| http://purl.uniprot.org/unirules/MF_03218#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:886882 up:source unirule:MF_03218 .
_:886883 up:source unirule:MF_03218 .
_:886884 up:source unirule:MF_03218 .
_:886885 up:source unirule:MF_03218 .
_:886886 up:source unirule:MF_03218 .
_:886887 up:source unirule:MF_03218 .
_:886888 up:source unirule:MF_03218 .
_:886889 up:source unirule:MF_03218 .
_:886890 up:source unirule:MF_03218 .
_:886891 up:source unirule:MF_03218 .
_:886892 up:source unirule:MF_03218 .
_:886893 up:source unirule:MF_03218 .
_:886894 up:source unirule:MF_03218 .
_:886895 up:source unirule:MF_03218 .
_:886896 up:source unirule:MF_03218 .
_:886897 up:source unirule:MF_03218 .
_:886898 up:source unirule:MF_03218 .
_:886899 up:source unirule:MF_03218 .
_:886900 up:source unirule:MF_03218 .
_:886901 up:source unirule:MF_03218 .
_:886902 up:source unirule:MF_03218 .
_:886903 up:source unirule:MF_03218 .
_:886904 up:source unirule:MF_03218 .
_:886905 up:source unirule:MF_03218 .
_:886906 up:source unirule:MF_03218 .
_:886907 up:source unirule:MF_03218 .
_:886908 up:source unirule:MF_03218 .
_:886909 up:source unirule:MF_03218 .
_:886910 up:source unirule:MF_03218 .
_:886911 up:source unirule:MF_03218 .
_:886912 up:source unirule:MF_03218 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0002099 ,
GO:0005737 ,
GO:0008479 ,
keyword:328 ,
keyword:808 ,
keyword:819 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.2.64' ;
up:fullName 'Queuine tRNA-ribosyltransferase catalytic subunit 1' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Guanine insertion enzyme' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'tRNA-guanine transglycosylase' ;
rdf:type up:Structured_Name .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming queuine, allowing a nucleophilic attack on the C1' of the ribose to form the product." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the queuine tRNA-ribosyltransferase family.' .
?case7 up:classifiedWith keyword:479 ,
keyword:862 .
?case8 up:classifiedWith GO:0005741 ,
keyword:1000 ,
keyword:472 ,
keyword:496 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 ,
?annotation30 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29105 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29105 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf ?molecule41 .
?molecule41 rdfs:label 'substrate' .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'RNA binding' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'RNA binding; important for wobble base 34 recognition' .
?pfsb52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf ?molecule73 .
?molecule73 rdfs:label 'substrate' .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf ?molecule81 .
?molecule81 rdfs:label 'substrate' .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf ?molecule89 .
?molecule89 rdfs:label 'substrate' .
_:886913 a rdf:Statement ;
up:attribution _:886882 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:886914 a rdf:Statement ;
up:attribution _:886883 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:886915 a rdf:Statement ;
up:attribution _:886884 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:886916 a rdf:Statement ;
up:attribution _:886885 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:886917 a rdf:Statement ;
up:attribution _:886886 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:886918 a rdf:Statement ;
up:attribution _:886887 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:886919 a rdf:Statement ;
up:attribution _:886888 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:886920 a rdf:Statement ;
up:attribution _:886889 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:886921 a rdf:Statement ;
up:attribution _:886890 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:886922 a rdf:Statement ;
up:attribution _:886891 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:886923 a rdf:Statement ;
up:attribution _:886892 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:886924 a rdf:Statement ;
up:attribution _:886893 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008479 .
_:886925 a rdf:Statement ;
up:attribution _:886894 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002099 .
_:886926 a rdf:Statement ;
up:attribution _:886895 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:886927 a rdf:Statement ;
up:attribution _:886896 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:886928 a rdf:Statement ;
up:attribution _:886897 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:886929 a rdf:Statement ;
up:attribution _:886898 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1000 .
_:886930 a rdf:Statement ;
up:attribution _:886899 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:886931 a rdf:Statement ;
up:attribution _:886900 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005741 .
_:886932 a rdf:Statement ;
up:source unirule:MF_03218 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:886933 a rdf:Statement ;
up:attribution _:886901 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:886934 a rdf:Statement ;
up:source unirule:MF_03218 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:886935 a rdf:Statement ;
up:attribution _:886902 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:886936 a rdf:Statement ;
up:source unirule:MF_03218 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:886937 a rdf:Statement ;
up:attribution _:886903 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:886938 a rdf:Statement ;
up:source unirule:MF_03218 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:886939 a rdf:Statement ;
up:attribution _:886904 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:886940 a rdf:Statement ;
up:source unirule:MF_03218 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:886941 a rdf:Statement ;
up:attribution _:886905 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:886942 a rdf:Statement ;
up:source unirule:MF_03218 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:886943 a rdf:Statement ;
up:attribution _:886906 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:886944 a rdf:Statement ;
up:source unirule:MF_03218 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:886945 a rdf:Statement ;
up:attribution _:886907 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:886946 a rdf:Statement ;
up:source unirule:MF_03218 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:886947 a rdf:Statement ;
up:attribution _:886908 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:886948 a rdf:Statement ;
up:source unirule:MF_03218 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:886949 a rdf:Statement ;
up:attribution _:886909 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:886950 a rdf:Statement ;
up:source unirule:MF_03218 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:886951 a rdf:Statement ;
up:attribution _:886910 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:886952 a rdf:Statement ;
up:source unirule:MF_03218 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:886953 a rdf:Statement ;
up:attribution _:886911 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:886954 a rdf:Statement ;
up:source unirule:MF_03218 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:886955 a rdf:Statement ;
up:attribution _:886912 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03218
#Rule MF_03218 Created by:? on:2016-07-22 Modified by:Catherine Rivoire on:2025-06-13
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00168 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03218a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionP2872097 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2872099 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28720MF_0016892 .
?templateMotifSequenceMatchRegionP2872097 faldo:begin ?templateMotifSequenceMatchBeginP2872098 .
?templateMotifSequenceMatchBeginP2872098 faldo:position ?templateMotifSequenceMatchBeginPositionP2872093 ;
faldo:reference isoform:P28720-1 .
?templateMotifSequenceProfileAlignmentOperationP2872099 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00168103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28720MF_0016894 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00168102 .
?targetMotifMatchRegionMatchBeginMF_00168102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0016895 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00168103 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_0016892, 1, (STRLEN(?templateMotifCigarP28720MF_0016892) - STRLEN(REPLACE(?templateMotifCigarP28720MF_0016892, CONCAT('^(?:-*[^-]){', STR(((318 - ?templateMotifSequenceMatchBeginPositionP2872093) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_0016894, 1, (STRLEN(?targetMotifMatchCigarP28720MF_0016894) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_0016894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_0016894, 1, (STRLEN(?targetMotifMatchCigarP28720MF_0016894) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_0016894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0016895) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_0016892, 1, (STRLEN(?templateMotifCigarP28720MF_0016892) - STRLEN(REPLACE(?templateMotifCigarP28720MF_0016892, CONCAT('^(?:-*[^-]){', STR(((320 - ?templateMotifSequenceMatchBeginPositionP2872093) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_0016894, 1, (STRLEN(?targetMotifMatchCigarP28720MF_0016894) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_0016894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_0016894, 1, (STRLEN(?targetMotifMatchCigarP28720MF_0016894) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_0016894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0016895) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_0016892, 1, (STRLEN(?templateMotifCigarP28720MF_0016892) - STRLEN(REPLACE(?templateMotifCigarP28720MF_0016892, CONCAT('^(?:-*[^-]){', STR(((323 - ?templateMotifSequenceMatchBeginPositionP2872093) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_0016894, 1, (STRLEN(?targetMotifMatchCigarP28720MF_0016894) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_0016894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_0016894, 1, (STRLEN(?targetMotifMatchCigarP28720MF_0016894) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_0016894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_0016895) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_0016892, 1, (STRLEN(?templateMotifCigarP28720MF_0016892) - STRLEN(REPLACE(?templateMotifCigarP28720MF_0016892, CONCAT('^(?:-*[^-]){', STR(((349 - ?templateMotifSequenceMatchBeginPositionP2872093) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_0016894, 1, (STRLEN(?targetMotifMatchCigarP28720MF_0016894) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_0016894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_0016894, 1, (STRLEN(?targetMotifMatchCigarP28720MF_0016894) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_0016894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_0016895) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP28720121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28720123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28720MF_00168116 .
?templateMotifSequenceMatchRegionP28720121 faldo:begin ?templateMotifSequenceMatchBeginP28720122 .
?templateMotifSequenceMatchBeginP28720122 faldo:position ?templateMotifSequenceMatchBeginPositionP28720117 ;
faldo:reference isoform:P28720-1 .
?templateMotifSequenceProfileAlignmentOperationP28720123 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00168127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28720MF_00168118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00168126 .
?targetMotifMatchRegionMatchBeginMF_00168126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00168119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00168127 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_00168116, 1, (STRLEN(?templateMotifCigarP28720MF_00168116) - STRLEN(REPLACE(?templateMotifCigarP28720MF_00168116, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP28720117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_00168118, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168118) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_00168118, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168118) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_00168119) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_00168116, 1, (STRLEN(?templateMotifCigarP28720MF_00168116) - STRLEN(REPLACE(?templateMotifCigarP28720MF_00168116, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionP28720117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_00168118, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168118) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_00168118, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168118) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_00168119) - 1) AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse39) .
FILTER (REGEX('DSGG[FY]', SUBSTR(?thisSequenceValue, ?thisPositionOn42, (?thisPositionOn43 - ?thisPositionOn42)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionP28720138 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28720140 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28720MF_00168133 .
?templateMotifSequenceMatchRegionP28720138 faldo:begin ?templateMotifSequenceMatchBeginP28720139 .
?templateMotifSequenceMatchBeginP28720139 faldo:position ?templateMotifSequenceMatchBeginPositionP28720134 ;
faldo:reference isoform:P28720-1 .
?templateMotifSequenceProfileAlignmentOperationP28720140 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00168144 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28720MF_00168135 .
?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00168143 .
?targetMotifMatchRegionMatchBeginMF_00168143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00168136 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00168144 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_00168133, 1, (STRLEN(?templateMotifCigarP28720MF_00168133) - STRLEN(REPLACE(?templateMotifCigarP28720MF_00168133, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP28720134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_00168135, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168135) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_00168135, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168135) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_00168136) - 1) AS ?thisPositionOn48) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_00168133, 1, (STRLEN(?templateMotifCigarP28720MF_00168133) - STRLEN(REPLACE(?templateMotifCigarP28720MF_00168133, CONCAT('^(?:-*[^-]){', STR(((267 - ?templateMotifSequenceMatchBeginPositionP28720134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_00168135, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168135) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_00168135, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168135) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00168136) - 1) AS ?thisPositionOn49) .
BIND(?this AS ?pfs2t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER (REGEX('G[VIG]G[ARNDCQEGHILKMFPSTWYVBZJUOX]{4)', SUBSTR(?thisSequenceValue, ?thisPositionOn48, (?thisPositionOn49 - ?thisPositionOn48)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP28720155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28720157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28720MF_00168150 .
?templateMotifSequenceMatchRegionP28720155 faldo:begin ?templateMotifSequenceMatchBeginP28720156 .
?templateMotifSequenceMatchBeginP28720156 faldo:position ?templateMotifSequenceMatchBeginPositionP28720151 ;
faldo:reference isoform:P28720-1 .
?templateMotifSequenceProfileAlignmentOperationP28720157 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00168161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28720MF_00168152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00168160 .
?targetMotifMatchRegionMatchBeginMF_00168160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00168153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00168161 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_00168150, 1, (STRLEN(?templateMotifCigarP28720MF_00168150) - STRLEN(REPLACE(?templateMotifCigarP28720MF_00168150, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionP28720151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_00168152, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168152) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_00168152, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168152) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_00168153) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_00168150, 1, (STRLEN(?templateMotifCigarP28720MF_00168150) - STRLEN(REPLACE(?templateMotifCigarP28720MF_00168150, CONCAT('^(?:-*[^-]){', STR(((289 - ?templateMotifSequenceMatchBeginPositionP28720151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_00168152, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168152) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_00168152, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168152) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00168153) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) .
FILTER (REGEX('[TA][RK][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn54, (?thisPositionOn55 - ?thisPositionOn54)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionP28720172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28720174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28720MF_00168167 .
?templateMotifSequenceMatchRegionP28720172 faldo:begin ?templateMotifSequenceMatchBeginP28720173 .
?templateMotifSequenceMatchBeginP28720173 faldo:position ?templateMotifSequenceMatchBeginPositionP28720168 ;
faldo:reference isoform:P28720-1 .
?templateMotifSequenceProfileAlignmentOperationP28720174 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00168178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28720MF_00168169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00168177 .
?targetMotifMatchRegionMatchBeginMF_00168177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00168170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00168178 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_00168167, 1, (STRLEN(?templateMotifCigarP28720MF_00168167) - STRLEN(REPLACE(?templateMotifCigarP28720MF_00168167, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP28720168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_00168169, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168169) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_00168169, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168169) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_00168170) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs2t181) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionP28720187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28720189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28720MF_00168182 .
?templateMotifSequenceMatchRegionP28720187 faldo:begin ?templateMotifSequenceMatchBeginP28720188 .
?templateMotifSequenceMatchBeginP28720188 faldo:position ?templateMotifSequenceMatchBeginPositionP28720183 ;
faldo:reference isoform:P28720-1 .
?templateMotifSequenceProfileAlignmentOperationP28720189 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00168193 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28720MF_00168184 .
?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00168192 .
?targetMotifMatchRegionMatchBeginMF_00168192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00168185 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00168193 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_00168182, 1, (STRLEN(?templateMotifCigarP28720MF_00168182) - STRLEN(REPLACE(?templateMotifCigarP28720MF_00168182, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionP28720183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_00168184, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168184) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_00168184, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168184) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_00168185) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs2t196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionP28720202 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28720204 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28720MF_00168197 .
?templateMotifSequenceMatchRegionP28720202 faldo:begin ?templateMotifSequenceMatchBeginP28720203 .
?templateMotifSequenceMatchBeginP28720203 faldo:position ?templateMotifSequenceMatchBeginPositionP28720198 ;
faldo:reference isoform:P28720-1 .
?templateMotifSequenceProfileAlignmentOperationP28720204 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00168208 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28720MF_00168199 .
?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00168207 .
?targetMotifMatchRegionMatchBeginMF_00168207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00168200 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00168208 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_00168197, 1, (STRLEN(?templateMotifCigarP28720MF_00168197) - STRLEN(REPLACE(?templateMotifCigarP28720MF_00168197, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP28720198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_00168199, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168199) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_00168199, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168199) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_00168200) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs2t211) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionP28720217 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28720219 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28720MF_00168212 .
?templateMotifSequenceMatchRegionP28720217 faldo:begin ?templateMotifSequenceMatchBeginP28720218 .
?templateMotifSequenceMatchBeginP28720218 faldo:position ?templateMotifSequenceMatchBeginPositionP28720213 ;
faldo:reference isoform:P28720-1 .
?templateMotifSequenceProfileAlignmentOperationP28720219 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00168223 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28720MF_00168214 .
?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00168222 .
?targetMotifMatchRegionMatchBeginMF_00168222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00168215 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00168223 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_00168212, 1, (STRLEN(?templateMotifCigarP28720MF_00168212) - STRLEN(REPLACE(?templateMotifCigarP28720MF_00168212, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP28720213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_00168214, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168214) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_00168214, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168214) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_00168215) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs2t226) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionP28720232 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28720234 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28720MF_00168227 .
?templateMotifSequenceMatchRegionP28720232 faldo:begin ?templateMotifSequenceMatchBeginP28720233 .
?templateMotifSequenceMatchBeginP28720233 faldo:position ?templateMotifSequenceMatchBeginPositionP28720228 ;
faldo:reference isoform:P28720-1 .
?templateMotifSequenceProfileAlignmentOperationP28720234 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00168238 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28720MF_00168229 .
?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00168237 .
?targetMotifMatchRegionMatchBeginMF_00168237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00168230 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00168238 edam:has_input signature:MF_00168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28720MF_00168227, 1, (STRLEN(?templateMotifCigarP28720MF_00168227) - STRLEN(REPLACE(?templateMotifCigarP28720MF_00168227, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionP28720228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28720MF_00168229, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168229) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28720MF_00168229, 1, (STRLEN(?targetMotifMatchCigarP28720MF_00168229) - STRLEN(REPLACE(?targetMotifMatchCigarP28720MF_00168229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) .
BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_00168230) - 1) AS ?thisPositionOn90) .
BIND(?thisPositionOn90 AS ?thisPositionOn91) .
BIND(?this AS ?pfs2t241) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03218a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag242) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag242, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7742 .
})) .
BIND(?this AS ?case10) .
}
}
"xsd:string |
