| http://purl.uniprot.org/unirules/MF_01923#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:672509 up:source unirule:MF_01923 .
_:672510 up:source unirule:MF_01923 .
_:672511 up:source unirule:MF_01923 .
_:672512 up:source unirule:MF_01923 .
_:672513 up:source unirule:MF_01923 .
_:672514 up:source unirule:MF_01923 .
_:672515 up:source unirule:MF_01923 .
_:672516 up:source unirule:MF_01923 .
_:672517 up:source unirule:MF_01923 .
_:672518 up:source unirule:MF_01923 .
_:672519 up:source unirule:MF_01923 .
_:672520 up:source unirule:MF_01923 .
_:672521 up:source unirule:MF_01923 .
_:672522 up:source unirule:MF_01923 .
_:672523 up:source unirule:MF_01923 .
_:672524 up:source unirule:MF_01923 .
_:672525 up:source unirule:MF_01923 .
_:672526 up:source unirule:MF_01923 .
_:672527 up:source unirule:MF_01923 .
_:672528 up:source unirule:MF_01923 .
_:672529 up:source unirule:MF_01923 .
_:672530 up:source unirule:MF_01923 .
_:672531 up:source unirule:MF_01923 .
_:672532 up:source unirule:MF_01923 .
_:672533 up:source unirule:MF_01923 .
_:672534 up:source unirule:MF_01923 .
_:672535 up:source unirule:MF_01923 .
_:672536 up:source unirule:MF_01923 .
_:672537 up:source unirule:MF_01923 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0019553 ,
GO:0050097 ,
keyword:170 ,
keyword:413 ,
keyword:846 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.4.99.1' ;
up:fullName 'Glutamate mutase epsilon subunit' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Glutamate mutase E chain' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Glutamate mutase large subunit' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Methylaspartate mutase' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'glmE' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:18408 ;
rdf:type up:Cofactor_Annotation .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation; L-glutamate degradation via mesaconate pathway; acetate and pyruvate from L-glutamate: step 1/4.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer composed of 2 epsilon subunits (GlmE) and 2 sigma subunits (GlmS). GlmE exists as a homodimer and GlmS as a monomer.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the methylaspartate mutase GlmE subunit family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:29985 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:29985 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:18408 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:29985 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:18408 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:29985 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:29985 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:18408 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:29985 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:18408 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:18408 .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf chebi:18408 .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
up:ligand ?ligand100 ;
rdf:type up:Binding_Site_Annotation .
?pfsb98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf chebi:18408 .
_:672538 a rdf:Statement ;
up:attribution _:672509 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:672539 a rdf:Statement ;
up:attribution _:672510 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:672540 a rdf:Statement ;
up:attribution _:672511 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:672541 a rdf:Statement ;
up:attribution _:672512 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:672542 a rdf:Statement ;
up:attribution _:672513 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:672543 a rdf:Statement ;
up:attribution _:672514 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:672544 a rdf:Statement ;
up:attribution _:672515 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:672545 a rdf:Statement ;
up:attribution _:672516 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:672546 a rdf:Statement ;
up:attribution _:672517 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:672547 a rdf:Statement ;
up:attribution _:672518 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:672548 a rdf:Statement ;
up:attribution _:672519 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:672549 a rdf:Statement ;
up:attribution _:672520 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:846 .
_:672550 a rdf:Statement ;
up:attribution _:672521 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:170 .
_:672551 a rdf:Statement ;
up:attribution _:672522 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:672552 a rdf:Statement ;
up:attribution _:672523 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050097 .
_:672553 a rdf:Statement ;
up:attribution _:672524 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019553 .
_:672554 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:672555 a rdf:Statement ;
up:attribution _:672525 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:672556 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:672557 a rdf:Statement ;
up:attribution _:672526 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:672558 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:672559 a rdf:Statement ;
up:attribution _:672527 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:672560 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:672561 a rdf:Statement ;
up:attribution _:672528 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:672562 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:672563 a rdf:Statement ;
up:attribution _:672529 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:672564 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:672565 a rdf:Statement ;
up:attribution _:672530 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:672566 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:672567 a rdf:Statement ;
up:attribution _:672531 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:672568 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:672569 a rdf:Statement ;
up:attribution _:672532 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:672570 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:672571 a rdf:Statement ;
up:attribution _:672533 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:672572 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:672573 a rdf:Statement ;
up:attribution _:672534 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:672574 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:672575 a rdf:Statement ;
up:attribution _:672535 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:672576 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:672577 a rdf:Statement ;
up:attribution _:672536 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:672578 a rdf:Statement ;
up:source unirule:MF_01923 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:672579 a rdf:Statement ;
up:attribution _:672537 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01923
#Rule MF_01923 Created by:? on:2014-05-23 Modified by:Catherine Rivoire on:2025-09-18
VALUES ?supertaxon103 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01923 .
?thisOrganism rdfs:subClassOf+ ?supertaxon103 .
BIND(URI(CONCAT(STR(?this), '#MF_01923a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionP80077109 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077111 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923104 .
?templateMotifSequenceMatchRegionP80077109 faldo:begin ?templateMotifSequenceMatchBeginP80077110 .
?templateMotifSequenceMatchBeginP80077110 faldo:position ?templateMotifSequenceMatchBeginPositionP80077105 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077111 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923115 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923106 .
?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923114 .
?targetMotifMatchRegionMatchBeginMF_01923114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923107 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923115 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923104, 1, (STRLEN(?templateMotifCigarP80077MF_01923104) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923104, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionP80077105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923106, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923106) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923106, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923106) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01923107) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923104, 1, (STRLEN(?templateMotifCigarP80077MF_01923104) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923104, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP80077105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923106, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923106) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923106, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923106) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_01923107) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER (REGEX('[RK]H', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionP80077126 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077128 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923121 .
?templateMotifSequenceMatchRegionP80077126 faldo:begin ?templateMotifSequenceMatchBeginP80077127 .
?templateMotifSequenceMatchBeginP80077127 faldo:position ?templateMotifSequenceMatchBeginPositionP80077122 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077128 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923132 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923123 .
?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923131 .
?targetMotifMatchRegionMatchBeginMF_01923131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923124 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923132 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923121, 1, (STRLEN(?templateMotifCigarP80077MF_01923121) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923121, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP80077122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923123, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923123) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923123, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923123) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_01923124) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionP80077141 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077143 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923136 .
?templateMotifSequenceMatchRegionP80077141 faldo:begin ?templateMotifSequenceMatchBeginP80077142 .
?templateMotifSequenceMatchBeginP80077142 faldo:position ?templateMotifSequenceMatchBeginPositionP80077137 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077143 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923147 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923138 .
?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923146 .
?targetMotifMatchRegionMatchBeginMF_01923146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923139 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923147 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923136, 1, (STRLEN(?templateMotifCigarP80077MF_01923136) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923136, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP80077137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923138, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923138) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923138, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923138) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) .
BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_01923139) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t150) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch155 faldo:location ?templateMotifSequenceMatchRegionP80077156 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077158 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923151 .
?templateMotifSequenceMatchRegionP80077156 faldo:begin ?templateMotifSequenceMatchBeginP80077157 .
?templateMotifSequenceMatchBeginP80077157 faldo:position ?templateMotifSequenceMatchBeginPositionP80077152 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077158 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch159 faldo:location ?targetMotifMatchRegionMatch160 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923162 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923153 .
?targetMotifMatchRegionMatch160 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923161 .
?targetMotifMatchRegionMatchBeginMF_01923161 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923154 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923162 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923151, 1, (STRLEN(?templateMotifCigarP80077MF_01923151) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923151, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP80077152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923153, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923153) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923153, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923153) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_01923154) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionP80077171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923166 .
?templateMotifSequenceMatchRegionP80077171 faldo:begin ?templateMotifSequenceMatchBeginP80077172 .
?templateMotifSequenceMatchBeginP80077172 faldo:position ?templateMotifSequenceMatchBeginPositionP80077167 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077173 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923168 .
?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923176 .
?targetMotifMatchRegionMatchBeginMF_01923176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923177 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923166, 1, (STRLEN(?templateMotifCigarP80077MF_01923166) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923166, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionP80077167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923168, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923168) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923168, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923168) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_01923169) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionP80077186 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077188 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923181 .
?templateMotifSequenceMatchRegionP80077186 faldo:begin ?templateMotifSequenceMatchBeginP80077187 .
?templateMotifSequenceMatchBeginP80077187 faldo:position ?templateMotifSequenceMatchBeginPositionP80077182 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077188 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923192 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923183 .
?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923191 .
?targetMotifMatchRegionMatchBeginMF_01923191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923184 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923192 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923181, 1, (STRLEN(?templateMotifCigarP80077MF_01923181) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923181, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionP80077182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923183, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923183) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923183, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923183) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) .
BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_01923184) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t195) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch200 faldo:location ?templateMotifSequenceMatchRegionP80077201 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077203 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923196 .
?templateMotifSequenceMatchRegionP80077201 faldo:begin ?templateMotifSequenceMatchBeginP80077202 .
?templateMotifSequenceMatchBeginP80077202 faldo:position ?templateMotifSequenceMatchBeginPositionP80077197 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077203 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch204 faldo:location ?targetMotifMatchRegionMatch205 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923207 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923198 .
?targetMotifMatchRegionMatch205 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923206 .
?targetMotifMatchRegionMatchBeginMF_01923206 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923199 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923207 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923196, 1, (STRLEN(?templateMotifCigarP80077MF_01923196) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923196, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP80077197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1208) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923198, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923198) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923198, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923198) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), '')))), '[^-]', ''))) AS ?step2209) .
BIND(((?step2209 + ?targetMotifMatchRegionMatchBeginPositionMF_01923199) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t210) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch215 faldo:location ?templateMotifSequenceMatchRegionP80077216 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077218 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923211 .
?templateMotifSequenceMatchRegionP80077216 faldo:begin ?templateMotifSequenceMatchBeginP80077217 .
?templateMotifSequenceMatchBeginP80077217 faldo:position ?templateMotifSequenceMatchBeginPositionP80077212 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077218 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch219 faldo:location ?targetMotifMatchRegionMatch220 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923222 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923213 .
?targetMotifMatchRegionMatch220 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923221 .
?targetMotifMatchRegionMatchBeginMF_01923221 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923214 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923222 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923211, 1, (STRLEN(?templateMotifCigarP80077MF_01923211) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923211, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP80077212) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1223) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923213, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923213) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923213, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923213) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), '')))), '[^-]', ''))) AS ?step2224) .
BIND(((?step2224 + ?targetMotifMatchRegionMatchBeginPositionMF_01923214) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t225) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'P')) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch230 faldo:location ?templateMotifSequenceMatchRegionP80077231 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077233 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923226 .
?templateMotifSequenceMatchRegionP80077231 faldo:begin ?templateMotifSequenceMatchBeginP80077232 .
?templateMotifSequenceMatchBeginP80077232 faldo:position ?templateMotifSequenceMatchBeginPositionP80077227 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077233 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch234 faldo:location ?targetMotifMatchRegionMatch235 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923237 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923228 .
?targetMotifMatchRegionMatch235 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923236 .
?targetMotifMatchRegionMatchBeginMF_01923236 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923229 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923237 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923226, 1, (STRLEN(?templateMotifCigarP80077MF_01923226) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923226, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP80077227) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1238) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923228, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923228) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923228, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923228) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), '')))), '[^-]', ''))) AS ?step2239) .
BIND(((?step2239 + ?targetMotifMatchRegionMatchBeginPositionMF_01923229) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t240) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch245 faldo:location ?templateMotifSequenceMatchRegionP80077246 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077248 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923241 .
?templateMotifSequenceMatchRegionP80077246 faldo:begin ?templateMotifSequenceMatchBeginP80077247 .
?templateMotifSequenceMatchBeginP80077247 faldo:position ?templateMotifSequenceMatchBeginPositionP80077242 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077248 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch249 faldo:location ?targetMotifMatchRegionMatch250 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923252 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923243 .
?targetMotifMatchRegionMatch250 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923251 .
?targetMotifMatchRegionMatchBeginMF_01923251 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923244 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923252 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923241, 1, (STRLEN(?templateMotifCigarP80077MF_01923241) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923241, CONCAT('^(?:-*[^-]){', STR(((297 - ?templateMotifSequenceMatchBeginPositionP80077242) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923243, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923243) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923243, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923243) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) .
BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_01923244) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t255) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionP80077261 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077263 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923256 .
?templateMotifSequenceMatchRegionP80077261 faldo:begin ?templateMotifSequenceMatchBeginP80077262 .
?templateMotifSequenceMatchBeginP80077262 faldo:position ?templateMotifSequenceMatchBeginPositionP80077257 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077263 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923258 .
?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923266 .
?targetMotifMatchRegionMatchBeginMF_01923266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923267 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923256, 1, (STRLEN(?templateMotifCigarP80077MF_01923256) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923256, CONCAT('^(?:-*[^-]){', STR(((326 - ?templateMotifSequenceMatchBeginPositionP80077257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923258, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923258) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923258, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923258) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) .
BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_01923259) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs1t270) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch275 faldo:location ?templateMotifSequenceMatchRegionP80077276 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077278 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923271 .
?templateMotifSequenceMatchRegionP80077276 faldo:begin ?templateMotifSequenceMatchBeginP80077277 .
?templateMotifSequenceMatchBeginP80077277 faldo:position ?templateMotifSequenceMatchBeginPositionP80077272 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077278 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch279 faldo:location ?targetMotifMatchRegionMatch280 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923282 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923273 .
?targetMotifMatchRegionMatch280 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923281 .
?targetMotifMatchRegionMatchBeginMF_01923281 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923274 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923282 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923271, 1, (STRLEN(?templateMotifCigarP80077MF_01923271) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923271, CONCAT('^(?:-*[^-]){', STR(((330 - ?templateMotifSequenceMatchBeginPositionP80077272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1283) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923273, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923273) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923273, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923273) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), '')))), '[^-]', ''))) AS ?step2284) .
BIND(((?step2284 + ?targetMotifMatchRegionMatchBeginPositionMF_01923274) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs1t285) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch290 faldo:location ?templateMotifSequenceMatchRegionP80077291 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077293 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP80077MF_01923286 .
?templateMotifSequenceMatchRegionP80077291 faldo:begin ?templateMotifSequenceMatchBeginP80077292 .
?templateMotifSequenceMatchBeginP80077292 faldo:position ?templateMotifSequenceMatchBeginPositionP80077287 ;
faldo:reference isoform:P80077-1 .
?templateMotifSequenceProfileAlignmentOperationP80077293 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
?targetMotifMatch294 faldo:location ?targetMotifMatchRegionMatch295 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923297 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP80077MF_01923288 .
?targetMotifMatchRegionMatch295 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923296 .
?targetMotifMatchRegionMatchBeginMF_01923296 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923289 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01923297 edam:has_input signature:MF_01923 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923286, 1, (STRLEN(?templateMotifCigarP80077MF_01923286) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923286, CONCAT('^(?:-*[^-]){', STR(((334 - ?templateMotifSequenceMatchBeginPositionP80077287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1298) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923288, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923288) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923288, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923288) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), '')))), '[^-]', ''))) AS ?step2299) .
BIND(((?step2299 + ?targetMotifMatchRegionMatchBeginPositionMF_01923289) - 1) AS ?thisPositionOn101) .
BIND(?thisPositionOn101 AS ?thisPositionOn102) .
BIND(?this AS ?pfs1t300) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse99) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'I')) .
BIND(URI(CONCAT(STR(?this), '#MF_01923a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
}
"xsd:string |
