| http://purl.uniprot.org/unirules/MF_03186#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:869790 up:source unirule:MF_03186 .
_:869791 up:source unirule:MF_03186 .
_:869792 up:source unirule:MF_03186 .
_:869793 up:source unirule:MF_03186 .
_:869794 up:source unirule:MF_03186 .
_:869795 up:source unirule:MF_03186 .
_:869796 up:source unirule:MF_03186 .
_:869797 up:source unirule:MF_03186 .
_:869798 up:source unirule:MF_03186 .
_:869799 up:source unirule:MF_03186 .
_:869800 up:source unirule:MF_03186 .
_:869801 up:source unirule:MF_03186 .
_:869802 up:source unirule:MF_03186 .
_:869803 up:source unirule:MF_03186 .
_:869804 up:source unirule:MF_03186 .
_:869805 up:source unirule:MF_03186 .
_:869806 up:source unirule:MF_03186 .
_:869807 up:source unirule:MF_03186 .
_:869808 up:source unirule:MF_03186 .
_:869809 up:source unirule:MF_03186 .
_:869810 up:source unirule:MF_03186 .
_:869811 up:source unirule:MF_03186 .
_:869812 up:source unirule:MF_03186 .
_:869813 up:source unirule:MF_03186 .
_:869814 up:source unirule:MF_03186 .
_:869815 up:source unirule:MF_03186 .
_:869816 up:source unirule:MF_03186 .
_:869817 up:source unirule:MF_03186 .
_:869818 up:source unirule:MF_03186 .
_:869819 up:source unirule:MF_03186 .
_:869820 up:source unirule:MF_03186 .
_:869821 up:source unirule:MF_03186 .
_:869822 up:source unirule:MF_03186 .
_:869823 up:source unirule:MF_03186 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0003872 ,
GO:0005737 ,
GO:0006096 ,
keyword:21 ,
keyword:324 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.11' ;
up:fullName 'ATP-dependent 6-phosphofructokinase' ;
up:shortName 'ATP-PFK' ,
'Phosphofructokinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Phosphohexokinase' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Activity_Regulation_Annotation ;
rdfs:comment 'Allosterically activated by AMP.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment "Belongs to the phosphofructokinase type A (PFKA) family. PPi-dependent PFK group II subfamily. Atypical ATP-dependent clade 'X' sub-subfamily." .
?case11 up:classifiedWith keyword:327 ,
keyword:576 .
?case12 up:classifiedWith keyword:963 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for substrate specificity; cannot use PPi as phosphoryl donor' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:30616 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:30616 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:30616 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf ?molecule45 .
?molecule45 rdfs:label 'substrate' .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf ?molecule53 .
?molecule53 rdfs:label 'substrate' .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf ?molecule61 .
?molecule61 rdfs:label 'substrate' .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:18420 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf ?molecule82 .
?molecule82 rdfs:label 'substrate' .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Peroxisomal targeting signal' .
?pfsb87 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
_:869824 a rdf:Statement ;
up:attribution _:869790 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:869825 a rdf:Statement ;
up:attribution _:869791 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:869826 a rdf:Statement ;
up:attribution _:869792 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:869827 a rdf:Statement ;
up:attribution _:869793 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:869828 a rdf:Statement ;
up:attribution _:869794 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:869829 a rdf:Statement ;
up:attribution _:869795 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:869830 a rdf:Statement ;
up:attribution _:869796 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:869831 a rdf:Statement ;
up:attribution _:869797 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:869832 a rdf:Statement ;
up:attribution _:869798 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:869833 a rdf:Statement ;
up:attribution _:869799 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:21 .
_:869834 a rdf:Statement ;
up:attribution _:869800 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:869835 a rdf:Statement ;
up:attribution _:869801 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:869836 a rdf:Statement ;
up:attribution _:869802 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:324 .
_:869837 a rdf:Statement ;
up:attribution _:869803 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:869838 a rdf:Statement ;
up:attribution _:869804 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:869839 a rdf:Statement ;
up:attribution _:869805 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:869840 a rdf:Statement ;
up:attribution _:869806 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:869841 a rdf:Statement ;
up:attribution _:869807 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003872 .
_:869842 a rdf:Statement ;
up:attribution _:869808 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
_:869843 a rdf:Statement ;
up:attribution _:869809 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:869844 a rdf:Statement ;
up:attribution _:869810 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:327 .
_:869845 a rdf:Statement ;
up:attribution _:869811 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:576 .
_:869846 a rdf:Statement ;
up:attribution _:869812 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:869847 a rdf:Statement ;
up:source unirule:MF_03186 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:869848 a rdf:Statement ;
up:attribution _:869813 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:869849 a rdf:Statement ;
up:source unirule:MF_03186 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:869850 a rdf:Statement ;
up:attribution _:869814 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:869851 a rdf:Statement ;
up:source unirule:MF_03186 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:869852 a rdf:Statement ;
up:attribution _:869815 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:869853 a rdf:Statement ;
up:source unirule:MF_03186 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:869854 a rdf:Statement ;
up:attribution _:869816 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:869855 a rdf:Statement ;
up:source unirule:MF_03186 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:869856 a rdf:Statement ;
up:attribution _:869817 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:869857 a rdf:Statement ;
up:source unirule:MF_03186 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:869858 a rdf:Statement ;
up:attribution _:869818 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:869859 a rdf:Statement ;
up:source unirule:MF_03186 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:869860 a rdf:Statement ;
up:attribution _:869819 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:869861 a rdf:Statement ;
up:source unirule:MF_03186 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:869862 a rdf:Statement ;
up:attribution _:869820 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:869863 a rdf:Statement ;
up:source unirule:MF_03186 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:869864 a rdf:Statement ;
up:attribution _:869821 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:869865 a rdf:Statement ;
up:source unirule:MF_03186 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:869866 a rdf:Statement ;
up:attribution _:869822 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:869867 a rdf:Statement ;
up:source unirule:MF_03186 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:869868 a rdf:Statement ;
up:attribution _:869823 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03186
#Rule MF_03186 Created by:? on:2014-05-16 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01981 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03186a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionO1564896 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO1564898 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO15648MF_0198191 .
?templateMotifSequenceMatchRegionO1564896 faldo:begin ?templateMotifSequenceMatchBeginO1564897 .
?templateMotifSequenceMatchBeginO1564897 faldo:position ?templateMotifSequenceMatchBeginPositionO1564892 ;
faldo:reference isoform:O15648-1 .
?templateMotifSequenceProfileAlignmentOperationO1564898 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01981102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO15648MF_0198193 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01981101 .
?targetMotifMatchRegionMatchBeginMF_01981101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198194 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01981102 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_0198191, 1, (STRLEN(?templateMotifCigarO15648MF_0198191) - STRLEN(REPLACE(?templateMotifCigarO15648MF_0198191, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionO1564892) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_0198193, 1, (STRLEN(?targetMotifMatchCigarO15648MF_0198193) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_0198193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_0198193, 1, (STRLEN(?targetMotifMatchCigarO15648MF_0198193) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_0198193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0198194) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionO15648111 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO15648113 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO15648MF_01981106 .
?templateMotifSequenceMatchRegionO15648111 faldo:begin ?templateMotifSequenceMatchBeginO15648112 .
?templateMotifSequenceMatchBeginO15648112 faldo:position ?templateMotifSequenceMatchBeginPositionO15648107 ;
faldo:reference isoform:O15648-1 .
?templateMotifSequenceProfileAlignmentOperationO15648113 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01981117 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO15648MF_01981108 .
?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01981116 .
?targetMotifMatchRegionMatchBeginMF_01981116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01981109 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01981117 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981106, 1, (STRLEN(?templateMotifCigarO15648MF_01981106) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981106, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionO15648107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981108, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981108) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981108, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981108) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_01981109) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981106, 1, (STRLEN(?templateMotifCigarO15648MF_01981106) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981106, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionO15648107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981108, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981108) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981108, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981108) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_01981109) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER (REGEX('[RK][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionO15648128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO15648130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO15648MF_01981123 .
?templateMotifSequenceMatchRegionO15648128 faldo:begin ?templateMotifSequenceMatchBeginO15648129 .
?templateMotifSequenceMatchBeginO15648129 faldo:position ?templateMotifSequenceMatchBeginPositionO15648124 ;
faldo:reference isoform:O15648-1 .
?templateMotifSequenceProfileAlignmentOperationO15648130 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01981134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO15648MF_01981125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01981133 .
?targetMotifMatchRegionMatchBeginMF_01981133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01981126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01981134 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981123, 1, (STRLEN(?templateMotifCigarO15648MF_01981123) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981123, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionO15648124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981125, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981125) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981125, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981125) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_01981126) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981123, 1, (STRLEN(?templateMotifCigarO15648MF_01981123) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981123, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionO15648124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981125, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981125) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981125, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981125) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_01981126) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER (REGEX('G[DENG]G[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionO15648145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO15648147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO15648MF_01981140 .
?templateMotifSequenceMatchRegionO15648145 faldo:begin ?templateMotifSequenceMatchBeginO15648146 .
?templateMotifSequenceMatchBeginO15648146 faldo:position ?templateMotifSequenceMatchBeginPositionO15648141 ;
faldo:reference isoform:O15648-1 .
?templateMotifSequenceProfileAlignmentOperationO15648147 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01981151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO15648MF_01981142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01981150 .
?targetMotifMatchRegionMatchBeginMF_01981150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01981143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01981151 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981140, 1, (STRLEN(?templateMotifCigarO15648MF_01981140) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981140, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionO15648141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981142, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981142) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981142, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981142) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_01981143) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionO15648160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO15648162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO15648MF_01981155 .
?templateMotifSequenceMatchRegionO15648160 faldo:begin ?templateMotifSequenceMatchBeginO15648161 .
?templateMotifSequenceMatchBeginO15648161 faldo:position ?templateMotifSequenceMatchBeginPositionO15648156 ;
faldo:reference isoform:O15648-1 .
?templateMotifSequenceProfileAlignmentOperationO15648162 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01981166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO15648MF_01981157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01981165 .
?targetMotifMatchRegionMatchBeginMF_01981165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01981158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01981166 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981155, 1, (STRLEN(?templateMotifCigarO15648MF_01981155) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981155, CONCAT('^(?:-*[^-]){', STR(((227 - ?templateMotifSequenceMatchBeginPositionO15648156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981157, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981157) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981157, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981157) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_01981158) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981155, 1, (STRLEN(?templateMotifCigarO15648MF_01981155) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981155, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionO15648156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981157, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981157) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981157, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981157) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_01981158) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse43) .
FILTER (REGEX('T[ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionO15648177 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO15648179 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO15648MF_01981172 .
?templateMotifSequenceMatchRegionO15648177 faldo:begin ?templateMotifSequenceMatchBeginO15648178 .
?templateMotifSequenceMatchBeginO15648178 faldo:position ?templateMotifSequenceMatchBeginPositionO15648173 ;
faldo:reference isoform:O15648-1 .
?templateMotifSequenceProfileAlignmentOperationO15648179 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01981183 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO15648MF_01981174 .
?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01981182 .
?targetMotifMatchRegionMatchBeginMF_01981182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01981175 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01981183 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981172, 1, (STRLEN(?templateMotifCigarO15648MF_01981172) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981172, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionO15648173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981174, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981174) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981174, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981174) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_01981175) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981172, 1, (STRLEN(?templateMotifCigarO15648MF_01981172) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981172, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionO15648173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981174, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981174) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981174, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981174) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_01981175) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse51) .
FILTER (REGEX('MG[RH]', SUBSTR(?thisSequenceValue, ?thisPositionOn54, (?thisPositionOn55 - ?thisPositionOn54)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionO15648194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO15648196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO15648MF_01981189 .
?templateMotifSequenceMatchRegionO15648194 faldo:begin ?templateMotifSequenceMatchBeginO15648195 .
?templateMotifSequenceMatchBeginO15648195 faldo:position ?templateMotifSequenceMatchBeginPositionO15648190 ;
faldo:reference isoform:O15648-1 .
?templateMotifSequenceProfileAlignmentOperationO15648196 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01981200 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO15648MF_01981191 .
?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01981199 .
?targetMotifMatchRegionMatchBeginMF_01981199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01981192 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01981200 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981189, 1, (STRLEN(?templateMotifCigarO15648MF_01981189) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981189, CONCAT('^(?:-*[^-]){', STR(((380 - ?templateMotifSequenceMatchBeginPositionO15648190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981191, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981191) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981191, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981191) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_01981192) - 1) AS ?thisPositionOn62) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981189, 1, (STRLEN(?templateMotifCigarO15648MF_01981189) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981189, CONCAT('^(?:-*[^-]){', STR(((383 - ?templateMotifSequenceMatchBeginPositionO15648190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981191, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981191) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981191, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981191) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_01981192) - 1) AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t205) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse59) .
FILTER (REGEX('[HY][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn62, (?thisPositionOn63 - ?thisPositionOn62)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionO15648211 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO15648213 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO15648MF_01981206 .
?templateMotifSequenceMatchRegionO15648211 faldo:begin ?templateMotifSequenceMatchBeginO15648212 .
?templateMotifSequenceMatchBeginO15648212 faldo:position ?templateMotifSequenceMatchBeginPositionO15648207 ;
faldo:reference isoform:O15648-1 .
?templateMotifSequenceProfileAlignmentOperationO15648213 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01981217 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO15648MF_01981208 .
?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01981216 .
?targetMotifMatchRegionMatchBeginMF_01981216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01981209 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01981217 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981206, 1, (STRLEN(?templateMotifCigarO15648MF_01981206) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981206, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionO15648207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981208, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981208) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981208, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981208) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_01981209) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionO15648226 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO15648228 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO15648MF_01981221 .
?templateMotifSequenceMatchRegionO15648226 faldo:begin ?templateMotifSequenceMatchBeginO15648227 .
?templateMotifSequenceMatchBeginO15648227 faldo:position ?templateMotifSequenceMatchBeginPositionO15648222 ;
faldo:reference isoform:O15648-1 .
?templateMotifSequenceProfileAlignmentOperationO15648228 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01981232 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO15648MF_01981223 .
?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01981231 .
?targetMotifMatchRegionMatchBeginMF_01981231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01981224 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01981232 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981221, 1, (STRLEN(?templateMotifCigarO15648MF_01981221) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981221, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionO15648222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981223, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981223) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981223, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981223) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_01981224) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t235) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER (REGEX('[DEN]', SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionO15648241 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO15648243 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO15648MF_01981236 .
?templateMotifSequenceMatchRegionO15648241 faldo:begin ?templateMotifSequenceMatchBeginO15648242 .
?templateMotifSequenceMatchBeginO15648242 faldo:position ?templateMotifSequenceMatchBeginPositionO15648237 ;
faldo:reference isoform:O15648-1 .
?templateMotifSequenceProfileAlignmentOperationO15648243 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01981247 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO15648MF_01981238 .
?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01981246 .
?targetMotifMatchRegionMatchBeginMF_01981246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01981239 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01981247 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO15648MF_01981236, 1, (STRLEN(?templateMotifCigarO15648MF_01981236) - STRLEN(REPLACE(?templateMotifCigarO15648MF_01981236, CONCAT('^(?:-*[^-]){', STR(((325 - ?templateMotifSequenceMatchBeginPositionO15648237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO15648MF_01981238, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981238) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO15648MF_01981238, 1, (STRLEN(?targetMotifMatchCigarO15648MF_01981238) - STRLEN(REPLACE(?targetMotifMatchCigarO15648MF_01981238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_01981239) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs1t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionO15648256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO15648258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO15648MF_01981251 .
?templateMotifSequenceMatchRegionO15648256 faldo:begin ?templateMotifSequenceMatchBeginO15648257 .
?templateMotifSequenceMatchBeginO15648257 faldo:position ?templateMotifSequenceMatchBeginPositionO15648252 ;
faldo:reference isoform:O15648-1 .
?templateMotifSequenceProfileAlignmentOperationO15648258 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01981262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO15648MF_01981253 .
?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01981261 .
?targetMotifMatchRegionMatchBeginMF_01981261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01981254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01981262 edam:has_input signature:MF_01981 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:5653 .
BIND((STRLEN(?thisSequenceValue) - 2) AS ?thisPositionOn89) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn90) .
BIND(?this AS ?pfs2t263) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse88) .
FILTER (REGEX('[AS]K[LV]$', SUBSTR(?thisSequenceValue, ?thisPositionOn89, (?thisPositionOn90 - ?thisPositionOn89)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03186a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:5653 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:5653 .
})) .
BIND(?this AS ?case12) .
}
}
"xsd:string |
