| http://purl.uniprot.org/unirules/MF_01697#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:621287 up:source unirule:MF_01697 .
_:621288 up:source unirule:MF_01697 .
_:621289 up:source unirule:MF_01697 .
_:621290 up:source unirule:MF_01697 .
_:621291 up:source unirule:MF_01697 .
_:621292 up:source unirule:MF_01697 .
_:621293 up:source unirule:MF_01697 .
_:621294 up:source unirule:MF_01697 .
_:621295 up:source unirule:MF_01697 .
_:621296 up:source unirule:MF_01697 .
_:621297 up:source unirule:MF_01697 .
_:621298 up:source unirule:MF_01697 .
_:621299 up:source unirule:MF_01697 .
_:621300 up:source unirule:MF_01697 .
_:621301 up:source unirule:MF_01697 .
_:621302 up:source unirule:MF_01697 .
_:621303 up:source unirule:MF_01697 .
_:621304 up:source unirule:MF_01697 .
_:621305 up:source unirule:MF_01697 .
_:621306 up:source unirule:MF_01697 .
_:621307 up:source unirule:MF_01697 .
_:621308 up:source unirule:MF_01697 .
_:621309 up:source unirule:MF_01697 .
_:621310 up:source unirule:MF_01697 .
_:621311 up:source unirule:MF_01697 .
_:621312 up:source unirule:MF_01697 .
_:621313 up:source unirule:MF_01697 .
_:621314 up:source unirule:MF_01697 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0008270 ,
GO:0010125 ,
GO:0035446 ,
keyword:436 ,
keyword:479 ,
keyword:547 ,
keyword:67 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.1.13' ;
up:fullName 'L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase' ;
up:shortName 'L-Cys:GlcN-Ins ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Mycothiol ligase' ;
up:shortName 'MSH ligase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'mshC' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the ATP-dependent condensation of GlcN-Ins and L-cysteine to form L-Cys-GlcN-Ins.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 zinc ion per subunit.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:144924 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:144924 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:144924 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'HIGH' region" .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'ERGGDP' region" .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'KMSKS' region" .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:29105 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:29105 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:29105 .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf chebi:144924 .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf chebi:144924 .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf chebi:144924 .
_:621315 a rdf:Statement ;
up:attribution _:621287 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:621316 a rdf:Statement ;
up:attribution _:621288 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:621317 a rdf:Statement ;
up:attribution _:621289 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:621318 a rdf:Statement ;
up:attribution _:621290 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:621319 a rdf:Statement ;
up:attribution _:621291 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:621320 a rdf:Statement ;
up:attribution _:621292 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:621321 a rdf:Statement ;
up:attribution _:621293 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:621322 a rdf:Statement ;
up:attribution _:621294 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:621323 a rdf:Statement ;
up:attribution _:621295 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:621324 a rdf:Statement ;
up:attribution _:621296 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:621325 a rdf:Statement ;
up:attribution _:621297 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:621326 a rdf:Statement ;
up:attribution _:621298 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:621327 a rdf:Statement ;
up:attribution _:621299 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:621328 a rdf:Statement ;
up:attribution _:621300 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:621329 a rdf:Statement ;
up:attribution _:621301 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0035446 .
_:621330 a rdf:Statement ;
up:attribution _:621302 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010125 .
_:621331 a rdf:Statement ;
up:source unirule:MF_01697 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:621332 a rdf:Statement ;
up:attribution _:621303 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:621333 a rdf:Statement ;
up:source unirule:MF_01697 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:621334 a rdf:Statement ;
up:attribution _:621304 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:621335 a rdf:Statement ;
up:source unirule:MF_01697 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:621336 a rdf:Statement ;
up:attribution _:621305 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:621337 a rdf:Statement ;
up:source unirule:MF_01697 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:621338 a rdf:Statement ;
up:attribution _:621306 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:621339 a rdf:Statement ;
up:source unirule:MF_01697 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:621340 a rdf:Statement ;
up:attribution _:621307 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:621341 a rdf:Statement ;
up:source unirule:MF_01697 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:621342 a rdf:Statement ;
up:attribution _:621308 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:621343 a rdf:Statement ;
up:source unirule:MF_01697 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:621344 a rdf:Statement ;
up:attribution _:621309 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:621345 a rdf:Statement ;
up:source unirule:MF_01697 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:621346 a rdf:Statement ;
up:attribution _:621310 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:621347 a rdf:Statement ;
up:source unirule:MF_01697 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:621348 a rdf:Statement ;
up:attribution _:621311 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:621349 a rdf:Statement ;
up:source unirule:MF_01697 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:621350 a rdf:Statement ;
up:attribution _:621312 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:621351 a rdf:Statement ;
up:source unirule:MF_01697 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:621352 a rdf:Statement ;
up:attribution _:621313 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:621353 a rdf:Statement ;
up:source unirule:MF_01697 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:621354 a rdf:Statement ;
up:attribution _:621314 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01697
#Rule MF_01697 Created by:? on:2010-09-20 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01697 .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(URI(CONCAT(STR(?this), '#MF_01697a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionA0QZY095 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0QZY097 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0QZY0MF_0169790 .
?templateMotifSequenceMatchRegionA0QZY095 faldo:begin ?templateMotifSequenceMatchBeginA0QZY096 .
?templateMotifSequenceMatchBeginA0QZY096 faldo:position ?templateMotifSequenceMatchBeginPositionA0QZY091 ;
faldo:reference isoform:A0QZY0-1 .
?templateMotifSequenceProfileAlignmentOperationA0QZY097 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01697101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0QZY0MF_0169792 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01697100 .
?targetMotifMatchRegionMatchBeginMF_01697100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169793 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01697101 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_0169790, 1, (STRLEN(?templateMotifCigarA0QZY0MF_0169790) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_0169790, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionA0QZY091) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_0169792, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_0169792) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_0169792, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_0169792, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_0169792) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_0169792, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0169793) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_0169790, 1, (STRLEN(?templateMotifCigarA0QZY0MF_0169790) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_0169790, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionA0QZY091) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_0169792, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_0169792) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_0169792, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_0169792, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_0169792) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_0169792, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0169793) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'CGIT')) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionA0QZY0112 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0QZY0114 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0QZY0MF_01697107 .
?templateMotifSequenceMatchRegionA0QZY0112 faldo:begin ?templateMotifSequenceMatchBeginA0QZY0113 .
?templateMotifSequenceMatchBeginA0QZY0113 faldo:position ?templateMotifSequenceMatchBeginPositionA0QZY0108 ;
faldo:reference isoform:A0QZY0-1 .
?templateMotifSequenceProfileAlignmentOperationA0QZY0114 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01697118 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0QZY0MF_01697109 .
?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01697117 .
?targetMotifMatchRegionMatchBeginMF_01697117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01697110 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01697118 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697107, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697107) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697107, CONCAT('^(?:-*[^-]){', STR(((81 - ?templateMotifSequenceMatchBeginPositionA0QZY0108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697109, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697109) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697109, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697109) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_01697110) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697107, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697107) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697107, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionA0QZY0108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697109, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697109) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697109, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697109) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_01697110) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX]T', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionA0QZY0129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0QZY0131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0QZY0MF_01697124 .
?templateMotifSequenceMatchRegionA0QZY0129 faldo:begin ?templateMotifSequenceMatchBeginA0QZY0130 .
?templateMotifSequenceMatchBeginA0QZY0130 faldo:position ?templateMotifSequenceMatchBeginPositionA0QZY0125 ;
faldo:reference isoform:A0QZY0-1 .
?templateMotifSequenceProfileAlignmentOperationA0QZY0131 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01697135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0QZY0MF_01697126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01697134 .
?targetMotifMatchRegionMatchBeginMF_01697134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01697127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01697135 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697124, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697124) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697124, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionA0QZY0125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697126, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697126) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697126, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697126) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_01697127) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697124, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697124) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697124, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionA0QZY0125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697126, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697126) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697126, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697126) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_01697127) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionA0QZY0146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0QZY0148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0QZY0MF_01697141 .
?templateMotifSequenceMatchRegionA0QZY0146 faldo:begin ?templateMotifSequenceMatchBeginA0QZY0147 .
?templateMotifSequenceMatchBeginA0QZY0147 faldo:position ?templateMotifSequenceMatchBeginPositionA0QZY0142 ;
faldo:reference isoform:A0QZY0-1 .
?templateMotifSequenceProfileAlignmentOperationA0QZY0148 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01697152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0QZY0MF_01697143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01697151 .
?targetMotifMatchRegionMatchBeginMF_01697151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01697144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01697152 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697141, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697141) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697141, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionA0QZY0142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697143, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697143) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697143, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697143) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01697144) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697141, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697141) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697141, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionA0QZY0142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697143, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697143) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697143, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697143) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01697144) - 1) AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER (REGEX('ITPYD[AS][AT]H[ILM]GH', SUBSTR(?thisSequenceValue, ?thisPositionOn34, (?thisPositionOn35 - ?thisPositionOn34)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionA0QZY0163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0QZY0165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0QZY0MF_01697158 .
?templateMotifSequenceMatchRegionA0QZY0163 faldo:begin ?templateMotifSequenceMatchBeginA0QZY0164 .
?templateMotifSequenceMatchBeginA0QZY0164 faldo:position ?templateMotifSequenceMatchBeginPositionA0QZY0159 ;
faldo:reference isoform:A0QZY0-1 .
?templateMotifSequenceProfileAlignmentOperationA0QZY0165 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01697169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0QZY0MF_01697160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01697168 .
?targetMotifMatchRegionMatchBeginMF_01697168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01697161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01697169 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697158, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697158) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697158, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionA0QZY0159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697160, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697160) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697160, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697160) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_01697161) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697158, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697158) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697158, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionA0QZY0159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697160, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697160) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697160, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697160) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_01697161) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER (REGEX('[EDQ][HR]GGDP', SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionA0QZY0180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0QZY0182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0QZY0MF_01697175 .
?templateMotifSequenceMatchRegionA0QZY0180 faldo:begin ?templateMotifSequenceMatchBeginA0QZY0181 .
?templateMotifSequenceMatchBeginA0QZY0181 faldo:position ?templateMotifSequenceMatchBeginPositionA0QZY0176 ;
faldo:reference isoform:A0QZY0-1 .
?templateMotifSequenceProfileAlignmentOperationA0QZY0182 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01697186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0QZY0MF_01697177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01697185 .
?targetMotifMatchRegionMatchBeginMF_01697185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01697178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01697186 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697175, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697175) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697175, CONCAT('^(?:-*[^-]){', STR(((289 - ?templateMotifSequenceMatchBeginPositionA0QZY0176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697177, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697177) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697177, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697177) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_01697178) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697175, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697175) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697175, CONCAT('^(?:-*[^-]){', STR(((293 - ?templateMotifSequenceMatchBeginPositionA0QZY0176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697177, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697177) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697177, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697177) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_01697178) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)) = 'KMSKS')) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionA0QZY0197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0QZY0199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0QZY0MF_01697192 .
?templateMotifSequenceMatchRegionA0QZY0197 faldo:begin ?templateMotifSequenceMatchBeginA0QZY0198 .
?templateMotifSequenceMatchBeginA0QZY0198 faldo:position ?templateMotifSequenceMatchBeginPositionA0QZY0193 ;
faldo:reference isoform:A0QZY0-1 .
?templateMotifSequenceProfileAlignmentOperationA0QZY0199 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01697203 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0QZY0MF_01697194 .
?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01697202 .
?targetMotifMatchRegionMatchBeginMF_01697202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01697195 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01697203 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697192, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697192) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697192, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionA0QZY0193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697194, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697194) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697194, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697194) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_01697195) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t206) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionA0QZY0212 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0QZY0214 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0QZY0MF_01697207 .
?templateMotifSequenceMatchRegionA0QZY0212 faldo:begin ?templateMotifSequenceMatchBeginA0QZY0213 .
?templateMotifSequenceMatchBeginA0QZY0213 faldo:position ?templateMotifSequenceMatchBeginPositionA0QZY0208 ;
faldo:reference isoform:A0QZY0-1 .
?templateMotifSequenceProfileAlignmentOperationA0QZY0214 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01697218 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0QZY0MF_01697209 .
?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01697217 .
?targetMotifMatchRegionMatchBeginMF_01697217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01697210 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01697218 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697207, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697207) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697207, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionA0QZY0208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697209, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697209) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697209, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697209) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_01697210) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionA0QZY0227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0QZY0229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0QZY0MF_01697222 .
?templateMotifSequenceMatchRegionA0QZY0227 faldo:begin ?templateMotifSequenceMatchBeginA0QZY0228 .
?templateMotifSequenceMatchBeginA0QZY0228 faldo:position ?templateMotifSequenceMatchBeginPositionA0QZY0223 ;
faldo:reference isoform:A0QZY0-1 .
?templateMotifSequenceProfileAlignmentOperationA0QZY0229 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01697233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0QZY0MF_01697224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01697232 .
?targetMotifMatchRegionMatchBeginMF_01697232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01697225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01697233 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697222, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697222) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697222, CONCAT('^(?:-*[^-]){', STR(((256 - ?templateMotifSequenceMatchBeginPositionA0QZY0223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697224, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697224) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697224, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697224) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_01697225) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionA0QZY0242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0QZY0244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0QZY0MF_01697237 .
?templateMotifSequenceMatchRegionA0QZY0242 faldo:begin ?templateMotifSequenceMatchBeginA0QZY0243 .
?templateMotifSequenceMatchBeginA0QZY0243 faldo:position ?templateMotifSequenceMatchBeginPositionA0QZY0238 ;
faldo:reference isoform:A0QZY0-1 .
?templateMotifSequenceProfileAlignmentOperationA0QZY0244 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01697248 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0QZY0MF_01697239 .
?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01697247 .
?targetMotifMatchRegionMatchBeginMF_01697247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01697240 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01697248 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697237, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697237) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697237, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionA0QZY0238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697239, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697239) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697239, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697239) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_01697240) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionA0QZY0257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0QZY0259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0QZY0MF_01697252 .
?templateMotifSequenceMatchRegionA0QZY0257 faldo:begin ?templateMotifSequenceMatchBeginA0QZY0258 .
?templateMotifSequenceMatchBeginA0QZY0258 faldo:position ?templateMotifSequenceMatchBeginPositionA0QZY0253 ;
faldo:reference isoform:A0QZY0-1 .
?templateMotifSequenceProfileAlignmentOperationA0QZY0259 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01697263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0QZY0MF_01697254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01697262 .
?targetMotifMatchRegionMatchBeginMF_01697262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01697255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01697263 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697252, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697252) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697252, CONCAT('^(?:-*[^-]){', STR(((227 - ?templateMotifSequenceMatchBeginPositionA0QZY0253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697254, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697254) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697254, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697254) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_01697255) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs1t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionA0QZY0272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0QZY0274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0QZY0MF_01697267 .
?templateMotifSequenceMatchRegionA0QZY0272 faldo:begin ?templateMotifSequenceMatchBeginA0QZY0273 .
?templateMotifSequenceMatchBeginA0QZY0273 faldo:position ?templateMotifSequenceMatchBeginPositionA0QZY0268 ;
faldo:reference isoform:A0QZY0-1 .
?templateMotifSequenceProfileAlignmentOperationA0QZY0274 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01697278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0QZY0MF_01697269 .
?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01697277 .
?targetMotifMatchRegionMatchBeginMF_01697277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01697270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01697278 edam:has_input signature:MF_01697 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0QZY0MF_01697267, 1, (STRLEN(?templateMotifCigarA0QZY0MF_01697267) - STRLEN(REPLACE(?templateMotifCigarA0QZY0MF_01697267, CONCAT('^(?:-*[^-]){', STR(((283 - ?templateMotifSequenceMatchBeginPositionA0QZY0268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697269, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697269) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0QZY0MF_01697269, 1, (STRLEN(?targetMotifMatchCigarA0QZY0MF_01697269) - STRLEN(REPLACE(?targetMotifMatchCigarA0QZY0MF_01697269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_01697270) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs1t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) .
FILTER (REGEX('[LIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01697a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
}
"xsd:string |
