| http://purl.uniprot.org/unirules/MF_01873#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:655414 up:source unirule:MF_01873 .
_:655415 up:source unirule:MF_01873 .
_:655416 up:source unirule:MF_01873 .
_:655417 up:source unirule:MF_01873 .
_:655418 up:source unirule:MF_01873 .
_:655419 up:source unirule:MF_01873 .
_:655420 up:source unirule:MF_01873 .
_:655421 up:source unirule:MF_01873 .
_:655422 up:source unirule:MF_01873 .
_:655423 up:source unirule:MF_01873 .
_:655424 up:source unirule:MF_01873 .
_:655425 up:source unirule:MF_01873 .
_:655426 up:source unirule:MF_01873 .
_:655427 up:source unirule:MF_01873 .
_:655428 up:source unirule:MF_01873 .
_:655429 up:source unirule:MF_01873 .
_:655430 up:source unirule:MF_01873 .
_:655431 up:source unirule:MF_01873 .
_:655432 up:source unirule:MF_01873 .
_:655433 up:source unirule:MF_01873 .
_:655434 up:source unirule:MF_01873 .
_:655435 up:source unirule:MF_01873 .
_:655436 up:source unirule:MF_01873 .
_:655437 up:source unirule:MF_01873 .
_:655438 up:source unirule:MF_01873 .
_:655439 up:source unirule:MF_01873 .
_:655440 up:source unirule:MF_01873 .
_:655441 up:source unirule:MF_01873 .
_:655442 up:source unirule:MF_01873 .
_:655443 up:source unirule:MF_01873 .
_:655444 up:source unirule:MF_01873 .
_:655445 up:source unirule:MF_01873 .
_:655446 up:source unirule:MF_01873 .
_:655447 up:source unirule:MF_01873 .
_:655448 up:source unirule:MF_01873 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0005737 ,
GO:0016433 ,
GO:0019843 ,
GO:0070475 ,
keyword:1015 ,
keyword:46 ,
keyword:489 ,
keyword:698 ,
keyword:808 ,
keyword:949 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.224' ;
up:fullName 'Ribosomal RNA large subunit methyltransferase Cfr' ;
rdf:type up:Structured_Name .
?name1 up:fullName '23S rRNA (adenine(2503)-C(8))-methyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName '23S rRNA m8A2503 methyltransferase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'cfr' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Specifically methylates position 8 of adenine 2503 in 23S rRNA. Confers resistance to some classes of antibiotics.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Annotation ;
rdfs:comment 'Reaction proceeds by a ping-pong mechanism involving intermediate methylation of a conserved cysteine residue.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the radical SAM superfamily. RlmN family. Cfr subfamily.' .
?case11 up:classifiedWith GO:0051539 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 .
?pfs12 up:annotation ?annotation13 ,
?annotation19 ,
?annotation25 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:49883 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:49883 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:49883 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:59789 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:59789 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'S-methylcysteine intermediate' .
?pfsb53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:59789 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:59789 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment '(transient)' .
?pfsb73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
_:655449 a rdf:Statement ;
up:attribution _:655414 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:655450 a rdf:Statement ;
up:attribution _:655415 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:655451 a rdf:Statement ;
up:attribution _:655416 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:655452 a rdf:Statement ;
up:attribution _:655417 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:655453 a rdf:Statement ;
up:attribution _:655418 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:655454 a rdf:Statement ;
up:attribution _:655419 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:655455 a rdf:Statement ;
up:attribution _:655420 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:655456 a rdf:Statement ;
up:attribution _:655421 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:655457 a rdf:Statement ;
up:attribution _:655422 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:655458 a rdf:Statement ;
up:attribution _:655423 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:46 .
_:655459 a rdf:Statement ;
up:attribution _:655424 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:655460 a rdf:Statement ;
up:attribution _:655425 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:655461 a rdf:Statement ;
up:attribution _:655426 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:655462 a rdf:Statement ;
up:attribution _:655427 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:655463 a rdf:Statement ;
up:attribution _:655428 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:655464 a rdf:Statement ;
up:attribution _:655429 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:655465 a rdf:Statement ;
up:attribution _:655430 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019843 .
_:655466 a rdf:Statement ;
up:attribution _:655431 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016433 .
_:655467 a rdf:Statement ;
up:attribution _:655432 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070475 .
_:655468 a rdf:Statement ;
up:attribution _:655433 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:655469 a rdf:Statement ;
up:attribution _:655434 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:655470 a rdf:Statement ;
up:attribution _:655435 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:655471 a rdf:Statement ;
up:attribution _:655436 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:655472 a rdf:Statement ;
up:attribution _:655437 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:655473 a rdf:Statement ;
up:attribution _:655438 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051539 .
_:655474 a rdf:Statement ;
up:source unirule:MF_01873 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:655475 a rdf:Statement ;
up:attribution _:655439 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:655476 a rdf:Statement ;
up:source unirule:MF_01873 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:655477 a rdf:Statement ;
up:attribution _:655440 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:655478 a rdf:Statement ;
up:source unirule:MF_01873 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:655479 a rdf:Statement ;
up:attribution _:655441 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:655480 a rdf:Statement ;
up:source unirule:MF_01873 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:655481 a rdf:Statement ;
up:attribution _:655442 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:655482 a rdf:Statement ;
up:source unirule:MF_01873 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:655483 a rdf:Statement ;
up:attribution _:655443 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:655484 a rdf:Statement ;
up:source unirule:MF_01873 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:655485 a rdf:Statement ;
up:attribution _:655444 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:655486 a rdf:Statement ;
up:source unirule:MF_01873 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:655487 a rdf:Statement ;
up:attribution _:655445 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:655488 a rdf:Statement ;
up:source unirule:MF_01873 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:655489 a rdf:Statement ;
up:attribution _:655446 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:655490 a rdf:Statement ;
up:source unirule:MF_01873 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:655491 a rdf:Statement ;
up:attribution _:655447 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:655492 a rdf:Statement ;
up:source unirule:MF_01873 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:655493 a rdf:Statement ;
up:attribution _:655448 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01873
#Rule MF_01873 Created by:? on:2009-10-15 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01873 .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(URI(CONCAT(STR(?this), '#MF_01873a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionQ9FBG482 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG484 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9FBG4MF_0187377 .
?templateMotifSequenceMatchRegionQ9FBG482 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG483 .
?templateMotifSequenceMatchBeginQ9FBG483 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG478 ;
faldo:reference isoform:Q9FBG4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9FBG484 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0187388 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9FBG4MF_0187379 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0187387 .
?targetMotifMatchRegionMatchBeginMF_0187387 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0187380 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0187388 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_0187377, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_0187377) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_0187377, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionQ9FBG478) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_0187379, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_0187379) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_0187379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_0187379, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_0187379) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_0187379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0187380) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_0187377, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_0187377) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_0187377, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionQ9FBG478) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_0187379, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_0187379) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_0187379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_0187379, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_0187379) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_0187379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0187380) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_0187377, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_0187377) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_0187377, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionQ9FBG478) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_0187379, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_0187379) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_0187379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_0187379, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_0187379) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_0187379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0187380) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9FBG4MF_0187398 .
?templateMotifSequenceMatchRegionQ9FBG4103 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4104 .
?templateMotifSequenceMatchBeginQ9FBG4104 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG499 ;
faldo:reference isoform:Q9FBG4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9FBG4105 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873108 .
?targetMotifMatchRegionMatchBeginMF_01873108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01873109 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_0187398, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_0187398) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_0187398, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionQ9FBG499) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873100, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873100, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01873101) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_0187398, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_0187398) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_0187398, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionQ9FBG499) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873100, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873100, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01873101) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)) = 'GE')) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9FBG4MF_01873115 .
?templateMotifSequenceMatchRegionQ9FBG4120 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4121 .
?templateMotifSequenceMatchBeginQ9FBG4121 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG4116 ;
faldo:reference isoform:Q9FBG4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9FBG4122 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873125 .
?targetMotifMatchRegionMatchBeginMF_01873125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01873126 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873115, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873115) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873115, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionQ9FBG4116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873117, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873117, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01873118) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873115, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873115) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873115, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ9FBG4116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873117, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873117, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01873118) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs2t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]H', SUBSTR(?thisSequenceValue, ?thisPositionOn43, (?thisPositionOn44 - ?thisPositionOn43)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9FBG4MF_01873132 .
?templateMotifSequenceMatchRegionQ9FBG4137 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4138 .
?templateMotifSequenceMatchBeginQ9FBG4138 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG4133 ;
faldo:reference isoform:Q9FBG4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9FBG4139 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873142 .
?targetMotifMatchRegionMatchBeginMF_01873142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01873143 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873132, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873132) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873132, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionQ9FBG4133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873134, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873134) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873134, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873134) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01873135) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs2t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4152 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4154 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9FBG4MF_01873147 .
?templateMotifSequenceMatchRegionQ9FBG4152 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4153 .
?templateMotifSequenceMatchBeginQ9FBG4153 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG4148 ;
faldo:reference isoform:Q9FBG4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9FBG4154 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873158 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873149 .
?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873157 .
?targetMotifMatchRegionMatchBeginMF_01873157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873150 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01873158 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873147, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873147) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873147, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionQ9FBG4148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873149, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873149) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873149, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873149) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_01873150) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9FBG4MF_01873162 .
?templateMotifSequenceMatchRegionQ9FBG4167 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4168 .
?templateMotifSequenceMatchBeginQ9FBG4168 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG4163 ;
faldo:reference isoform:Q9FBG4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9FBG4169 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873173 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873164 .
?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873172 .
?targetMotifMatchRegionMatchBeginMF_01873172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873165 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01873173 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873162, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873162) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873162, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionQ9FBG4163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873164, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873164) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873164, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873164) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) .
BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_01873165) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs2t176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4182 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4184 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9FBG4MF_01873177 .
?templateMotifSequenceMatchRegionQ9FBG4182 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4183 .
?templateMotifSequenceMatchBeginQ9FBG4183 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG4178 ;
faldo:reference isoform:Q9FBG4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9FBG4184 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873188 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873179 .
?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873187 .
?targetMotifMatchRegionMatchBeginMF_01873187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873180 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01873188 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873177, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873177) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873177, CONCAT('^(?:-*[^-]){', STR(((293 - ?templateMotifSequenceMatchBeginPositionQ9FBG4178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873179, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873179) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873179, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873179) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_01873180) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs2t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9FBG4MF_01873192 .
?templateMotifSequenceMatchRegionQ9FBG4197 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4198 .
?templateMotifSequenceMatchBeginQ9FBG4198 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG4193 ;
faldo:reference isoform:Q9FBG4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9FBG4199 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873203 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873194 .
?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873202 .
?targetMotifMatchRegionMatchBeginMF_01873202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873195 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01873203 edam:has_input signature:MF_01873 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873192, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873192) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873192, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionQ9FBG4193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873194, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873194) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873194, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873194) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_01873195) - 1) AS ?thisPositionOn75) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873192, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873192) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873192, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionQ9FBG4193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873194, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873194) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873194, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873194) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_01873195) - 1) AS ?thisPositionOn76) .
BIND(?this AS ?pfs2t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse74) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn75, (?thisPositionOn76 - ?thisPositionOn75)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01873a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag209) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag209, ?UNBOUND_VARIABLE) AS ?case11) .
}
"xsd:string |
