| http://purl.uniprot.org/unirules/MF_03101#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:814745 up:source unirule:MF_03101 .
_:814746 up:source unirule:MF_03101 .
_:814747 up:source unirule:MF_03101 .
_:814748 up:source unirule:MF_03101 .
_:814749 up:source unirule:MF_03101 .
_:814750 up:source unirule:MF_03101 .
_:814751 up:source unirule:MF_03101 .
_:814752 up:source unirule:MF_03101 .
_:814753 up:source unirule:MF_03101 .
_:814754 up:source unirule:MF_03101 .
_:814755 up:source unirule:MF_03101 .
_:814756 up:source unirule:MF_03101 .
_:814757 up:source unirule:MF_03101 .
_:814758 up:source unirule:MF_03101 .
_:814759 up:source unirule:MF_03101 .
_:814760 up:source unirule:MF_03101 .
_:814761 up:source unirule:MF_03101 .
_:814762 up:source unirule:MF_03101 .
_:814763 up:source unirule:MF_03101 .
_:814764 up:source unirule:MF_03101 .
_:814765 up:source unirule:MF_03101 .
_:814766 up:source unirule:MF_03101 .
_:814767 up:source unirule:MF_03101 .
_:814768 up:source unirule:MF_03101 .
_:814769 up:source unirule:MF_03101 .
_:814770 up:source unirule:MF_03101 .
_:814771 up:source unirule:MF_03101 .
_:814772 up:source unirule:MF_03101 .
_:814773 up:source unirule:MF_03101 .
_:814774 up:source unirule:MF_03101 .
_:814775 up:source unirule:MF_03101 .
_:814776 up:source unirule:MF_03101 .
_:814777 up:source unirule:MF_03101 .
_:814778 up:source unirule:MF_03101 .
_:814779 up:source unirule:MF_03101 .
_:814780 up:source unirule:MF_03101 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation3 ,
?annotation4 ;
up:classifiedWith GO:0008612 ,
GO:0019135 ,
keyword:386 ,
keyword:408 ,
keyword:479 ,
keyword:503 ,
keyword:560 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 up:cofactor chebi:29033 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 Fe(2+) ions per subunit.' .
?annotation3 a up:Pathway_Annotation ;
rdfs:comment 'Protein modification; eIF5A hypusination.' .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the deoxyhypusine hydroxylase family.' .
?case5 up:classifiedWith keyword:7 .
?case6 up:classifiedWith GO:0005634 ,
GO:0005737 ,
keyword:539 ,
keyword:963 .
?case8 up:alternativeName ?name10 ,
?name11 ,
?name12 ;
up:recommendedName ?name9 .
?name9 up:ecName '1.14.99.29' ;
up:fullName 'Deoxyhypusine hydroxylase' ;
up:shortName 'DOHH' ;
rdf:type up:Structured_Name .
?name10 up:fullName 'Deoxyhypusine dioxygenase' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'Deoxyhypusine monooxygenase' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'Ligand of eIF5A protein 1' ;
rdf:type up:Structured_Name .
?case13 up:classifiedWith GO:0042406 ,
keyword:256 ,
keyword:472 .
?case16 up:alternativeName ?name18 ,
?name19 ;
up:recommendedName ?name17 .
?name17 up:ecName '1.14.99.29' ;
up:fullName 'Deoxyhypusine hydroxylase' ;
up:shortName 'DOHH' ;
rdf:type up:Structured_Name .
?name18 up:fullName 'Deoxyhypusine dioxygenase' ;
rdf:type up:Structured_Name .
?name19 up:fullName 'Deoxyhypusine monooxygenase' ;
rdf:type up:Structured_Name .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N-acetylserine' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:24875 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:24875 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:24875 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:24875 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:24875 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:24875 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:24875 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:24875 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
_:814781 a rdf:Statement ;
up:attribution _:814745 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:814782 a rdf:Statement ;
up:attribution _:814746 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:814783 a rdf:Statement ;
up:attribution _:814747 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:814784 a rdf:Statement ;
up:attribution _:814748 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:814785 a rdf:Statement ;
up:attribution _:814749 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:386 .
_:814786 a rdf:Statement ;
up:attribution _:814750 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:814787 a rdf:Statement ;
up:attribution _:814751 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:814788 a rdf:Statement ;
up:attribution _:814752 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:503 .
_:814789 a rdf:Statement ;
up:attribution _:814753 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:814790 a rdf:Statement ;
up:attribution _:814754 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019135 .
_:814791 a rdf:Statement ;
up:attribution _:814755 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008612 .
_:814792 a rdf:Statement ;
up:attribution _:814756 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:814793 a rdf:Statement ;
up:attribution _:814757 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:814794 a rdf:Statement ;
up:attribution _:814758 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:814795 a rdf:Statement ;
up:attribution _:814759 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:814796 a rdf:Statement ;
up:attribution _:814760 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005634 .
_:814797 a rdf:Statement ;
up:attribution _:814761 ;
rdf:subject ?case8 ;
rdf:predicate up:recommendedName ;
rdf:object ?name9 .
_:814798 a rdf:Statement ;
up:attribution _:814762 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:814799 a rdf:Statement ;
up:attribution _:814763 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:814800 a rdf:Statement ;
up:attribution _:814764 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:814801 a rdf:Statement ;
up:attribution _:814765 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:256 .
_:814802 a rdf:Statement ;
up:attribution _:814766 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:814803 a rdf:Statement ;
up:attribution _:814767 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042406 .
_:814804 a rdf:Statement ;
up:attribution _:814768 ;
rdf:subject ?case16 ;
rdf:predicate up:recommendedName ;
rdf:object ?name17 .
_:814805 a rdf:Statement ;
up:attribution _:814769 ;
rdf:subject ?case16 ;
rdf:predicate up:alternativeName ;
rdf:object ?name18 .
_:814806 a rdf:Statement ;
up:attribution _:814770 ;
rdf:subject ?case16 ;
rdf:predicate up:alternativeName ;
rdf:object ?name19 .
_:814807 a rdf:Statement ;
up:source unirule:MF_03101 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:814808 a rdf:Statement ;
up:attribution _:814771 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:814809 a rdf:Statement ;
up:source unirule:MF_03101 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:814810 a rdf:Statement ;
up:attribution _:814772 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:814811 a rdf:Statement ;
up:source unirule:MF_03101 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:814812 a rdf:Statement ;
up:attribution _:814773 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:814813 a rdf:Statement ;
up:source unirule:MF_03101 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:814814 a rdf:Statement ;
up:attribution _:814774 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:814815 a rdf:Statement ;
up:source unirule:MF_03101 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:814816 a rdf:Statement ;
up:attribution _:814775 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:814817 a rdf:Statement ;
up:source unirule:MF_03101 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:814818 a rdf:Statement ;
up:attribution _:814776 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:814819 a rdf:Statement ;
up:source unirule:MF_03101 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:814820 a rdf:Statement ;
up:attribution _:814777 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:814821 a rdf:Statement ;
up:source unirule:MF_03101 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:814822 a rdf:Statement ;
up:attribution _:814778 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:814823 a rdf:Statement ;
up:source unirule:MF_03101 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:814824 a rdf:Statement ;
up:attribution _:814779 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:814825 a rdf:Statement ;
up:source unirule:MF_03101 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:814826 a rdf:Statement ;
up:attribution _:814780 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03101
#Rule MF_03101 Created by:? on:2012-10-01 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03101 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03101a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP4712093 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4712095 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP47120MF_0310188 .
?templateMotifSequenceMatchRegionP4712093 faldo:begin ?templateMotifSequenceMatchBeginP4712094 .
?templateMotifSequenceMatchBeginP4712094 faldo:position ?templateMotifSequenceMatchBeginPositionP4712089 ;
faldo:reference isoform:P47120-1 .
?templateMotifSequenceProfileAlignmentOperationP4712095 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0310199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP47120MF_0310190 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0310198 .
?targetMotifMatchRegionMatchBeginMF_0310198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0310191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0310199 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacetyl) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47120MF_0310188, 1, (STRLEN(?templateMotifCigarP47120MF_0310188) - STRLEN(REPLACE(?templateMotifCigarP47120MF_0310188, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP4712089) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47120MF_0310190, 1, (STRLEN(?targetMotifMatchCigarP47120MF_0310190) - STRLEN(REPLACE(?targetMotifMatchCigarP47120MF_0310190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47120MF_0310190, 1, (STRLEN(?targetMotifMatchCigarP47120MF_0310190) - STRLEN(REPLACE(?targetMotifMatchCigarP47120MF_0310190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0310191) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionQ9BU89108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BU89MF_03101103 .
?templateMotifSequenceMatchRegionQ9BU89108 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89109 .
?templateMotifSequenceMatchBeginQ9BU89109 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89104 ;
faldo:reference isoform:Q9BU89-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BU89110 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BU89MF_03101105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101113 .
?targetMotifMatchRegionMatchBeginMF_03101113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03101114 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101103, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101103) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101103, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ9BU89104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101105, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101105) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101105, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101105) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_03101106) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs2t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionQ9BU89123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BU89MF_03101118 .
?templateMotifSequenceMatchRegionQ9BU89123 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89124 .
?templateMotifSequenceMatchBeginQ9BU89124 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89119 ;
faldo:reference isoform:Q9BU89-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BU89125 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BU89MF_03101120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101128 .
?targetMotifMatchRegionMatchBeginMF_03101128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03101129 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101118, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101118) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101118, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionQ9BU89119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101120, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101120) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101120, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101120) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_03101121) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionQ9BU89138 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89140 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BU89MF_03101133 .
?templateMotifSequenceMatchRegionQ9BU89138 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89139 .
?templateMotifSequenceMatchBeginQ9BU89139 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89134 ;
faldo:reference isoform:Q9BU89-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BU89140 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101144 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BU89MF_03101135 .
?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101143 .
?targetMotifMatchRegionMatchBeginMF_03101143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101136 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03101144 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101133, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101133) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101133, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionQ9BU89134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101135, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101135) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101135, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101135) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_03101136) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs2t147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionQ9BU89153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BU89MF_03101148 .
?templateMotifSequenceMatchRegionQ9BU89153 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89154 .
?templateMotifSequenceMatchBeginQ9BU89154 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89149 ;
faldo:reference isoform:Q9BU89-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BU89155 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BU89MF_03101150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101158 .
?targetMotifMatchRegionMatchBeginMF_03101158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03101159 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101148, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101148) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101148, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionQ9BU89149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101150, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101150) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101150, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101150) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_03101151) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs2t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionQ9BU89168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BU89MF_03101163 .
?templateMotifSequenceMatchRegionQ9BU89168 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89169 .
?templateMotifSequenceMatchBeginQ9BU89169 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89164 ;
faldo:reference isoform:Q9BU89-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BU89170 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BU89MF_03101165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101173 .
?targetMotifMatchRegionMatchBeginMF_03101173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03101174 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101163, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101163) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101163, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionQ9BU89164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101165, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101165) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101165, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101165) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_03101166) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs2t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionQ9BU89183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BU89MF_03101178 .
?templateMotifSequenceMatchRegionQ9BU89183 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89184 .
?templateMotifSequenceMatchBeginQ9BU89184 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89179 ;
faldo:reference isoform:Q9BU89-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BU89185 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BU89MF_03101180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101188 .
?targetMotifMatchRegionMatchBeginMF_03101188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03101189 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101178, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101178) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101178, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionQ9BU89179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101180, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101180) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101180, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101180) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_03101181) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs2t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionQ9BU89198 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89200 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BU89MF_03101193 .
?templateMotifSequenceMatchRegionQ9BU89198 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89199 .
?templateMotifSequenceMatchBeginQ9BU89199 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89194 ;
faldo:reference isoform:Q9BU89-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BU89200 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101204 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BU89MF_03101195 .
?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101203 .
?targetMotifMatchRegionMatchBeginMF_03101203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101196 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03101204 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101193, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101193) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101193, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionQ9BU89194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101195, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101195) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101195, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101195) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_03101196) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs2t207) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionQ9BU89213 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89215 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BU89MF_03101208 .
?templateMotifSequenceMatchRegionQ9BU89213 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89214 .
?templateMotifSequenceMatchBeginQ9BU89214 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89209 ;
faldo:reference isoform:Q9BU89-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BU89215 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101219 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BU89MF_03101210 .
?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101218 .
?targetMotifMatchRegionMatchBeginMF_03101218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101211 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03101219 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101208, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101208) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101208, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionQ9BU89209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101210, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101210) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101210, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101210) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_03101211) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs2t222) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch227 faldo:location ?templateMotifSequenceMatchRegionP47120228 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP47120230 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP47120MF_03101223 .
?templateMotifSequenceMatchRegionP47120228 faldo:begin ?templateMotifSequenceMatchBeginP47120229 .
?templateMotifSequenceMatchBeginP47120229 faldo:position ?templateMotifSequenceMatchBeginPositionP47120224 ;
faldo:reference isoform:P47120-1 .
?templateMotifSequenceProfileAlignmentOperationP47120230 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch231 faldo:location ?targetMotifMatchRegionMatch232 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101234 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP47120MF_03101225 .
?targetMotifMatchRegionMatch232 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101233 .
?targetMotifMatchRegionMatchBeginMF_03101233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101226 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03101234 edam:has_input signature:MF_03101 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47120MF_03101223, 1, (STRLEN(?templateMotifCigarP47120MF_03101223) - STRLEN(REPLACE(?templateMotifCigarP47120MF_03101223, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP47120224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47120MF_03101225, 1, (STRLEN(?targetMotifMatchCigarP47120MF_03101225) - STRLEN(REPLACE(?targetMotifMatchCigarP47120MF_03101225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47120MF_03101225, 1, (STRLEN(?targetMotifMatchCigarP47120MF_03101225) - STRLEN(REPLACE(?targetMotifMatchCigarP47120MF_03101225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) .
BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_03101226) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs3t237) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag238) .
}
BIND(IF(BOUND(?tagacetyl), ?caseWithTag238, ?UNBOUND_VARIABLE) AS ?case5) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(?this AS ?case8) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a12')) AS ?name12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7214 .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7214 .
})) .
BIND(?this AS ?case15) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:4930 .
})) .
BIND(?this AS ?case16) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a17')) AS ?name17) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a18')) AS ?name18) .
BIND(URI(CONCAT(STR(?this), '#MF_03101a19')) AS ?name19) .
}
}
"xsd:string |
