| http://purl.uniprot.org/unirules/MF_02074#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:733973 up:source unirule:MF_02074 .
_:733974 up:source unirule:MF_02074 .
_:733975 up:source unirule:MF_02074 .
_:733976 up:source unirule:MF_02074 .
_:733977 up:source unirule:MF_02074 .
_:733978 up:source unirule:MF_02074 .
_:733979 up:source unirule:MF_02074 .
_:733980 up:source unirule:MF_02074 .
_:733981 up:source unirule:MF_02074 .
_:733982 up:source unirule:MF_02074 .
_:733983 up:source unirule:MF_02074 .
_:733984 up:source unirule:MF_02074 .
_:733985 up:source unirule:MF_02074 .
_:733986 up:source unirule:MF_02074 .
_:733987 up:source unirule:MF_02074 .
_:733988 up:source unirule:MF_02074 .
_:733989 up:source unirule:MF_02074 .
_:733990 up:source unirule:MF_02074 .
_:733991 up:source unirule:MF_02074 .
_:733992 up:source unirule:MF_02074 .
_:733993 up:source unirule:MF_02074 .
_:733994 up:source unirule:MF_02074 .
_:733995 up:source unirule:MF_02074 .
_:733996 up:source unirule:MF_02074 .
_:733997 up:source unirule:MF_02074 .
_:733998 up:source unirule:MF_02074 .
_:733999 up:source unirule:MF_02074 .
_:734000 up:source unirule:MF_02074 .
_:734001 up:source unirule:MF_02074 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0050660 ,
GO:0050661 ,
GO:0050664 ,
GO:0051287 ,
keyword:274 ,
keyword:285 ,
keyword:520 ,
keyword:521 ,
keyword:547 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.6.3.5' ;
up:fullName 'Renalase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the oxidation of the 1,2-dihydro- and 1,6-dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P)+. May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 up:cofactor chebi:57692 ;
rdf:type up:Cofactor_Annotation .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the bacterial renalase family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:57692 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:57692 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf ?molecule31 .
?molecule31 rdfs:label 'substrate' .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf ?molecule39 .
?molecule39 rdfs:label 'substrate' .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:57692 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:57692 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:57692 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf ?molecule68 .
?molecule68 rdfs:label 'substrate' .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf chebi:57692 .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf ?molecule83 .
?molecule83 rdfs:label 'substrate' .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:57692 .
_:734002 a rdf:Statement ;
up:attribution _:733973 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:734003 a rdf:Statement ;
up:attribution _:733974 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:734004 a rdf:Statement ;
up:attribution _:733975 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:734005 a rdf:Statement ;
up:attribution _:733976 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:734006 a rdf:Statement ;
up:attribution _:733977 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:734007 a rdf:Statement ;
up:attribution _:733978 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:734008 a rdf:Statement ;
up:attribution _:733979 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:734009 a rdf:Statement ;
up:attribution _:733980 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:734010 a rdf:Statement ;
up:attribution _:733981 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:734011 a rdf:Statement ;
up:attribution _:733982 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:734012 a rdf:Statement ;
up:attribution _:733983 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:734013 a rdf:Statement ;
up:attribution _:733984 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:734014 a rdf:Statement ;
up:attribution _:733985 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:734015 a rdf:Statement ;
up:attribution _:733986 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:734016 a rdf:Statement ;
up:attribution _:733987 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050660 .
_:734017 a rdf:Statement ;
up:attribution _:733988 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050661 .
_:734018 a rdf:Statement ;
up:attribution _:733989 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051287 .
_:734019 a rdf:Statement ;
up:attribution _:733990 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050664 .
_:734020 a rdf:Statement ;
up:source unirule:MF_02074 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:734021 a rdf:Statement ;
up:attribution _:733991 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:734022 a rdf:Statement ;
up:source unirule:MF_02074 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:734023 a rdf:Statement ;
up:attribution _:733992 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:734024 a rdf:Statement ;
up:source unirule:MF_02074 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:734025 a rdf:Statement ;
up:attribution _:733993 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:734026 a rdf:Statement ;
up:source unirule:MF_02074 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:734027 a rdf:Statement ;
up:attribution _:733994 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:734028 a rdf:Statement ;
up:source unirule:MF_02074 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:734029 a rdf:Statement ;
up:attribution _:733995 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:734030 a rdf:Statement ;
up:source unirule:MF_02074 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:734031 a rdf:Statement ;
up:attribution _:733996 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:734032 a rdf:Statement ;
up:source unirule:MF_02074 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:734033 a rdf:Statement ;
up:attribution _:733997 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:734034 a rdf:Statement ;
up:source unirule:MF_02074 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:734035 a rdf:Statement ;
up:attribution _:733998 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:734036 a rdf:Statement ;
up:source unirule:MF_02074 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:734037 a rdf:Statement ;
up:attribution _:733999 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:734038 a rdf:Statement ;
up:source unirule:MF_02074 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:734039 a rdf:Statement ;
up:attribution _:734000 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:734040 a rdf:Statement ;
up:source unirule:MF_02074 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:734041 a rdf:Statement ;
up:attribution _:734001 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02074
#Rule MF_02074 Created by:? on:2016-08-30 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02074 .
?thisOrganism rdfs:subClassOf+ taxon:72274 .
BIND(URI(CONCAT(STR(?this), '#MF_02074a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionQ48MT798 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ48MT7100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ48MT7MF_0207493 .
?templateMotifSequenceMatchRegionQ48MT798 faldo:begin ?templateMotifSequenceMatchBeginQ48MT799 .
?templateMotifSequenceMatchBeginQ48MT799 faldo:position ?templateMotifSequenceMatchBeginPositionQ48MT794 ;
faldo:reference isoform:Q48MT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ48MT7100 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02074104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ48MT7MF_0207495 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02074103 .
?targetMotifMatchRegionMatchBeginMF_02074103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0207496 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02074104 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_0207493, 1, (STRLEN(?templateMotifCigarQ48MT7MF_0207493) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_0207493, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionQ48MT794) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_0207495, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_0207495) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_0207495, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_0207495, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_0207495) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_0207495, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0207496) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_0207493, 1, (STRLEN(?templateMotifCigarQ48MT7MF_0207493) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_0207493, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionQ48MT794) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_0207495, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_0207495) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_0207495, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_0207495, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_0207495) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_0207495, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0207496) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER (REGEX('[DE]K', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionQ48MT7115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ48MT7117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ48MT7MF_02074110 .
?templateMotifSequenceMatchRegionQ48MT7115 faldo:begin ?templateMotifSequenceMatchBeginQ48MT7116 .
?templateMotifSequenceMatchBeginQ48MT7116 faldo:position ?templateMotifSequenceMatchBeginPositionQ48MT7111 ;
faldo:reference isoform:Q48MT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ48MT7117 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02074121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ48MT7MF_02074112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02074120 .
?targetMotifMatchRegionMatchBeginMF_02074120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02074113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02074121 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074110, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074110) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074110, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ48MT7111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074112, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074112) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074112, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074112) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_02074113) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074110, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074110) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074110, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionQ48MT7111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074112, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074112) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074112, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074112) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_02074113) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)) = 'QY')) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionQ48MT7132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ48MT7134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ48MT7MF_02074127 .
?templateMotifSequenceMatchRegionQ48MT7132 faldo:begin ?templateMotifSequenceMatchBeginQ48MT7133 .
?templateMotifSequenceMatchBeginQ48MT7133 faldo:position ?templateMotifSequenceMatchBeginPositionQ48MT7128 ;
faldo:reference isoform:Q48MT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ48MT7134 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02074138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ48MT7MF_02074129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02074137 .
?targetMotifMatchRegionMatchBeginMF_02074137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02074130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02074138 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074127, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074127) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074127, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionQ48MT7128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074129, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074129) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074129, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074129) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_02074130) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074127, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074127) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074127, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionQ48MT7128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074129, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074129) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074129, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074129) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_02074130) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse29) .
FILTER (REGEX('YFT[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionQ48MT7149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ48MT7151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ48MT7MF_02074144 .
?templateMotifSequenceMatchRegionQ48MT7149 faldo:begin ?templateMotifSequenceMatchBeginQ48MT7150 .
?templateMotifSequenceMatchBeginQ48MT7150 faldo:position ?templateMotifSequenceMatchBeginPositionQ48MT7145 ;
faldo:reference isoform:Q48MT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ48MT7151 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02074155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ48MT7MF_02074146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02074154 .
?targetMotifMatchRegionMatchBeginMF_02074154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02074147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02074155 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074144, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074144) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074144, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionQ48MT7145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074146, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074146) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074146, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074146) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_02074147) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074144, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074144) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074144, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionQ48MT7145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074146, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074146) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074146, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074146) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_02074147) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)) = 'SPD')) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionQ48MT7166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ48MT7168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ48MT7MF_02074161 .
?templateMotifSequenceMatchRegionQ48MT7166 faldo:begin ?templateMotifSequenceMatchBeginQ48MT7167 .
?templateMotifSequenceMatchBeginQ48MT7167 faldo:position ?templateMotifSequenceMatchBeginPositionQ48MT7162 ;
faldo:reference isoform:Q48MT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ48MT7168 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02074172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ48MT7MF_02074163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02074171 .
?targetMotifMatchRegionMatchBeginMF_02074171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02074164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02074172 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074161, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074161) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074161, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionQ48MT7162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074163, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074163) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074163, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074163) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_02074164) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER (REGEX('[AS]', SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionQ48MT7181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ48MT7183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ48MT7MF_02074176 .
?templateMotifSequenceMatchRegionQ48MT7181 faldo:begin ?templateMotifSequenceMatchBeginQ48MT7182 .
?templateMotifSequenceMatchBeginQ48MT7182 faldo:position ?templateMotifSequenceMatchBeginPositionQ48MT7177 ;
faldo:reference isoform:Q48MT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ48MT7183 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02074187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ48MT7MF_02074178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02074186 .
?targetMotifMatchRegionMatchBeginMF_02074186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02074179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02074187 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074176, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074176) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074176, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionQ48MT7177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074178, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074178) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074178, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074178) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_02074179) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionQ48MT7196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ48MT7198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ48MT7MF_02074191 .
?templateMotifSequenceMatchRegionQ48MT7196 faldo:begin ?templateMotifSequenceMatchBeginQ48MT7197 .
?templateMotifSequenceMatchBeginQ48MT7197 faldo:position ?templateMotifSequenceMatchBeginPositionQ48MT7192 ;
faldo:reference isoform:Q48MT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ48MT7198 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02074202 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ48MT7MF_02074193 .
?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02074201 .
?targetMotifMatchRegionMatchBeginMF_02074201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02074194 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02074202 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074191, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074191) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074191, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionQ48MT7192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074193, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074193) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074193, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074193) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_02074194) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t205) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionQ48MT7211 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ48MT7213 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ48MT7MF_02074206 .
?templateMotifSequenceMatchRegionQ48MT7211 faldo:begin ?templateMotifSequenceMatchBeginQ48MT7212 .
?templateMotifSequenceMatchBeginQ48MT7212 faldo:position ?templateMotifSequenceMatchBeginPositionQ48MT7207 ;
faldo:reference isoform:Q48MT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ48MT7213 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02074217 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ48MT7MF_02074208 .
?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02074216 .
?targetMotifMatchRegionMatchBeginMF_02074216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02074209 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02074217 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074206, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074206) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074206, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionQ48MT7207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074208, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074208) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074208, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074208) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_02074209) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionQ48MT7226 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ48MT7228 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ48MT7MF_02074221 .
?templateMotifSequenceMatchRegionQ48MT7226 faldo:begin ?templateMotifSequenceMatchBeginQ48MT7227 .
?templateMotifSequenceMatchBeginQ48MT7227 faldo:position ?templateMotifSequenceMatchBeginPositionQ48MT7222 ;
faldo:reference isoform:Q48MT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ48MT7228 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02074232 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ48MT7MF_02074223 .
?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02074231 .
?targetMotifMatchRegionMatchBeginMF_02074231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02074224 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02074232 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074221, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074221) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074221, CONCAT('^(?:-*[^-]){', STR(((302 - ?templateMotifSequenceMatchBeginPositionQ48MT7222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074223, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074223) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074223, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074223) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_02074224) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t235) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionQ48MT7241 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ48MT7243 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ48MT7MF_02074236 .
?templateMotifSequenceMatchRegionQ48MT7241 faldo:begin ?templateMotifSequenceMatchBeginQ48MT7242 .
?templateMotifSequenceMatchBeginQ48MT7242 faldo:position ?templateMotifSequenceMatchBeginPositionQ48MT7237 ;
faldo:reference isoform:Q48MT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ48MT7243 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02074247 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ48MT7MF_02074238 .
?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02074246 .
?targetMotifMatchRegionMatchBeginMF_02074246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02074239 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02074247 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074236, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074236) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074236, CONCAT('^(?:-*[^-]){', STR(((308 - ?templateMotifSequenceMatchBeginPositionQ48MT7237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074238, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074238) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074238, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074238) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_02074239) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionQ48MT7256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ48MT7258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ48MT7MF_02074251 .
?templateMotifSequenceMatchRegionQ48MT7256 faldo:begin ?templateMotifSequenceMatchBeginQ48MT7257 .
?templateMotifSequenceMatchBeginQ48MT7257 faldo:position ?templateMotifSequenceMatchBeginPositionQ48MT7252 ;
faldo:reference isoform:Q48MT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ48MT7258 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02074262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ48MT7MF_02074253 .
?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02074261 .
?targetMotifMatchRegionMatchBeginMF_02074261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02074254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02074262 edam:has_input signature:MF_02074 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ48MT7MF_02074251, 1, (STRLEN(?templateMotifCigarQ48MT7MF_02074251) - STRLEN(REPLACE(?templateMotifCigarQ48MT7MF_02074251, CONCAT('^(?:-*[^-]){', STR(((309 - ?templateMotifSequenceMatchBeginPositionQ48MT7252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074253, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074253) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ48MT7MF_02074253, 1, (STRLEN(?targetMotifMatchCigarQ48MT7MF_02074253) - STRLEN(REPLACE(?targetMotifMatchCigarQ48MT7MF_02074253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) .
BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_02074254) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t265) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'V')) .
BIND(URI(CONCAT(STR(?this), '#MF_02074a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
}
"xsd:string |
