| http://purl.uniprot.org/unirules/MF_01881#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:658374 up:source unirule:MF_01881 .
_:658375 up:source unirule:MF_01881 .
_:658376 up:source unirule:MF_01881 .
_:658377 up:source unirule:MF_01881 .
_:658378 up:source unirule:MF_01881 .
_:658379 up:source unirule:MF_01881 .
_:658380 up:source unirule:MF_01881 .
_:658381 up:source unirule:MF_01881 .
_:658382 up:source unirule:MF_01881 .
_:658383 up:source unirule:MF_01881 .
_:658384 up:source unirule:MF_01881 .
_:658385 up:source unirule:MF_01881 .
_:658386 up:source unirule:MF_01881 .
_:658387 up:source unirule:MF_01881 .
_:658388 up:source unirule:MF_01881 .
_:658389 up:source unirule:MF_01881 .
_:658390 up:source unirule:MF_01881 .
_:658391 up:source unirule:MF_01881 .
_:658392 up:source unirule:MF_01881 .
_:658393 up:source unirule:MF_01881 .
_:658394 up:source unirule:MF_01881 .
_:658395 up:source unirule:MF_01881 .
_:658396 up:source unirule:MF_01881 .
_:658397 up:source unirule:MF_01881 .
_:658398 up:source unirule:MF_01881 .
_:658399 up:source unirule:MF_01881 .
_:658400 up:source unirule:MF_01881 .
_:658401 up:source unirule:MF_01881 .
_:658402 up:source unirule:MF_01881 .
_:658403 up:source unirule:MF_01881 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0008980 ,
GO:0016310 ,
GO:0070689 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.2.15' ;
up:fullName 'Propionate kinase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'tdcD' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of propionyl phosphate and ADP to propionate and ATP.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation; L-threonine degradation via propanoate pathway; propanoate from L-threonine: step 4/4.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the acetokinase family. TdcD subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:30616 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:30616 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:30616 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:18420 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:18420 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:30616 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:30616 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf ?molecule69 .
?molecule69 rdfs:label 'substrate' .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:30616 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:30616 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb88 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb94 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
_:658404 a rdf:Statement ;
up:attribution _:658374 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:658405 a rdf:Statement ;
up:attribution _:658375 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:658406 a rdf:Statement ;
up:attribution _:658376 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:658407 a rdf:Statement ;
up:attribution _:658377 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:658408 a rdf:Statement ;
up:attribution _:658378 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:658409 a rdf:Statement ;
up:attribution _:658379 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:658410 a rdf:Statement ;
up:attribution _:658380 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:658411 a rdf:Statement ;
up:attribution _:658381 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:658412 a rdf:Statement ;
up:attribution _:658382 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:658413 a rdf:Statement ;
up:attribution _:658383 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:658414 a rdf:Statement ;
up:attribution _:658384 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:658415 a rdf:Statement ;
up:attribution _:658385 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:658416 a rdf:Statement ;
up:attribution _:658386 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:658417 a rdf:Statement ;
up:attribution _:658387 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:658418 a rdf:Statement ;
up:attribution _:658388 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008980 .
_:658419 a rdf:Statement ;
up:attribution _:658389 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070689 .
_:658420 a rdf:Statement ;
up:attribution _:658390 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016310 .
_:658421 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:658422 a rdf:Statement ;
up:attribution _:658391 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:658423 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:658424 a rdf:Statement ;
up:attribution _:658392 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:658425 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:658426 a rdf:Statement ;
up:attribution _:658393 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:658427 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:658428 a rdf:Statement ;
up:attribution _:658394 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:658429 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:658430 a rdf:Statement ;
up:attribution _:658395 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:658431 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:658432 a rdf:Statement ;
up:attribution _:658396 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:658433 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:658434 a rdf:Statement ;
up:attribution _:658397 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:658435 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:658436 a rdf:Statement ;
up:attribution _:658398 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:658437 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:658438 a rdf:Statement ;
up:attribution _:658399 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:658439 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:658440 a rdf:Statement ;
up:attribution _:658400 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:658441 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:658442 a rdf:Statement ;
up:attribution _:658401 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:658443 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:658444 a rdf:Statement ;
up:attribution _:658402 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:658445 a rdf:Statement ;
up:source unirule:MF_01881 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:658446 a rdf:Statement ;
up:attribution _:658403 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01881
#Rule MF_01881 Created by:? on:2010-07-23 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01881 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01881a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionO06961103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_0188198 .
?templateMotifSequenceMatchRegionO06961103 faldo:begin ?templateMotifSequenceMatchBeginO06961104 .
?templateMotifSequenceMatchBeginO06961104 faldo:position ?templateMotifSequenceMatchBeginPositionO0696199 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961105 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881108 .
?targetMotifMatchRegionMatchBeginMF_01881108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881109 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_0188198, 1, (STRLEN(?templateMotifCigarO06961MF_0188198) - STRLEN(REPLACE(?templateMotifCigarO06961MF_0188198, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionO0696199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881100, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881100) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881100, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881100) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01881101) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_0188198, 1, (STRLEN(?templateMotifCigarO06961MF_0188198) - STRLEN(REPLACE(?templateMotifCigarO06961MF_0188198, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionO0696199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881100, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881100) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881100, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881100) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01881101) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'HLGNG')) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionO06961120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_01881115 .
?templateMotifSequenceMatchRegionO06961120 faldo:begin ?templateMotifSequenceMatchBeginO06961121 .
?templateMotifSequenceMatchBeginO06961121 faldo:position ?templateMotifSequenceMatchBeginPositionO06961116 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961122 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881125 .
?targetMotifMatchRegionMatchBeginMF_01881125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881126 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881115, 1, (STRLEN(?templateMotifCigarO06961MF_01881115) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881115, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionO06961116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881117, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881117) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881117, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881117) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01881118) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881115, 1, (STRLEN(?templateMotifCigarO06961MF_01881115) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881115, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionO06961116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881117, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881117) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881117, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881117) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01881118) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('D[LM]R', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionO06961137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_01881132 .
?templateMotifSequenceMatchRegionO06961137 faldo:begin ?templateMotifSequenceMatchBeginO06961138 .
?templateMotifSequenceMatchBeginO06961138 faldo:position ?templateMotifSequenceMatchBeginPositionO06961133 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961139 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881142 .
?targetMotifMatchRegionMatchBeginMF_01881142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881143 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881132, 1, (STRLEN(?templateMotifCigarO06961MF_01881132) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881132, CONCAT('^(?:-*[^-]){', STR(((326 - ?templateMotifSequenceMatchBeginPositionO06961133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881134, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881134) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881134, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881134) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01881135) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881132, 1, (STRLEN(?templateMotifCigarO06961MF_01881132) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881132, CONCAT('^(?:-*[^-]){', STR(((330 - ?templateMotifSequenceMatchBeginPositionO06961133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881134, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881134) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881134, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881134) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01881135) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)) = 'GIGEN')) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionO06961154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_01881149 .
?templateMotifSequenceMatchRegionO06961154 faldo:begin ?templateMotifSequenceMatchBeginO06961155 .
?templateMotifSequenceMatchBeginO06961155 faldo:position ?templateMotifSequenceMatchBeginPositionO06961150 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961156 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881159 .
?targetMotifMatchRegionMatchBeginMF_01881159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881160 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881149, 1, (STRLEN(?templateMotifCigarO06961MF_01881149) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881149, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionO06961150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881151, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881151) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881151, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881151) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01881152) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionO06961169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_01881164 .
?templateMotifSequenceMatchRegionO06961169 faldo:begin ?templateMotifSequenceMatchBeginO06961170 .
?templateMotifSequenceMatchBeginO06961170 faldo:position ?templateMotifSequenceMatchBeginPositionO06961165 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961171 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881174 .
?targetMotifMatchRegionMatchBeginMF_01881174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881175 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881164, 1, (STRLEN(?templateMotifCigarO06961MF_01881164) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881164, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionO06961165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881166, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881166) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881166, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881166) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_01881167) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionO06961184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_01881179 .
?templateMotifSequenceMatchRegionO06961184 faldo:begin ?templateMotifSequenceMatchBeginO06961185 .
?templateMotifSequenceMatchBeginO06961185 faldo:position ?templateMotifSequenceMatchBeginPositionO06961180 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961186 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881181 .
?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881189 .
?targetMotifMatchRegionMatchBeginMF_01881189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881190 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881179, 1, (STRLEN(?templateMotifCigarO06961MF_01881179) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881179, CONCAT('^(?:-*[^-]){', STR(((381 - ?templateMotifSequenceMatchBeginPositionO06961180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881181, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881181) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881181, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881181) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) .
BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_01881182) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t193) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch198 faldo:location ?templateMotifSequenceMatchRegionO06961199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961201 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_01881194 .
?templateMotifSequenceMatchRegionO06961199 faldo:begin ?templateMotifSequenceMatchBeginO06961200 .
?templateMotifSequenceMatchBeginO06961200 faldo:position ?templateMotifSequenceMatchBeginPositionO06961195 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961201 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch202 faldo:location ?targetMotifMatchRegionMatch203 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881205 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881196 .
?targetMotifMatchRegionMatch203 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881204 .
?targetMotifMatchRegionMatchBeginMF_01881204 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881197 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881205 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881194, 1, (STRLEN(?templateMotifCigarO06961MF_01881194) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881194, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionO06961195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881196, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881196) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881196, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881196) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_01881197) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch213 faldo:location ?templateMotifSequenceMatchRegionO06961214 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961216 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_01881209 .
?templateMotifSequenceMatchRegionO06961214 faldo:begin ?templateMotifSequenceMatchBeginO06961215 .
?templateMotifSequenceMatchBeginO06961215 faldo:position ?templateMotifSequenceMatchBeginPositionO06961210 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961216 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch217 faldo:location ?targetMotifMatchRegionMatch218 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881220 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881211 .
?targetMotifMatchRegionMatch218 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881219 .
?targetMotifMatchRegionMatchBeginMF_01881219 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881212 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881220 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881209, 1, (STRLEN(?templateMotifCigarO06961MF_01881209) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881209, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionO06961210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881211, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881211) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881211, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881211) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) .
BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_01881212) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t223) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch228 faldo:location ?templateMotifSequenceMatchRegionO06961229 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961231 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_01881224 .
?templateMotifSequenceMatchRegionO06961229 faldo:begin ?templateMotifSequenceMatchBeginO06961230 .
?templateMotifSequenceMatchBeginO06961230 faldo:position ?templateMotifSequenceMatchBeginPositionO06961225 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961231 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch232 faldo:location ?targetMotifMatchRegionMatch233 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881235 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881226 .
?targetMotifMatchRegionMatch233 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881234 .
?targetMotifMatchRegionMatchBeginMF_01881234 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881227 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881235 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881224, 1, (STRLEN(?templateMotifCigarO06961MF_01881224) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881224, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionO06961225) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881226, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881226) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881226, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881226) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_01881227) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionO06961244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_01881239 .
?templateMotifSequenceMatchRegionO06961244 faldo:begin ?templateMotifSequenceMatchBeginO06961245 .
?templateMotifSequenceMatchBeginO06961245 faldo:position ?templateMotifSequenceMatchBeginPositionO06961240 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961246 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881249 .
?targetMotifMatchRegionMatchBeginMF_01881249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881250 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881239, 1, (STRLEN(?templateMotifCigarO06961MF_01881239) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881239, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionO06961240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881241, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881241) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881241, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881241) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_01881242) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t253) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch258 faldo:location ?templateMotifSequenceMatchRegionO06961259 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961261 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_01881254 .
?templateMotifSequenceMatchRegionO06961259 faldo:begin ?templateMotifSequenceMatchBeginO06961260 .
?templateMotifSequenceMatchBeginO06961260 faldo:position ?templateMotifSequenceMatchBeginPositionO06961255 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961261 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch262 faldo:location ?targetMotifMatchRegionMatch263 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881265 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881256 .
?targetMotifMatchRegionMatch263 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881264 .
?targetMotifMatchRegionMatchBeginMF_01881264 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881257 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881265 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881254, 1, (STRLEN(?templateMotifCigarO06961MF_01881254) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881254, CONCAT('^(?:-*[^-]){', STR(((326 - ?templateMotifSequenceMatchBeginPositionO06961255) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1266) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881256, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881256) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881256, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881256) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), '')))), '[^-]', ''))) AS ?step2267) .
BIND(((?step2267 + ?targetMotifMatchRegionMatchBeginPositionMF_01881257) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t268) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch273 faldo:location ?templateMotifSequenceMatchRegionO06961274 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961276 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_01881269 .
?templateMotifSequenceMatchRegionO06961274 faldo:begin ?templateMotifSequenceMatchBeginO06961275 .
?templateMotifSequenceMatchBeginO06961275 faldo:position ?templateMotifSequenceMatchBeginPositionO06961270 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961276 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch277 faldo:location ?targetMotifMatchRegionMatch278 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881280 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881271 .
?targetMotifMatchRegionMatch278 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881279 .
?targetMotifMatchRegionMatchBeginMF_01881279 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881272 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881280 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881269, 1, (STRLEN(?templateMotifCigarO06961MF_01881269) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881269, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionO06961270) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1281) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881271, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881271) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881271, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1281), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881271, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881271) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881271, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1281), '}'), '')))), '[^-]', ''))) AS ?step2282) .
BIND(((?step2282 + ?targetMotifMatchRegionMatchBeginPositionMF_01881272) - 1) AS ?thisPositionOn90) .
BIND(?thisPositionOn90 AS ?thisPositionOn91) .
BIND(?this AS ?pfs1t283) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch288 faldo:location ?templateMotifSequenceMatchRegionO06961289 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06961291 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06961MF_01881284 .
?templateMotifSequenceMatchRegionO06961289 faldo:begin ?templateMotifSequenceMatchBeginO06961290 .
?templateMotifSequenceMatchBeginO06961290 faldo:position ?templateMotifSequenceMatchBeginPositionO06961285 ;
faldo:reference isoform:O06961-1 .
?templateMotifSequenceProfileAlignmentOperationO06961291 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
?targetMotifMatch292 faldo:location ?targetMotifMatchRegionMatch293 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01881295 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06961MF_01881286 .
?targetMotifMatchRegionMatch293 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01881294 .
?targetMotifMatchRegionMatchBeginMF_01881294 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01881287 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01881295 edam:has_input signature:MF_01881 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06961MF_01881284, 1, (STRLEN(?templateMotifCigarO06961MF_01881284) - STRLEN(REPLACE(?templateMotifCigarO06961MF_01881284, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionO06961285) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1296) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06961MF_01881286, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881286) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1296), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06961MF_01881286, 1, (STRLEN(?targetMotifMatchCigarO06961MF_01881286) - STRLEN(REPLACE(?targetMotifMatchCigarO06961MF_01881286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1296), '}'), '')))), '[^-]', ''))) AS ?step2297) .
BIND(((?step2297 + ?targetMotifMatchRegionMatchBeginPositionMF_01881287) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs1t298) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse95) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01881a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
}
"xsd:string |
