) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33071 .
})) .
BIND(?this AS ?case17) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33071 .
})) .
} UNION {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
}
BIND(?this AS ?case18) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33071 .
})) .
BIND(?this AS ?case19) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
{
?this up:proteome |
| http://purl.uniprot.org/unirules/MF_01351 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01351#construct |