| http://purl.uniprot.org/unirules/MF_02043#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:721143 up:source unirule:MF_02043 .
_:721144 up:source unirule:MF_02043 .
_:721145 up:source unirule:MF_02043 .
_:721146 up:source unirule:MF_02043 .
_:721147 up:source unirule:MF_02043 .
_:721148 up:source unirule:MF_02043 .
_:721149 up:source unirule:MF_02043 .
_:721150 up:source unirule:MF_02043 .
_:721151 up:source unirule:MF_02043 .
_:721152 up:source unirule:MF_02043 .
_:721153 up:source unirule:MF_02043 .
_:721154 up:source unirule:MF_02043 .
_:721155 up:source unirule:MF_02043 .
_:721156 up:source unirule:MF_02043 .
_:721157 up:source unirule:MF_02043 .
_:721158 up:source unirule:MF_02043 .
_:721159 up:source unirule:MF_02043 .
_:721160 up:source unirule:MF_02043 .
_:721161 up:source unirule:MF_02043 .
_:721162 up:source unirule:MF_02043 .
_:721163 up:source unirule:MF_02043 .
_:721164 up:source unirule:MF_02043 .
_:721165 up:source unirule:MF_02043 .
_:721166 up:source unirule:MF_02043 .
_:721167 up:source unirule:MF_02043 .
_:721168 up:source unirule:MF_02043 .
_:721169 up:source unirule:MF_02043 .
_:721170 up:source unirule:MF_02043 .
_:721171 up:source unirule:MF_02043 .
_:721172 up:source unirule:MF_02043 .
_:721173 up:source unirule:MF_02043 .
_:721174 up:source unirule:MF_02043 .
_:721175 up:source unirule:MF_02043 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0000049 ,
GO:0002943 ,
GO:0010181 ,
GO:0017150 ,
keyword:285 ,
keyword:288 ,
keyword:521 ,
keyword:560 ,
keyword:694 ,
keyword:819 ,
keyword:820 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.3.1.-' ;
up:fullName 'tRNA-dihydrouridine(16) synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'U16-specific dihydrouridine synthase' ;
up:shortName 'U16-specific Dus' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'tRNA-dihydrouridine synthase C' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'dusC' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity .
?annotation9 up:cofactor chebi:58210 ;
rdf:type up:Cofactor_Annotation .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Dus family. DusC subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:58210 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:58210 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:58210 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:58210 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:58210 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interacts with tRNA; defines subfamily-specific binding signature' .
?pfsb54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interacts with tRNA' .
?pfsb60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interacts with tRNA' .
?pfsb66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interacts with tRNA; defines subfamily-specific binding signature' .
?pfsb72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interacts with tRNA; defines subfamily-specific binding signature' .
?pfsb78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interacts with tRNA' .
?pfsb84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interacts with tRNA; defines subfamily-specific binding signature' .
?pfsb90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
_:721176 a rdf:Statement ;
up:attribution _:721143 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:721177 a rdf:Statement ;
up:attribution _:721144 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:721178 a rdf:Statement ;
up:attribution _:721145 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:721179 a rdf:Statement ;
up:attribution _:721146 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:721180 a rdf:Statement ;
up:attribution _:721147 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:721181 a rdf:Statement ;
up:attribution _:721148 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:721182 a rdf:Statement ;
up:attribution _:721149 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:721183 a rdf:Statement ;
up:attribution _:721150 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:721184 a rdf:Statement ;
up:attribution _:721151 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:721185 a rdf:Statement ;
up:attribution _:721152 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:721186 a rdf:Statement ;
up:attribution _:721153 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:721187 a rdf:Statement ;
up:attribution _:721154 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:721188 a rdf:Statement ;
up:attribution _:721155 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:721189 a rdf:Statement ;
up:attribution _:721156 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:721190 a rdf:Statement ;
up:attribution _:721157 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:721191 a rdf:Statement ;
up:attribution _:721158 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:820 .
_:721192 a rdf:Statement ;
up:attribution _:721159 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010181 .
_:721193 a rdf:Statement ;
up:attribution _:721160 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000049 .
_:721194 a rdf:Statement ;
up:attribution _:721161 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0017150 .
_:721195 a rdf:Statement ;
up:attribution _:721162 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002943 .
_:721196 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:721197 a rdf:Statement ;
up:attribution _:721163 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:721198 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:721199 a rdf:Statement ;
up:attribution _:721164 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:721200 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:721201 a rdf:Statement ;
up:attribution _:721165 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:721202 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:721203 a rdf:Statement ;
up:attribution _:721166 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:721204 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:721205 a rdf:Statement ;
up:attribution _:721167 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:721206 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:721207 a rdf:Statement ;
up:attribution _:721168 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:721208 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:721209 a rdf:Statement ;
up:attribution _:721169 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:721210 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:721211 a rdf:Statement ;
up:attribution _:721170 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:721212 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:721213 a rdf:Statement ;
up:attribution _:721171 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:721214 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:721215 a rdf:Statement ;
up:attribution _:721172 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:721216 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:721217 a rdf:Statement ;
up:attribution _:721173 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:721218 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:721219 a rdf:Statement ;
up:attribution _:721174 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:721220 a rdf:Statement ;
up:source unirule:MF_02043 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:721221 a rdf:Statement ;
up:attribution _:721175 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02043
#Rule MF_02043 Created by:? on:2015-07-20 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02043 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_02043a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP3337199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_0204394 .
?templateMotifSequenceMatchRegionP3337199 faldo:begin ?templateMotifSequenceMatchBeginP33371100 .
?templateMotifSequenceMatchBeginP33371100 faldo:position ?templateMotifSequenceMatchBeginPositionP3337195 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371101 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_0204396 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043104 .
?targetMotifMatchRegionMatchBeginMF_02043104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0204397 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043105 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_0204394, 1, (STRLEN(?templateMotifCigarP33371MF_0204394) - STRLEN(REPLACE(?templateMotifCigarP33371MF_0204394, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionP3337195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_0204396, 1, (STRLEN(?targetMotifMatchCigarP33371MF_0204396) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_0204396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_0204396, 1, (STRLEN(?targetMotifMatchCigarP33371MF_0204396) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_0204396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0204397) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_0204394, 1, (STRLEN(?templateMotifCigarP33371MF_0204394) - STRLEN(REPLACE(?templateMotifCigarP33371MF_0204394, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP3337195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_0204396, 1, (STRLEN(?targetMotifMatchCigarP33371MF_0204396) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_0204396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_0204396, 1, (STRLEN(?targetMotifMatchCigarP33371MF_0204396) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_0204396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0204397) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('PM[EQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionP33371116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_02043111 .
?templateMotifSequenceMatchRegionP33371116 faldo:begin ?templateMotifSequenceMatchBeginP33371117 .
?templateMotifSequenceMatchBeginP33371117 faldo:position ?templateMotifSequenceMatchBeginPositionP33371112 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371118 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_02043113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043121 .
?targetMotifMatchRegionMatchBeginMF_02043121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02043114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043122 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043111, 1, (STRLEN(?templateMotifCigarP33371MF_02043111) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043111, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP33371112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043113, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043113) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043113, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043113) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_02043114) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043111, 1, (STRLEN(?templateMotifCigarP33371MF_02043111) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043111, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP33371112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043113, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043113) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043113, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043113) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_02043114) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER (REGEX('NG[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP33371133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_02043128 .
?templateMotifSequenceMatchRegionP33371133 faldo:begin ?templateMotifSequenceMatchBeginP33371134 .
?templateMotifSequenceMatchBeginP33371134 faldo:position ?templateMotifSequenceMatchBeginPositionP33371129 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371135 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_02043130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043138 .
?targetMotifMatchRegionMatchBeginMF_02043138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02043131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043139 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043128, 1, (STRLEN(?templateMotifCigarP33371MF_02043128) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043128, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP33371129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043130, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043130) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043130, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043130) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_02043131) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043128, 1, (STRLEN(?templateMotifCigarP33371MF_02043128) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043128, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP33371129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043130, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043130) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043130, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043130) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_02043131) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER (REGEX('[GC][RC]', SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionP33371150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_02043145 .
?templateMotifSequenceMatchRegionP33371150 faldo:begin ?templateMotifSequenceMatchBeginP33371151 .
?templateMotifSequenceMatchBeginP33371151 faldo:position ?templateMotifSequenceMatchBeginPositionP33371146 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371152 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_02043147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043155 .
?targetMotifMatchRegionMatchBeginMF_02043155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02043148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043156 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043145, 1, (STRLEN(?templateMotifCigarP33371MF_02043145) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043145, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionP33371146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043147, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043147) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043147, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043147) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_02043148) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP33371165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_02043160 .
?templateMotifSequenceMatchRegionP33371165 faldo:begin ?templateMotifSequenceMatchBeginP33371166 .
?templateMotifSequenceMatchBeginP33371166 faldo:position ?templateMotifSequenceMatchBeginPositionP33371161 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371167 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_02043162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043170 .
?targetMotifMatchRegionMatchBeginMF_02043170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02043163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043171 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043160, 1, (STRLEN(?templateMotifCigarP33371MF_02043160) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043160, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP33371161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043162, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043162) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043162, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043162) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_02043163) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP33371180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_02043175 .
?templateMotifSequenceMatchRegionP33371180 faldo:begin ?templateMotifSequenceMatchBeginP33371181 .
?templateMotifSequenceMatchBeginP33371181 faldo:position ?templateMotifSequenceMatchBeginPositionP33371176 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371182 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_02043177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043185 .
?targetMotifMatchRegionMatchBeginMF_02043185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02043178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043186 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043175, 1, (STRLEN(?templateMotifCigarP33371MF_02043175) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043175, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP33371176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043177, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043177) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043177, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043177) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_02043178) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP33371195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_02043190 .
?templateMotifSequenceMatchRegionP33371195 faldo:begin ?templateMotifSequenceMatchBeginP33371196 .
?templateMotifSequenceMatchBeginP33371196 faldo:position ?templateMotifSequenceMatchBeginPositionP33371191 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371197 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_02043192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043200 .
?targetMotifMatchRegionMatchBeginMF_02043200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02043193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043201 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043190, 1, (STRLEN(?templateMotifCigarP33371MF_02043190) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043190, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionP33371191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043192, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043192) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043192, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043192) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_02043193) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP33371210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_02043205 .
?templateMotifSequenceMatchRegionP33371210 faldo:begin ?templateMotifSequenceMatchBeginP33371211 .
?templateMotifSequenceMatchBeginP33371211 faldo:position ?templateMotifSequenceMatchBeginPositionP33371206 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371212 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_02043207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043215 .
?targetMotifMatchRegionMatchBeginMF_02043215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02043208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043216 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043205, 1, (STRLEN(?templateMotifCigarP33371MF_02043205) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043205, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP33371206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043207, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043207) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043207, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043207) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_02043208) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP33371225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_02043220 .
?templateMotifSequenceMatchRegionP33371225 faldo:begin ?templateMotifSequenceMatchBeginP33371226 .
?templateMotifSequenceMatchBeginP33371226 faldo:position ?templateMotifSequenceMatchBeginPositionP33371221 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371227 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_02043222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043230 .
?targetMotifMatchRegionMatchBeginMF_02043230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02043223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043231 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043220, 1, (STRLEN(?templateMotifCigarP33371MF_02043220) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043220, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP33371221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043222, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043222) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043222, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043222) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_02043223) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP33371240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_02043235 .
?templateMotifSequenceMatchRegionP33371240 faldo:begin ?templateMotifSequenceMatchBeginP33371241 .
?templateMotifSequenceMatchBeginP33371241 faldo:position ?templateMotifSequenceMatchBeginPositionP33371236 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371242 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_02043237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043245 .
?targetMotifMatchRegionMatchBeginMF_02043245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02043238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043246 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043235, 1, (STRLEN(?templateMotifCigarP33371MF_02043235) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043235, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionP33371236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043237, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043237) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043237, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043237) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_02043238) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP33371255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_02043250 .
?templateMotifSequenceMatchRegionP33371255 faldo:begin ?templateMotifSequenceMatchBeginP33371256 .
?templateMotifSequenceMatchBeginP33371256 faldo:position ?templateMotifSequenceMatchBeginPositionP33371251 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371257 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_02043252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043260 .
?targetMotifMatchRegionMatchBeginMF_02043260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02043253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043261 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043250, 1, (STRLEN(?templateMotifCigarP33371MF_02043250) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043250, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP33371251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043252, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043252) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043252, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043252) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_02043253) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP33371270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_02043265 .
?templateMotifSequenceMatchRegionP33371270 faldo:begin ?templateMotifSequenceMatchBeginP33371271 .
?templateMotifSequenceMatchBeginP33371271 faldo:position ?templateMotifSequenceMatchBeginPositionP33371266 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371272 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043276 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_02043267 .
?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043275 .
?targetMotifMatchRegionMatchBeginMF_02043275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02043268 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043276 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043265, 1, (STRLEN(?templateMotifCigarP33371MF_02043265) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043265, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionP33371266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043267, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043267) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043267, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043267) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_02043268) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP33371285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33371287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33371MF_02043280 .
?templateMotifSequenceMatchRegionP33371285 faldo:begin ?templateMotifSequenceMatchBeginP33371286 .
?templateMotifSequenceMatchBeginP33371286 faldo:position ?templateMotifSequenceMatchBeginPositionP33371281 ;
faldo:reference isoform:P33371-1 .
?templateMotifSequenceProfileAlignmentOperationP33371287 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02043291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33371MF_02043282 .
?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02043290 .
?targetMotifMatchRegionMatchBeginMF_02043290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02043283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02043291 edam:has_input signature:MF_02043 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33371MF_02043280, 1, (STRLEN(?templateMotifCigarP33371MF_02043280) - STRLEN(REPLACE(?templateMotifCigarP33371MF_02043280, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionP33371281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33371MF_02043282, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043282) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33371MF_02043282, 1, (STRLEN(?targetMotifMatchCigarP33371MF_02043282) - STRLEN(REPLACE(?targetMotifMatchCigarP33371MF_02043282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_02043283) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t294) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse91) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02043a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
}
"xsd:string |
