| http://purl.uniprot.org/unirules/MF_03210#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:882508 up:source unirule:MF_03210 .
_:882509 up:source unirule:MF_03210 .
_:882510 up:source unirule:MF_03210 .
_:882511 up:source unirule:MF_03210 .
_:882512 up:source unirule:MF_03210 .
_:882513 up:source unirule:MF_03210 .
_:882514 up:source unirule:MF_03210 .
_:882515 up:source unirule:MF_03210 .
_:882516 up:source unirule:MF_03210 .
_:882517 up:source unirule:MF_03210 .
_:882518 up:source unirule:MF_03210 .
_:882519 up:source unirule:MF_03210 .
_:882520 up:source unirule:MF_03210 .
_:882521 up:source unirule:MF_03210 .
_:882522 up:source unirule:MF_03210 .
_:882523 up:source unirule:MF_03210 .
_:882524 up:source unirule:MF_03210 .
_:882525 up:source unirule:MF_03210 .
_:882526 up:source unirule:MF_03210 .
_:882527 up:source unirule:MF_03210 .
_:882528 up:source unirule:MF_03210 .
_:882529 up:source unirule:MF_03210 .
_:882530 up:source unirule:MF_03210 .
_:882531 up:source unirule:MF_03210 .
_:882532 up:source unirule:MF_03210 .
_:882533 up:source unirule:MF_03210 .
_:882534 up:source unirule:MF_03210 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation3 ;
up:classifiedWith GO:0008863 ,
GO:0042183 ,
keyword:520 ,
keyword:560 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.' .
?case4 up:alternativeName ?name6 ;
up:classifiedWith GO:0005739 ,
keyword:496 ;
up:recommendedName ?name5 .
?name5 up:ecName '1.17.1.9' ;
up:fullName 'Formate dehydrogenase, mitochondrial' ;
up:shortName 'FDH' ;
rdf:type up:Structured_Name .
?name6 up:fullName 'NAD-dependent formate dehydrogenase' ;
rdf:type up:Structured_Name .
?case7 up:alternativeName ?name9 ;
up:classifiedWith GO:0005737 ,
keyword:963 ;
up:recommendedName ?name8 .
?name8 up:ecName '1.17.1.9' ;
up:fullName 'Formate dehydrogenase' ;
up:shortName 'FDH' ;
rdf:type up:Structured_Name .
?name9 up:fullName 'NAD-dependent formate dehydrogenase' ;
rdf:type up:Structured_Name .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:57540 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:57540 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:57540 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf ?molecule36 .
?molecule36 rdfs:label 'substrate' .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf ?molecule44 .
?molecule44 rdfs:label 'substrate' .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:57540 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:57540 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:57540 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:57540 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:57540 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity' .
?pfsb84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity' .
?pfsb90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
_:882535 a rdf:Statement ;
up:attribution _:882508 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:882536 a rdf:Statement ;
up:attribution _:882509 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:882537 a rdf:Statement ;
up:attribution _:882510 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:882538 a rdf:Statement ;
up:attribution _:882511 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:882539 a rdf:Statement ;
up:attribution _:882512 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:882540 a rdf:Statement ;
up:attribution _:882513 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008863 .
_:882541 a rdf:Statement ;
up:attribution _:882514 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042183 .
_:882542 a rdf:Statement ;
up:attribution _:882515 ;
rdf:subject ?case4 ;
rdf:predicate up:recommendedName ;
rdf:object ?name5 .
_:882543 a rdf:Statement ;
up:attribution _:882516 ;
rdf:subject ?case4 ;
rdf:predicate up:alternativeName ;
rdf:object ?name6 .
_:882544 a rdf:Statement ;
up:attribution _:882517 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:882545 a rdf:Statement ;
up:attribution _:882518 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005739 .
_:882546 a rdf:Statement ;
up:attribution _:882519 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:882547 a rdf:Statement ;
up:attribution _:882520 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name9 .
_:882548 a rdf:Statement ;
up:attribution _:882521 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:882549 a rdf:Statement ;
up:attribution _:882522 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:882550 a rdf:Statement ;
up:source unirule:MF_03210 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:882551 a rdf:Statement ;
up:attribution _:882523 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:882552 a rdf:Statement ;
up:source unirule:MF_03210 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:882553 a rdf:Statement ;
up:attribution _:882524 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:882554 a rdf:Statement ;
up:source unirule:MF_03210 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:882555 a rdf:Statement ;
up:attribution _:882525 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:882556 a rdf:Statement ;
up:source unirule:MF_03210 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:882557 a rdf:Statement ;
up:attribution _:882526 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:882558 a rdf:Statement ;
up:source unirule:MF_03210 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:882559 a rdf:Statement ;
up:attribution _:882527 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:882560 a rdf:Statement ;
up:source unirule:MF_03210 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:882561 a rdf:Statement ;
up:attribution _:882528 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:882562 a rdf:Statement ;
up:source unirule:MF_03210 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:882563 a rdf:Statement ;
up:attribution _:882529 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:882564 a rdf:Statement ;
up:source unirule:MF_03210 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:882565 a rdf:Statement ;
up:attribution _:882530 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:882566 a rdf:Statement ;
up:source unirule:MF_03210 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:882567 a rdf:Statement ;
up:attribution _:882531 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:882568 a rdf:Statement ;
up:source unirule:MF_03210 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:882569 a rdf:Statement ;
up:attribution _:882532 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:882570 a rdf:Statement ;
up:source unirule:MF_03210 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:882571 a rdf:Statement ;
up:attribution _:882533 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:882572 a rdf:Statement ;
up:source unirule:MF_03210 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:882573 a rdf:Statement ;
up:attribution _:882534 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03210
#Rule MF_03210 Created by:? on:2015-11-06 Modified by:Edouard de Castro on:2022-11-19
VALUES ?supertaxon94 {taxon:2 taxon:2759}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03210 .
?thisOrganism rdfs:subClassOf+ ?supertaxon94 .
BIND(URI(CONCAT(STR(?this), '#MF_03210a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP33160100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33160MF_0321095 .
?templateMotifSequenceMatchRegionP33160100 faldo:begin ?templateMotifSequenceMatchBeginP33160101 .
?templateMotifSequenceMatchBeginP33160101 faldo:position ?templateMotifSequenceMatchBeginPositionP3316096 ;
faldo:reference isoform:P33160-1 .
?templateMotifSequenceProfileAlignmentOperationP33160102 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33160MF_0321097 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210105 .
?targetMotifMatchRegionMatchBeginMF_03210105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0321098 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03210106 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_0321095, 1, (STRLEN(?templateMotifCigarP33160MF_0321095) - STRLEN(REPLACE(?templateMotifCigarP33160MF_0321095, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP3316096) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_0321097, 1, (STRLEN(?targetMotifMatchCigarP33160MF_0321097) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_0321097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_0321097, 1, (STRLEN(?targetMotifMatchCigarP33160MF_0321097) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_0321097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0321098) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_0321095, 1, (STRLEN(?templateMotifCigarP33160MF_0321095) - STRLEN(REPLACE(?templateMotifCigarP33160MF_0321095, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP3316096) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_0321097, 1, (STRLEN(?targetMotifMatchCigarP33160MF_0321097) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_0321097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_0321097, 1, (STRLEN(?targetMotifMatchCigarP33160MF_0321097) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_0321097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_0321098) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)) = 'RI')) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP33160117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33160MF_03210112 .
?templateMotifSequenceMatchRegionP33160117 faldo:begin ?templateMotifSequenceMatchBeginP33160118 .
?templateMotifSequenceMatchBeginP33160118 faldo:position ?templateMotifSequenceMatchBeginPositionP33160113 ;
faldo:reference isoform:P33160-1 .
?templateMotifSequenceProfileAlignmentOperationP33160119 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33160MF_03210114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210122 .
?targetMotifMatchRegionMatchBeginMF_03210122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03210123 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210112, 1, (STRLEN(?templateMotifCigarP33160MF_03210112) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210112, CONCAT('^(?:-*[^-]){', STR(((257 - ?templateMotifSequenceMatchBeginPositionP33160113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210114, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210114) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210114, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210114) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_03210115) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210112, 1, (STRLEN(?templateMotifCigarP33160MF_03210112) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210112, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP33160113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210114, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210114) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210114, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210114) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_03210115) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('PL[HTY][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP33160134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33160MF_03210129 .
?templateMotifSequenceMatchRegionP33160134 faldo:begin ?templateMotifSequenceMatchBeginP33160135 .
?templateMotifSequenceMatchBeginP33160135 faldo:position ?templateMotifSequenceMatchBeginPositionP33160130 ;
faldo:reference isoform:P33160-1 .
?templateMotifSequenceProfileAlignmentOperationP33160136 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33160MF_03210131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210139 .
?targetMotifMatchRegionMatchBeginMF_03210139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03210140 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210129, 1, (STRLEN(?templateMotifCigarP33160MF_03210129) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210129, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP33160130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210131, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210131) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210131, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210131) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_03210132) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210129, 1, (STRLEN(?templateMotifCigarP33160MF_03210129) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210129, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionP33160130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210131, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210131) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210131, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210131) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_03210132) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]SG', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP33160151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33160MF_03210146 .
?templateMotifSequenceMatchRegionP33160151 faldo:begin ?templateMotifSequenceMatchBeginP33160152 .
?templateMotifSequenceMatchBeginP33160152 faldo:position ?templateMotifSequenceMatchBeginPositionP33160147 ;
faldo:reference isoform:P33160-1 .
?templateMotifSequenceProfileAlignmentOperationP33160153 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210157 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33160MF_03210148 .
?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210156 .
?targetMotifMatchRegionMatchBeginMF_03210156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210149 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03210157 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210146, 1, (STRLEN(?templateMotifCigarP33160MF_03210146) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210146, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionP33160147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210148, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210148) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210148, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210148) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_03210149) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse34) .
FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP33160166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33160MF_03210161 .
?templateMotifSequenceMatchRegionP33160166 faldo:begin ?templateMotifSequenceMatchBeginP33160167 .
?templateMotifSequenceMatchBeginP33160167 faldo:position ?templateMotifSequenceMatchBeginPositionP33160162 ;
faldo:reference isoform:P33160-1 .
?templateMotifSequenceProfileAlignmentOperationP33160168 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33160MF_03210163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210171 .
?targetMotifMatchRegionMatchBeginMF_03210171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03210172 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210161, 1, (STRLEN(?templateMotifCigarP33160MF_03210161) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210161, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP33160162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210163, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210163) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210163, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210163) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_03210164) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionP33160181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33160MF_03210176 .
?templateMotifSequenceMatchRegionP33160181 faldo:begin ?templateMotifSequenceMatchBeginP33160182 .
?templateMotifSequenceMatchBeginP33160182 faldo:position ?templateMotifSequenceMatchBeginPositionP33160177 ;
faldo:reference isoform:P33160-1 .
?templateMotifSequenceProfileAlignmentOperationP33160183 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33160MF_03210178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210186 .
?targetMotifMatchRegionMatchBeginMF_03210186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03210187 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210176, 1, (STRLEN(?templateMotifCigarP33160MF_03210176) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210176, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionP33160177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210178, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210178) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210178, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210178) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_03210179) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP33160196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33160MF_03210191 .
?templateMotifSequenceMatchRegionP33160196 faldo:begin ?templateMotifSequenceMatchBeginP33160197 .
?templateMotifSequenceMatchBeginP33160197 faldo:position ?templateMotifSequenceMatchBeginPositionP33160192 ;
faldo:reference isoform:P33160-1 .
?templateMotifSequenceProfileAlignmentOperationP33160198 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210202 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33160MF_03210193 .
?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210201 .
?targetMotifMatchRegionMatchBeginMF_03210201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210194 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03210202 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210191, 1, (STRLEN(?templateMotifCigarP33160MF_03210191) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210191, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionP33160192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210193, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210193) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210193, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210193) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_03210194) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t205) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionP33160211 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160213 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33160MF_03210206 .
?templateMotifSequenceMatchRegionP33160211 faldo:begin ?templateMotifSequenceMatchBeginP33160212 .
?templateMotifSequenceMatchBeginP33160212 faldo:position ?templateMotifSequenceMatchBeginPositionP33160207 ;
faldo:reference isoform:P33160-1 .
?templateMotifSequenceProfileAlignmentOperationP33160213 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210217 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33160MF_03210208 .
?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210216 .
?targetMotifMatchRegionMatchBeginMF_03210216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210209 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03210217 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210206, 1, (STRLEN(?templateMotifCigarP33160MF_03210206) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210206, CONCAT('^(?:-*[^-]){', STR(((283 - ?templateMotifSequenceMatchBeginPositionP33160207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210208, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210208) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210208, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210208) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_03210209) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER (REGEX('[TN]', SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionP33160226 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160228 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33160MF_03210221 .
?templateMotifSequenceMatchRegionP33160226 faldo:begin ?templateMotifSequenceMatchBeginP33160227 .
?templateMotifSequenceMatchBeginP33160227 faldo:position ?templateMotifSequenceMatchBeginPositionP33160222 ;
faldo:reference isoform:P33160-1 .
?templateMotifSequenceProfileAlignmentOperationP33160228 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210232 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33160MF_03210223 .
?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210231 .
?targetMotifMatchRegionMatchBeginMF_03210231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210224 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03210232 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210221, 1, (STRLEN(?templateMotifCigarP33160MF_03210221) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210221, CONCAT('^(?:-*[^-]){', STR(((309 - ?templateMotifSequenceMatchBeginPositionP33160222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210223, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210223) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210223, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210223) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_03210224) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t235) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionP33160241 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160243 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33160MF_03210236 .
?templateMotifSequenceMatchRegionP33160241 faldo:begin ?templateMotifSequenceMatchBeginP33160242 .
?templateMotifSequenceMatchBeginP33160242 faldo:position ?templateMotifSequenceMatchBeginPositionP33160237 ;
faldo:reference isoform:P33160-1 .
?templateMotifSequenceProfileAlignmentOperationP33160243 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210247 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33160MF_03210238 .
?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210246 .
?targetMotifMatchRegionMatchBeginMF_03210246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210239 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03210247 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210236, 1, (STRLEN(?templateMotifCigarP33160MF_03210236) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210236, CONCAT('^(?:-*[^-]){', STR(((381 - ?templateMotifSequenceMatchBeginPositionP33160237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210238, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210238) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210238, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210238) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_03210239) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionP33160256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33160MF_03210251 .
?templateMotifSequenceMatchRegionP33160256 faldo:begin ?templateMotifSequenceMatchBeginP33160257 .
?templateMotifSequenceMatchBeginP33160257 faldo:position ?templateMotifSequenceMatchBeginPositionP33160252 ;
faldo:reference isoform:P33160-1 .
?templateMotifSequenceProfileAlignmentOperationP33160258 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33160MF_03210253 .
?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210261 .
?targetMotifMatchRegionMatchBeginMF_03210261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03210262 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210251, 1, (STRLEN(?templateMotifCigarP33160MF_03210251) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210251, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionP33160252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210253, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210253) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210253, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210253) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) .
BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_03210254) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t265) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch270 faldo:location ?templateMotifSequenceMatchRegionP33160271 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160273 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33160MF_03210266 .
?templateMotifSequenceMatchRegionP33160271 faldo:begin ?templateMotifSequenceMatchBeginP33160272 .
?templateMotifSequenceMatchBeginP33160272 faldo:position ?templateMotifSequenceMatchBeginPositionP33160267 ;
faldo:reference isoform:P33160-1 .
?templateMotifSequenceProfileAlignmentOperationP33160273 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch274 faldo:location ?targetMotifMatchRegionMatch275 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210277 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33160MF_03210268 .
?targetMotifMatchRegionMatch275 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210276 .
?targetMotifMatchRegionMatchBeginMF_03210276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210269 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03210277 edam:has_input signature:MF_03210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210266, 1, (STRLEN(?templateMotifCigarP33160MF_03210266) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210266, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP33160267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210268, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210268) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210268, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210268) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) .
BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_03210269) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t280) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?case4) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a6')) AS ?name6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33090 .
})) .
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a8')) AS ?name8) .
BIND(URI(CONCAT(STR(?this), '#MF_03210a9')) AS ?name9) .
}
}
"xsd:string |
