| http://purl.uniprot.org/unirules/MF_01588#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:574455 up:source unirule:MF_01588 .
_:574456 up:source unirule:MF_01588 .
_:574457 up:source unirule:MF_01588 .
_:574458 up:source unirule:MF_01588 .
_:574459 up:source unirule:MF_01588 .
_:574460 up:source unirule:MF_01588 .
_:574461 up:source unirule:MF_01588 .
_:574462 up:source unirule:MF_01588 .
_:574463 up:source unirule:MF_01588 .
_:574464 up:source unirule:MF_01588 .
_:574465 up:source unirule:MF_01588 .
_:574466 up:source unirule:MF_01588 .
_:574467 up:source unirule:MF_01588 .
_:574468 up:source unirule:MF_01588 .
_:574469 up:source unirule:MF_01588 .
_:574470 up:source unirule:MF_01588 .
_:574471 up:source unirule:MF_01588 .
_:574472 up:source unirule:MF_01588 .
_:574473 up:source unirule:MF_01588 .
_:574474 up:source unirule:MF_01588 .
_:574475 up:source unirule:MF_01588 .
_:574476 up:source unirule:MF_01588 .
_:574477 up:source unirule:MF_01588 .
_:574478 up:source unirule:MF_01588 .
_:574479 up:source unirule:MF_01588 .
_:574480 up:source unirule:MF_01588 .
_:574481 up:source unirule:MF_01588 .
_:574482 up:source unirule:MF_01588 .
_:574483 up:source unirule:MF_01588 .
_:574484 up:source unirule:MF_01588 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0003911 ,
GO:0006259 ,
keyword:227 ,
keyword:234 ,
keyword:235 ,
keyword:436 ,
keyword:460 ,
keyword:464 ,
keyword:479 ,
keyword:520 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.5.1.2' ;
up:fullName 'DNA ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Polydeoxyribonucleotide synthase [NAD(+)]' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'ligA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 up:cofactor chebi:18420 ,
chebi:29035 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NAD-dependent DNA ligase family. LigA subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:57540 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:57540 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'N6-AMP-lysine intermediate' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:29105 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:29105 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:29105 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:29105 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:57540 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:57540 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:57540 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:57540 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:57540 .
_:574485 a rdf:Statement ;
up:attribution _:574455 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:574486 a rdf:Statement ;
up:attribution _:574456 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:574487 a rdf:Statement ;
up:attribution _:574457 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:574488 a rdf:Statement ;
up:attribution _:574458 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:574489 a rdf:Statement ;
up:attribution _:574459 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:574490 a rdf:Statement ;
up:attribution _:574460 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:574491 a rdf:Statement ;
up:attribution _:574461 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:574492 a rdf:Statement ;
up:attribution _:574462 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:574493 a rdf:Statement ;
up:attribution _:574463 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:574494 a rdf:Statement ;
up:attribution _:574464 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:574495 a rdf:Statement ;
up:attribution _:574465 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:574496 a rdf:Statement ;
up:attribution _:574466 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:574497 a rdf:Statement ;
up:attribution _:574467 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:574498 a rdf:Statement ;
up:attribution _:574468 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:574499 a rdf:Statement ;
up:attribution _:574469 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:574500 a rdf:Statement ;
up:attribution _:574470 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:574501 a rdf:Statement ;
up:attribution _:574471 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003911 .
_:574502 a rdf:Statement ;
up:attribution _:574472 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006259 .
_:574503 a rdf:Statement ;
up:source unirule:MF_01588 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:574504 a rdf:Statement ;
up:attribution _:574473 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:574505 a rdf:Statement ;
up:source unirule:MF_01588 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:574506 a rdf:Statement ;
up:attribution _:574474 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:574507 a rdf:Statement ;
up:source unirule:MF_01588 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:574508 a rdf:Statement ;
up:attribution _:574475 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:574509 a rdf:Statement ;
up:source unirule:MF_01588 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:574510 a rdf:Statement ;
up:attribution _:574476 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:574511 a rdf:Statement ;
up:source unirule:MF_01588 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:574512 a rdf:Statement ;
up:attribution _:574477 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:574513 a rdf:Statement ;
up:source unirule:MF_01588 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:574514 a rdf:Statement ;
up:attribution _:574478 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:574515 a rdf:Statement ;
up:source unirule:MF_01588 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:574516 a rdf:Statement ;
up:attribution _:574479 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:574517 a rdf:Statement ;
up:source unirule:MF_01588 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:574518 a rdf:Statement ;
up:attribution _:574480 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:574519 a rdf:Statement ;
up:source unirule:MF_01588 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:574520 a rdf:Statement ;
up:attribution _:574481 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:574521 a rdf:Statement ;
up:source unirule:MF_01588 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:574522 a rdf:Statement ;
up:attribution _:574482 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:574523 a rdf:Statement ;
up:source unirule:MF_01588 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:574524 a rdf:Statement ;
up:attribution _:574483 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:574525 a rdf:Statement ;
up:source unirule:MF_01588 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:574526 a rdf:Statement ;
up:attribution _:574484 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01588
#Rule MF_01588 Created by:? on:2007-11-16 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon91 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01588 .
?thisOrganism rdfs:subClassOf+ ?supertaxon91 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01577 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionQ837V697 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V699 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837V6MF_0158892 .
?templateMotifSequenceMatchRegionQ837V697 faldo:begin ?templateMotifSequenceMatchBeginQ837V698 .
?templateMotifSequenceMatchBeginQ837V698 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V693 ;
faldo:reference isoform:Q837V6-1 .
?templateMotifSequenceProfileAlignmentOperationQ837V699 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837V6MF_0158894 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588102 .
?targetMotifMatchRegionMatchBeginMF_01588102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0158895 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01588103 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_0158892, 1, (STRLEN(?templateMotifCigarQ837V6MF_0158892) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_0158892, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionQ837V693) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_0158894, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_0158894) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_0158894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_0158894, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_0158894) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_0158894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0158895) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_0158892, 1, (STRLEN(?templateMotifCigarQ837V6MF_0158892) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_0158892, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionQ837V693) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_0158894, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_0158894) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_0158894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_0158894, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_0158894) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_0158894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0158895) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][YF]D', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionQ837V6114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837V6MF_01588109 .
?templateMotifSequenceMatchRegionQ837V6114 faldo:begin ?templateMotifSequenceMatchBeginQ837V6115 .
?templateMotifSequenceMatchBeginQ837V6115 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6110 ;
faldo:reference isoform:Q837V6-1 .
?templateMotifSequenceProfileAlignmentOperationQ837V6116 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837V6MF_01588111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588119 .
?targetMotifMatchRegionMatchBeginMF_01588119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01588120 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588109, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588109) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588109, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionQ837V6110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588111, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588111) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588111, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588111) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_01588112) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588109, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588109) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588109, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionQ837V6110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588111, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588111) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588111, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588111) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_01588112) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionQ837V6131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837V6MF_01588126 .
?templateMotifSequenceMatchRegionQ837V6131 faldo:begin ?templateMotifSequenceMatchBeginQ837V6132 .
?templateMotifSequenceMatchBeginQ837V6132 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6127 ;
faldo:reference isoform:Q837V6-1 .
?templateMotifSequenceProfileAlignmentOperationQ837V6133 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837V6MF_01588128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588136 .
?targetMotifMatchRegionMatchBeginMF_01588136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01588137 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588126, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588126) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588126, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionQ837V6127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588128, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588128) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588128, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588128) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_01588129) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionQ837V6146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837V6MF_01588141 .
?templateMotifSequenceMatchRegionQ837V6146 faldo:begin ?templateMotifSequenceMatchBeginQ837V6147 .
?templateMotifSequenceMatchBeginQ837V6147 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6142 ;
faldo:reference isoform:Q837V6-1 .
?templateMotifSequenceProfileAlignmentOperationQ837V6148 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837V6MF_01588143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588151 .
?targetMotifMatchRegionMatchBeginMF_01588151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01588152 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588141, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588141) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588141, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionQ837V6142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588143, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588143) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588143, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588143) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01588144) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionQ837V6161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837V6MF_01588156 .
?templateMotifSequenceMatchRegionQ837V6161 faldo:begin ?templateMotifSequenceMatchBeginQ837V6162 .
?templateMotifSequenceMatchBeginQ837V6162 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6157 ;
faldo:reference isoform:Q837V6-1 .
?templateMotifSequenceProfileAlignmentOperationQ837V6163 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837V6MF_01588158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588166 .
?targetMotifMatchRegionMatchBeginMF_01588166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01588167 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588156, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588156) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588156, CONCAT('^(?:-*[^-]){', STR(((412 - ?templateMotifSequenceMatchBeginPositionQ837V6157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588158, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588158) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588158, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588158) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01588159) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionQ837V6176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837V6MF_01588171 .
?templateMotifSequenceMatchRegionQ837V6176 faldo:begin ?templateMotifSequenceMatchBeginQ837V6177 .
?templateMotifSequenceMatchBeginQ837V6177 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6172 ;
faldo:reference isoform:Q837V6-1 .
?templateMotifSequenceProfileAlignmentOperationQ837V6178 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837V6MF_01588173 .
?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588181 .
?targetMotifMatchRegionMatchBeginMF_01588181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01588182 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588171, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588171) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588171, CONCAT('^(?:-*[^-]){', STR(((427 - ?templateMotifSequenceMatchBeginPositionQ837V6172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588173, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588173) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588173, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588173) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_01588174) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t185) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionQ837V6191 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6193 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837V6MF_01588186 .
?templateMotifSequenceMatchRegionQ837V6191 faldo:begin ?templateMotifSequenceMatchBeginQ837V6192 .
?templateMotifSequenceMatchBeginQ837V6192 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6187 ;
faldo:reference isoform:Q837V6-1 .
?templateMotifSequenceProfileAlignmentOperationQ837V6193 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588197 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837V6MF_01588188 .
?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588196 .
?targetMotifMatchRegionMatchBeginMF_01588196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588189 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01588197 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588186, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588186) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588186, CONCAT('^(?:-*[^-]){', STR(((432 - ?templateMotifSequenceMatchBeginPositionQ837V6187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588188, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588188) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588188, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588188) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_01588189) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t200) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionQ837V6206 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6208 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837V6MF_01588201 .
?templateMotifSequenceMatchRegionQ837V6206 faldo:begin ?templateMotifSequenceMatchBeginQ837V6207 .
?templateMotifSequenceMatchBeginQ837V6207 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6202 ;
faldo:reference isoform:Q837V6-1 .
?templateMotifSequenceProfileAlignmentOperationQ837V6208 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588212 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837V6MF_01588203 .
?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588211 .
?targetMotifMatchRegionMatchBeginMF_01588211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588204 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01588212 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588201, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588201) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588201, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionQ837V6202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588203, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588203) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588203, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588203) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_01588204) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t215) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch220 faldo:location ?templateMotifSequenceMatchRegionQ837V6221 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6223 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837V6MF_01588216 .
?templateMotifSequenceMatchRegionQ837V6221 faldo:begin ?templateMotifSequenceMatchBeginQ837V6222 .
?templateMotifSequenceMatchBeginQ837V6222 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6217 ;
faldo:reference isoform:Q837V6-1 .
?templateMotifSequenceProfileAlignmentOperationQ837V6223 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
?targetMotifMatch224 faldo:location ?targetMotifMatchRegionMatch225 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588227 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837V6MF_01588218 .
?targetMotifMatchRegionMatch225 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588226 .
?targetMotifMatchRegionMatchBeginMF_01588226 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588219 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01588227 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588216, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588216) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588216, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionQ837V6217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1228) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588218, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588218) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588218, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588218) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), '')))), '[^-]', ''))) AS ?step2229) .
BIND(((?step2229 + ?targetMotifMatchRegionMatchBeginPositionMF_01588219) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t230) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch235 faldo:location ?templateMotifSequenceMatchRegionQ837V6236 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6238 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837V6MF_01588231 .
?templateMotifSequenceMatchRegionQ837V6236 faldo:begin ?templateMotifSequenceMatchBeginQ837V6237 .
?templateMotifSequenceMatchBeginQ837V6237 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6232 ;
faldo:reference isoform:Q837V6-1 .
?templateMotifSequenceProfileAlignmentOperationQ837V6238 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
?targetMotifMatch239 faldo:location ?targetMotifMatchRegionMatch240 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588242 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837V6MF_01588233 .
?targetMotifMatchRegionMatch240 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588241 .
?targetMotifMatchRegionMatchBeginMF_01588241 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588234 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01588242 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588231, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588231) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588231, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ837V6232) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588233, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588233) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588233, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588233) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) .
BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_01588234) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t245) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch250 faldo:location ?templateMotifSequenceMatchRegionQ837V6251 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6253 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837V6MF_01588246 .
?templateMotifSequenceMatchRegionQ837V6251 faldo:begin ?templateMotifSequenceMatchBeginQ837V6252 .
?templateMotifSequenceMatchBeginQ837V6252 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6247 ;
faldo:reference isoform:Q837V6-1 .
?templateMotifSequenceProfileAlignmentOperationQ837V6253 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
?targetMotifMatch254 faldo:location ?targetMotifMatchRegionMatch255 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588257 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837V6MF_01588248 .
?targetMotifMatchRegionMatch255 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588256 .
?targetMotifMatchRegionMatchBeginMF_01588256 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588249 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01588257 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588246, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588246) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588246, CONCAT('^(?:-*[^-]){', STR(((291 - ?templateMotifSequenceMatchBeginPositionQ837V6247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588248, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588248) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588248, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588248) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) .
BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_01588249) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t260) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch265 faldo:location ?templateMotifSequenceMatchRegionQ837V6266 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6268 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837V6MF_01588261 .
?templateMotifSequenceMatchRegionQ837V6266 faldo:begin ?templateMotifSequenceMatchBeginQ837V6267 .
?templateMotifSequenceMatchBeginQ837V6267 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6262 ;
faldo:reference isoform:Q837V6-1 .
?templateMotifSequenceProfileAlignmentOperationQ837V6268 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
?targetMotifMatch269 faldo:location ?targetMotifMatchRegionMatch270 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588272 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837V6MF_01588263 .
?targetMotifMatchRegionMatch270 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588271 .
?targetMotifMatchRegionMatchBeginMF_01588271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588264 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01588272 edam:has_input signature:MF_01588 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588261, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588261) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588261, CONCAT('^(?:-*[^-]){', STR(((315 - ?templateMotifSequenceMatchBeginPositionQ837V6262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1273) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588263, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588263) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588263, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588263) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), '')))), '[^-]', ''))) AS ?step2274) .
BIND(((?step2274 + ?targetMotifMatchRegionMatchBeginPositionMF_01588264) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t275) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01588a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
}
"xsd:string |
