| http://purl.uniprot.org/unirules/MF_01408#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:509422 up:source unirule:MF_01408 .
_:509423 up:source unirule:MF_01408 .
_:509424 up:source unirule:MF_01408 .
_:509425 up:source unirule:MF_01408 .
_:509426 up:source unirule:MF_01408 .
_:509427 up:source unirule:MF_01408 .
_:509428 up:source unirule:MF_01408 .
_:509429 up:source unirule:MF_01408 .
_:509430 up:source unirule:MF_01408 .
_:509431 up:source unirule:MF_01408 .
_:509432 up:source unirule:MF_01408 .
_:509433 up:source unirule:MF_01408 .
_:509434 up:source unirule:MF_01408 .
_:509435 up:source unirule:MF_01408 .
_:509436 up:source unirule:MF_01408 .
_:509437 up:source unirule:MF_01408 .
_:509438 up:source unirule:MF_01408 .
_:509439 up:source unirule:MF_01408 .
_:509440 up:source unirule:MF_01408 .
_:509441 up:source unirule:MF_01408 .
_:509442 up:source unirule:MF_01408 .
_:509443 up:source unirule:MF_01408 .
_:509444 up:source unirule:MF_01408 .
_:509445 up:source unirule:MF_01408 .
_:509446 up:source unirule:MF_01408 .
_:509447 up:source unirule:MF_01408 .
_:509448 up:source unirule:MF_01408 .
_:509449 up:source unirule:MF_01408 .
_:509450 up:source unirule:MF_01408 .
_:509451 up:source unirule:MF_01408 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0006231 ,
GO:0006235 ,
GO:0050797 ,
keyword:274 ,
keyword:285 ,
keyword:489 ,
keyword:521 ,
keyword:545 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.148' ;
up:fullName 'Flavin-dependent thymidylate synthase' ;
up:shortName 'FDTS' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'FAD-dependent thymidylate synthase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Thymidylate synthase ThyX' ;
up:shortName 'TS' ,
'TSase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'thyX' .
?annotation4 a up:Function_Annotation ;
rdfs:comment "Catalyzes the reductive methylation of 2'-deoxyuridine-5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant." .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:57692 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 4 FAD per tetramer. Each FAD binding site is formed by three monomers.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Pyrimidine metabolism; dTTP biosynthesis.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the thymidylate synthase ThyX family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:246422 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:57692 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:57692 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:246422 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Involved in ionization of N3 of dUMP, leading to its activation' .
?pfsb41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:57692 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:57692 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:57692 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:246422 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf chebi:246422 .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf chebi:246422 .
_:509452 a rdf:Statement ;
up:attribution _:509422 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:509453 a rdf:Statement ;
up:attribution _:509423 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:509454 a rdf:Statement ;
up:attribution _:509424 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:509455 a rdf:Statement ;
up:attribution _:509425 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:509456 a rdf:Statement ;
up:attribution _:509426 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:509457 a rdf:Statement ;
up:attribution _:509427 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:509458 a rdf:Statement ;
up:attribution _:509428 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:509459 a rdf:Statement ;
up:attribution _:509429 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:509460 a rdf:Statement ;
up:attribution _:509430 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:509461 a rdf:Statement ;
up:attribution _:509431 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:509462 a rdf:Statement ;
up:attribution _:509432 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:509463 a rdf:Statement ;
up:attribution _:509433 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:509464 a rdf:Statement ;
up:attribution _:509434 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:545 .
_:509465 a rdf:Statement ;
up:attribution _:509435 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:509466 a rdf:Statement ;
up:attribution _:509436 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:509467 a rdf:Statement ;
up:attribution _:509437 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:509468 a rdf:Statement ;
up:attribution _:509438 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050797 .
_:509469 a rdf:Statement ;
up:attribution _:509439 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006231 .
_:509470 a rdf:Statement ;
up:attribution _:509440 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006235 .
_:509471 a rdf:Statement ;
up:source unirule:MF_01408 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:509472 a rdf:Statement ;
up:attribution _:509441 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:509473 a rdf:Statement ;
up:source unirule:MF_01408 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:509474 a rdf:Statement ;
up:attribution _:509442 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:509475 a rdf:Statement ;
up:source unirule:MF_01408 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:509476 a rdf:Statement ;
up:attribution _:509443 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:509477 a rdf:Statement ;
up:source unirule:MF_01408 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:509478 a rdf:Statement ;
up:attribution _:509444 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:509479 a rdf:Statement ;
up:source unirule:MF_01408 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:509480 a rdf:Statement ;
up:attribution _:509445 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:509481 a rdf:Statement ;
up:source unirule:MF_01408 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:509482 a rdf:Statement ;
up:attribution _:509446 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:509483 a rdf:Statement ;
up:source unirule:MF_01408 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:509484 a rdf:Statement ;
up:attribution _:509447 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:509485 a rdf:Statement ;
up:source unirule:MF_01408 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:509486 a rdf:Statement ;
up:attribution _:509448 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:509487 a rdf:Statement ;
up:source unirule:MF_01408 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:509488 a rdf:Statement ;
up:attribution _:509449 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:509489 a rdf:Statement ;
up:source unirule:MF_01408 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:509490 a rdf:Statement ;
up:attribution _:509450 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:509491 a rdf:Statement ;
up:source unirule:MF_01408 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:509492 a rdf:Statement ;
up:attribution _:509451 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01408
#Rule MF_01408 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon87 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01408 .
?thisOrganism rdfs:subClassOf+ ?supertaxon87 .
BIND(URI(CONCAT(STR(?this), '#MF_01408a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionQ9WYT093 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYT095 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYT0MF_0140888 .
?templateMotifSequenceMatchRegionQ9WYT093 faldo:begin ?templateMotifSequenceMatchBeginQ9WYT094 .
?templateMotifSequenceMatchBeginQ9WYT094 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYT089 ;
faldo:reference isoform:Q9WYT0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYT095 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0140899 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYT0MF_0140890 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0140898 .
?targetMotifMatchRegionMatchBeginMF_0140898 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0140891 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0140899 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_4) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_0140888, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_0140888) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_0140888, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionQ9WYT089) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_0140890, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_0140890) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_0140890, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_0140890, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_0140890) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_0140890, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0140891) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_0140888, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_0140888) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_0140888, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionQ9WYT089) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_0140890, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_0140890) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_0140890, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_0140890, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_0140890) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_0140890, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0140891) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('[EQ][ARNDCQEGHILKMFPSTWYVBZJUOX]S[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionQ9WYT0110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYT0112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYT0MF_01408105 .
?templateMotifSequenceMatchRegionQ9WYT0110 faldo:begin ?templateMotifSequenceMatchBeginQ9WYT0111 .
?templateMotifSequenceMatchBeginQ9WYT0111 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYT0106 ;
faldo:reference isoform:Q9WYT0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYT0112 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01408116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYT0MF_01408107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01408115 .
?targetMotifMatchRegionMatchBeginMF_01408115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01408108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01408116 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408105, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408105) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408105, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionQ9WYT0106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408107, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408107) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408107, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408107) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01408108) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408105, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408105) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408105, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionQ9WYT0106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408107, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408107) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408107, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408107) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_01408108) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs2t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionQ9WYT0127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYT0129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYT0MF_01408122 .
?templateMotifSequenceMatchRegionQ9WYT0127 faldo:begin ?templateMotifSequenceMatchBeginQ9WYT0128 .
?templateMotifSequenceMatchBeginQ9WYT0128 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYT0123 ;
faldo:reference isoform:Q9WYT0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYT0129 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01408133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYT0MF_01408124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01408132 .
?targetMotifMatchRegionMatchBeginMF_01408132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01408125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01408133 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408122, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408122) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408122, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionQ9WYT0123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408124, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408124) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408124, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408124) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_01408125) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408122, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408122) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408122, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionQ9WYT0123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408124, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408124) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408124, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408124) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_01408125) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs2t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER (REGEX('[ND][ARNDCQEGHILKMFPSTWYVBZJUOX][RHN]', SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionQ9WYT0144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYT0146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYT0MF_01408139 .
?templateMotifSequenceMatchRegionQ9WYT0144 faldo:begin ?templateMotifSequenceMatchBeginQ9WYT0145 .
?templateMotifSequenceMatchBeginQ9WYT0145 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYT0140 ;
faldo:reference isoform:Q9WYT0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYT0146 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01408150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYT0MF_01408141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01408149 .
?targetMotifMatchRegionMatchBeginMF_01408149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01408142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01408150 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408139, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408139) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408139, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionQ9WYT0140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408141, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408141) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408141, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408141) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_01408142) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408139, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408139) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408139, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionQ9WYT0140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408141, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408141) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408141, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408141) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01408142) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER (REGEX('[QE][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionQ9WYT0161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYT0163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYT0MF_01408156 .
?templateMotifSequenceMatchRegionQ9WYT0161 faldo:begin ?templateMotifSequenceMatchBeginQ9WYT0162 .
?templateMotifSequenceMatchBeginQ9WYT0162 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYT0157 ;
faldo:reference isoform:Q9WYT0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYT0163 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01408167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYT0MF_01408158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01408166 .
?targetMotifMatchRegionMatchBeginMF_01408166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01408159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01408167 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408156, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408156) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408156, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionQ9WYT0157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408158, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408158) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408158, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408158) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01408159) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs2t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionQ9WYT0176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYT0178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYT0MF_01408171 .
?templateMotifSequenceMatchRegionQ9WYT0176 faldo:begin ?templateMotifSequenceMatchBeginQ9WYT0177 .
?templateMotifSequenceMatchBeginQ9WYT0177 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYT0172 ;
faldo:reference isoform:Q9WYT0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYT0178 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01408182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYT0MF_01408173 .
?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01408181 .
?targetMotifMatchRegionMatchBeginMF_01408181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01408174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01408182 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408171, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408171) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408171, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionQ9WYT0172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408173, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408173) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408173, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408173) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_01408174) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs2t185) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionQ9WYT0191 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYT0193 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYT0MF_01408186 .
?templateMotifSequenceMatchRegionQ9WYT0191 faldo:begin ?templateMotifSequenceMatchBeginQ9WYT0192 .
?templateMotifSequenceMatchBeginQ9WYT0192 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYT0187 ;
faldo:reference isoform:Q9WYT0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYT0193 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01408197 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYT0MF_01408188 .
?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01408196 .
?targetMotifMatchRegionMatchBeginMF_01408196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01408189 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01408197 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408186, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408186) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408186, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionQ9WYT0187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408188, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408188) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408188, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408188) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_01408189) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs2t200) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER (REGEX('[EQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionQ9WYT0206 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYT0208 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYT0MF_01408201 .
?templateMotifSequenceMatchRegionQ9WYT0206 faldo:begin ?templateMotifSequenceMatchBeginQ9WYT0207 .
?templateMotifSequenceMatchBeginQ9WYT0207 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYT0202 ;
faldo:reference isoform:Q9WYT0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYT0208 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01408212 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYT0MF_01408203 .
?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01408211 .
?targetMotifMatchRegionMatchBeginMF_01408211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01408204 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01408212 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408201, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408201) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408201, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionQ9WYT0202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408203, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408203) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408203, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408203) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_01408204) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs2t215) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER (REGEX('[NH]', SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch220 faldo:location ?templateMotifSequenceMatchRegionQ9WYT0221 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYT0223 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYT0MF_01408216 .
?templateMotifSequenceMatchRegionQ9WYT0221 faldo:begin ?templateMotifSequenceMatchBeginQ9WYT0222 .
?templateMotifSequenceMatchBeginQ9WYT0222 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYT0217 ;
faldo:reference isoform:Q9WYT0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYT0223 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
?targetMotifMatch224 faldo:location ?targetMotifMatchRegionMatch225 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01408227 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYT0MF_01408218 .
?targetMotifMatchRegionMatch225 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01408226 .
?targetMotifMatchRegionMatchBeginMF_01408226 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01408219 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01408227 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408216, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408216) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408216, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionQ9WYT0217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1228) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408218, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408218) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408218, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408218) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), '')))), '[^-]', ''))) AS ?step2229) .
BIND(((?step2229 + ?targetMotifMatchRegionMatchBeginPositionMF_01408219) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs2t230) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER (REGEX('[RKH]', SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch235 faldo:location ?templateMotifSequenceMatchRegionQ9WYT0236 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYT0238 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYT0MF_01408231 .
?templateMotifSequenceMatchRegionQ9WYT0236 faldo:begin ?templateMotifSequenceMatchBeginQ9WYT0237 .
?templateMotifSequenceMatchBeginQ9WYT0237 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYT0232 ;
faldo:reference isoform:Q9WYT0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYT0238 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
?targetMotifMatch239 faldo:location ?targetMotifMatchRegionMatch240 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01408242 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYT0MF_01408233 .
?targetMotifMatchRegionMatch240 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01408241 .
?targetMotifMatchRegionMatchBeginMF_01408241 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01408234 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01408242 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408231, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408231) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408231, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionQ9WYT0232) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408233, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408233) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408233, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408233) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) .
BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_01408234) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs2t245) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch250 faldo:location ?templateMotifSequenceMatchRegionQ9WYT0251 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYT0253 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYT0MF_01408246 .
?templateMotifSequenceMatchRegionQ9WYT0251 faldo:begin ?templateMotifSequenceMatchBeginQ9WYT0252 .
?templateMotifSequenceMatchBeginQ9WYT0252 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYT0247 ;
faldo:reference isoform:Q9WYT0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYT0253 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
?targetMotifMatch254 faldo:location ?targetMotifMatchRegionMatch255 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01408257 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYT0MF_01408248 .
?targetMotifMatchRegionMatch255 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01408256 .
?targetMotifMatchRegionMatchBeginMF_01408256 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01408249 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01408257 edam:has_input signature:MF_01408 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408246, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408246) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408246, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionQ9WYT0247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408248, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408248) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408248, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408248) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) .
BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_01408249) - 1) AS ?thisPositionOn85) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYT0MF_01408246, 1, (STRLEN(?templateMotifCigarQ9WYT0MF_01408246) - STRLEN(REPLACE(?templateMotifCigarQ9WYT0MF_01408246, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionQ9WYT0247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408248, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408248) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYT0MF_01408248, 1, (STRLEN(?targetMotifMatchCigarQ9WYT0MF_01408248) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYT0MF_01408248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_01408249) - 1) AS ?thisPositionOn86) .
BIND(?this AS ?pfs3t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) .
FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn85, (?thisPositionOn86 - ?thisPositionOn85)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01408a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
}
"xsd:string |
