| http://purl.uniprot.org/unirules/MF_04054#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:916185 up:source unirule:MF_04054 .
_:916186 up:source unirule:MF_04054 .
_:916187 up:source unirule:MF_04054 .
_:916188 up:source unirule:MF_04054 .
_:916189 up:source unirule:MF_04054 .
_:916190 up:source unirule:MF_04054 .
_:916191 up:source unirule:MF_04054 .
_:916192 up:source unirule:MF_04054 .
_:916193 up:source unirule:MF_04054 .
_:916194 up:source unirule:MF_04054 .
_:916195 up:source unirule:MF_04054 .
_:916196 up:source unirule:MF_04054 .
_:916197 up:source unirule:MF_04054 .
_:916198 up:source unirule:MF_04054 .
_:916199 up:source unirule:MF_04054 .
_:916200 up:source unirule:MF_04054 .
_:916201 up:source unirule:MF_04054 .
_:916202 up:source unirule:MF_04054 .
_:916203 up:source unirule:MF_04054 .
_:916204 up:source unirule:MF_04054 .
_:916205 up:source unirule:MF_04054 .
_:916206 up:source unirule:MF_04054 .
_:916207 up:source unirule:MF_04054 .
_:916208 up:source unirule:MF_04054 .
_:916209 up:source unirule:MF_04054 .
_:916210 up:source unirule:MF_04054 .
_:916211 up:source unirule:MF_04054 .
_:916212 up:source unirule:MF_04054 .
_:916213 up:source unirule:MF_04054 .
_:916214 up:source unirule:MF_04054 .
_:916215 up:source unirule:MF_04054 .
_:916216 up:source unirule:MF_04054 .
_:916217 up:source unirule:MF_04054 .
_:916218 up:source unirule:MF_04054 .
_:916219 up:source unirule:MF_04054 .
_:916220 up:source unirule:MF_04054 .
_:916221 up:source unirule:MF_04054 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0003677 ,
GO:0006351 ,
GO:0008270 ,
GO:0019028 ,
GO:0039687 ,
GO:0039693 ,
GO:0042025 ,
GO:0045740 ,
keyword:1048 ,
keyword:1194 ,
keyword:235 ,
keyword:238 ,
keyword:244 ,
keyword:479 ,
keyword:597 ,
keyword:862 ,
keyword:945 ;
up:recommendedName ?name0 .
?name0 up:fullName 'DNA-binding protein' ;
up:shortName 'DBP' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Early 2A protein' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Early E2A DNA-binding protein' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'DBP' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Plays a role in the elongation phase of viral strand displacement replication by unwinding the template in an ATP-independent fashion, employing its capacity to form multimers. Also enhances the rate of initiation. Released from template upon second strand synthesis. Assembles in complex with viral pTP, viral pol, host NFIA and host POU2F1/OCT1 on viral origin of replication. Covers the whole ssDNA genome during synthesis. The complementary strand synthesis induces its relese from DNA template. May inhibit cellular transcription mediated by the interaction between host SRCAP and CBP.' .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homomultimerizes on viral ssDNA bound to pTP. Forms a initiation complex with viral polymerase, pTP and hosts NFIA and POU2F1/OCT1. Interacts with host SRCAP.' .
?annotation6 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Accumulates in infected cells' .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Domain_Annotation ;
rdfs:comment 'The C-terminal arm bridges DBP molecules together, thereby creating a chain.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the adenoviridae E2A DNA-binding protein family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Flexible loop' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'C-terminal arm, DBP binding' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:29105 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29105 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:29105 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:29105 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:29105 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:29105 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:29105 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf chebi:29105 .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphotyrosine; by host' .
?pfsb80 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
_:916222 a rdf:Statement ;
up:attribution _:916185 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:916223 a rdf:Statement ;
up:attribution _:916186 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:916224 a rdf:Statement ;
up:attribution _:916187 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:916225 a rdf:Statement ;
up:attribution _:916188 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:916226 a rdf:Statement ;
up:attribution _:916189 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:916227 a rdf:Statement ;
up:attribution _:916190 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:916228 a rdf:Statement ;
up:attribution _:916191 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:916229 a rdf:Statement ;
up:attribution _:916192 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:916230 a rdf:Statement ;
up:attribution _:916193 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:916231 a rdf:Statement ;
up:attribution _:916194 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:916232 a rdf:Statement ;
up:attribution _:916195 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:916233 a rdf:Statement ;
up:attribution _:916196 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:244 .
_:916234 a rdf:Statement ;
up:attribution _:916197 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:916235 a rdf:Statement ;
up:attribution _:916198 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:916236 a rdf:Statement ;
up:attribution _:916199 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:916237 a rdf:Statement ;
up:attribution _:916200 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:916238 a rdf:Statement ;
up:attribution _:916201 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1194 .
_:916239 a rdf:Statement ;
up:attribution _:916202 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:916240 a rdf:Statement ;
up:attribution _:916203 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:916241 a rdf:Statement ;
up:attribution _:916204 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019028 .
_:916242 a rdf:Statement ;
up:attribution _:916205 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:916243 a rdf:Statement ;
up:attribution _:916206 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:916244 a rdf:Statement ;
up:attribution _:916207 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0045740 .
_:916245 a rdf:Statement ;
up:attribution _:916208 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006351 .
_:916246 a rdf:Statement ;
up:attribution _:916209 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039693 .
_:916247 a rdf:Statement ;
up:attribution _:916210 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039687 .
_:916248 a rdf:Statement ;
up:source unirule:MF_04054 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:916249 a rdf:Statement ;
up:attribution _:916211 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:916250 a rdf:Statement ;
up:source unirule:MF_04054 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:916251 a rdf:Statement ;
up:attribution _:916212 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:916252 a rdf:Statement ;
up:source unirule:MF_04054 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:916253 a rdf:Statement ;
up:attribution _:916213 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:916254 a rdf:Statement ;
up:source unirule:MF_04054 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:916255 a rdf:Statement ;
up:attribution _:916214 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:916256 a rdf:Statement ;
up:source unirule:MF_04054 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:916257 a rdf:Statement ;
up:attribution _:916215 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:916258 a rdf:Statement ;
up:source unirule:MF_04054 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:916259 a rdf:Statement ;
up:attribution _:916216 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:916260 a rdf:Statement ;
up:source unirule:MF_04054 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:916261 a rdf:Statement ;
up:attribution _:916217 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:916262 a rdf:Statement ;
up:source unirule:MF_04054 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:916263 a rdf:Statement ;
up:attribution _:916218 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:916264 a rdf:Statement ;
up:source unirule:MF_04054 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:916265 a rdf:Statement ;
up:attribution _:916219 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:916266 a rdf:Statement ;
up:source unirule:MF_04054 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:916267 a rdf:Statement ;
up:attribution _:916220 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:916268 a rdf:Statement ;
up:source unirule:MF_04054 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:916269 a rdf:Statement ;
up:attribution _:916221 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04054
#Rule MF_04054 Created by:? on:2017-03-10 Modified by:Catherine Rivoire on:2025-01-14
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04054 .
?thisOrganism rdfs:subClassOf+ taxon:10508 .
BIND(URI(CONCAT(STR(?this), '#MF_04054a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP0326589 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0326591 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03265MF_0405484 .
?templateMotifSequenceMatchRegionP0326589 faldo:begin ?templateMotifSequenceMatchBeginP0326590 .
?templateMotifSequenceMatchBeginP0326590 faldo:position ?templateMotifSequenceMatchBeginPositionP0326585 ;
faldo:reference isoform:P03265-1 .
?templateMotifSequenceProfileAlignmentOperationP0326591 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0405495 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03265MF_0405486 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0405494 .
?targetMotifMatchRegionMatchBeginMF_0405494 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0405487 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0405495 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03265MF_0405484, 1, (STRLEN(?templateMotifCigarP03265MF_0405484) - STRLEN(REPLACE(?templateMotifCigarP03265MF_0405484, CONCAT('^(?:-*[^-]){', STR(((297 - ?templateMotifSequenceMatchBeginPositionP0326585) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03265MF_0405486, 1, (STRLEN(?targetMotifMatchCigarP03265MF_0405486) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_0405486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03265MF_0405486, 1, (STRLEN(?targetMotifMatchCigarP03265MF_0405486) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_0405486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0405487) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03265MF_0405484, 1, (STRLEN(?templateMotifCigarP03265MF_0405484) - STRLEN(REPLACE(?templateMotifCigarP03265MF_0405484, CONCAT('^(?:-*[^-]){', STR(((331 - ?templateMotifSequenceMatchBeginPositionP0326585) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03265MF_0405486, 1, (STRLEN(?targetMotifMatchCigarP03265MF_0405486) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_0405486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03265MF_0405486, 1, (STRLEN(?targetMotifMatchCigarP03265MF_0405486) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_0405486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0405487) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((BOUND(?thisPositionOn14) && BOUND(?thisPositionOn15))) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP03265106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03265108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03265MF_04054101 .
?templateMotifSequenceMatchRegionP03265106 faldo:begin ?templateMotifSequenceMatchBeginP03265107 .
?templateMotifSequenceMatchBeginP03265107 faldo:position ?templateMotifSequenceMatchBeginPositionP03265102 ;
faldo:reference isoform:P03265-1 .
?templateMotifSequenceProfileAlignmentOperationP03265108 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04054112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03265MF_04054103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04054111 .
?targetMotifMatchRegionMatchBeginMF_04054111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04054104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04054112 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03265MF_04054101, 1, (STRLEN(?templateMotifCigarP03265MF_04054101) - STRLEN(REPLACE(?templateMotifCigarP03265MF_04054101, CONCAT('^(?:-*[^-]){', STR(((513 - ?templateMotifSequenceMatchBeginPositionP03265102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03265MF_04054103, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054103) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03265MF_04054103, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054103) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_04054104) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn20) && BOUND(?thisPositionOn21))) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP03265121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03265123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03265MF_04054116 .
?templateMotifSequenceMatchRegionP03265121 faldo:begin ?templateMotifSequenceMatchBeginP03265122 .
?templateMotifSequenceMatchBeginP03265122 faldo:position ?templateMotifSequenceMatchBeginPositionP03265117 ;
faldo:reference isoform:P03265-1 .
?templateMotifSequenceProfileAlignmentOperationP03265123 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04054127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03265MF_04054118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04054126 .
?targetMotifMatchRegionMatchBeginMF_04054126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04054119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04054127 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03265MF_04054116, 1, (STRLEN(?templateMotifCigarP03265MF_04054116) - STRLEN(REPLACE(?templateMotifCigarP03265MF_04054116, CONCAT('^(?:-*[^-]){', STR(((284 - ?templateMotifSequenceMatchBeginPositionP03265117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03265MF_04054118, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054118) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03265MF_04054118, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054118) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_04054119) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP03265136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03265138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03265MF_04054131 .
?templateMotifSequenceMatchRegionP03265136 faldo:begin ?templateMotifSequenceMatchBeginP03265137 .
?templateMotifSequenceMatchBeginP03265137 faldo:position ?templateMotifSequenceMatchBeginPositionP03265132 ;
faldo:reference isoform:P03265-1 .
?templateMotifSequenceProfileAlignmentOperationP03265138 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04054142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03265MF_04054133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04054141 .
?targetMotifMatchRegionMatchBeginMF_04054141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04054134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04054142 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03265MF_04054131, 1, (STRLEN(?templateMotifCigarP03265MF_04054131) - STRLEN(REPLACE(?templateMotifCigarP03265MF_04054131, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionP03265132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03265MF_04054133, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054133) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03265MF_04054133, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054133) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_04054134) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP03265151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03265153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03265MF_04054146 .
?templateMotifSequenceMatchRegionP03265151 faldo:begin ?templateMotifSequenceMatchBeginP03265152 .
?templateMotifSequenceMatchBeginP03265152 faldo:position ?templateMotifSequenceMatchBeginPositionP03265147 ;
faldo:reference isoform:P03265-1 .
?templateMotifSequenceProfileAlignmentOperationP03265153 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04054157 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03265MF_04054148 .
?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04054156 .
?targetMotifMatchRegionMatchBeginMF_04054156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04054149 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04054157 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03265MF_04054146, 1, (STRLEN(?templateMotifCigarP03265MF_04054146) - STRLEN(REPLACE(?templateMotifCigarP03265MF_04054146, CONCAT('^(?:-*[^-]){', STR(((339 - ?templateMotifSequenceMatchBeginPositionP03265147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03265MF_04054148, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054148) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03265MF_04054148, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054148) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_04054149) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP03265166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03265168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03265MF_04054161 .
?templateMotifSequenceMatchRegionP03265166 faldo:begin ?templateMotifSequenceMatchBeginP03265167 .
?templateMotifSequenceMatchBeginP03265167 faldo:position ?templateMotifSequenceMatchBeginPositionP03265162 ;
faldo:reference isoform:P03265-1 .
?templateMotifSequenceProfileAlignmentOperationP03265168 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04054172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03265MF_04054163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04054171 .
?targetMotifMatchRegionMatchBeginMF_04054171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04054164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04054172 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03265MF_04054161, 1, (STRLEN(?templateMotifCigarP03265MF_04054161) - STRLEN(REPLACE(?templateMotifCigarP03265MF_04054161, CONCAT('^(?:-*[^-]){', STR(((355 - ?templateMotifSequenceMatchBeginPositionP03265162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03265MF_04054163, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054163) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03265MF_04054163, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054163) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_04054164) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionP03265181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03265183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03265MF_04054176 .
?templateMotifSequenceMatchRegionP03265181 faldo:begin ?templateMotifSequenceMatchBeginP03265182 .
?templateMotifSequenceMatchBeginP03265182 faldo:position ?templateMotifSequenceMatchBeginPositionP03265177 ;
faldo:reference isoform:P03265-1 .
?templateMotifSequenceProfileAlignmentOperationP03265183 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04054187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03265MF_04054178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04054186 .
?targetMotifMatchRegionMatchBeginMF_04054186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04054179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04054187 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03265MF_04054176, 1, (STRLEN(?templateMotifCigarP03265MF_04054176) - STRLEN(REPLACE(?templateMotifCigarP03265MF_04054176, CONCAT('^(?:-*[^-]){', STR(((396 - ?templateMotifSequenceMatchBeginPositionP03265177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03265MF_04054178, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054178) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03265MF_04054178, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054178) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_04054179) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP03265196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03265198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03265MF_04054191 .
?templateMotifSequenceMatchRegionP03265196 faldo:begin ?templateMotifSequenceMatchBeginP03265197 .
?templateMotifSequenceMatchBeginP03265197 faldo:position ?templateMotifSequenceMatchBeginPositionP03265192 ;
faldo:reference isoform:P03265-1 .
?templateMotifSequenceProfileAlignmentOperationP03265198 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04054202 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03265MF_04054193 .
?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04054201 .
?targetMotifMatchRegionMatchBeginMF_04054201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04054194 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04054202 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03265MF_04054191, 1, (STRLEN(?templateMotifCigarP03265MF_04054191) - STRLEN(REPLACE(?templateMotifCigarP03265MF_04054191, CONCAT('^(?:-*[^-]){', STR(((398 - ?templateMotifSequenceMatchBeginPositionP03265192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03265MF_04054193, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054193) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03265MF_04054193, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054193) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_04054194) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t205) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionP03265211 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03265213 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03265MF_04054206 .
?templateMotifSequenceMatchRegionP03265211 faldo:begin ?templateMotifSequenceMatchBeginP03265212 .
?templateMotifSequenceMatchBeginP03265212 faldo:position ?templateMotifSequenceMatchBeginPositionP03265207 ;
faldo:reference isoform:P03265-1 .
?templateMotifSequenceProfileAlignmentOperationP03265213 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04054217 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03265MF_04054208 .
?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04054216 .
?targetMotifMatchRegionMatchBeginMF_04054216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04054209 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04054217 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03265MF_04054206, 1, (STRLEN(?templateMotifCigarP03265MF_04054206) - STRLEN(REPLACE(?templateMotifCigarP03265MF_04054206, CONCAT('^(?:-*[^-]){', STR(((450 - ?templateMotifSequenceMatchBeginPositionP03265207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03265MF_04054208, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054208) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03265MF_04054208, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054208) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_04054209) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionP03265226 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03265228 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03265MF_04054221 .
?templateMotifSequenceMatchRegionP03265226 faldo:begin ?templateMotifSequenceMatchBeginP03265227 .
?templateMotifSequenceMatchBeginP03265227 faldo:position ?templateMotifSequenceMatchBeginPositionP03265222 ;
faldo:reference isoform:P03265-1 .
?templateMotifSequenceProfileAlignmentOperationP03265228 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04054232 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03265MF_04054223 .
?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04054231 .
?targetMotifMatchRegionMatchBeginMF_04054231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04054224 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04054232 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03265MF_04054221, 1, (STRLEN(?templateMotifCigarP03265MF_04054221) - STRLEN(REPLACE(?templateMotifCigarP03265MF_04054221, CONCAT('^(?:-*[^-]){', STR(((467 - ?templateMotifSequenceMatchBeginPositionP03265222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03265MF_04054223, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054223) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03265MF_04054223, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054223) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_04054224) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t235) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionP03265241 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03265243 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03265MF_04054236 .
?templateMotifSequenceMatchRegionP03265241 faldo:begin ?templateMotifSequenceMatchBeginP03265242 .
?templateMotifSequenceMatchBeginP03265242 faldo:position ?templateMotifSequenceMatchBeginPositionP03265237 ;
faldo:reference isoform:P03265-1 .
?templateMotifSequenceProfileAlignmentOperationP03265243 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04054247 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03265MF_04054238 .
?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04054246 .
?targetMotifMatchRegionMatchBeginMF_04054246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04054239 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04054247 edam:has_input signature:MF_04054 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03265MF_04054236, 1, (STRLEN(?templateMotifCigarP03265MF_04054236) - STRLEN(REPLACE(?templateMotifCigarP03265MF_04054236, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionP03265237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03265MF_04054238, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054238) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03265MF_04054238, 1, (STRLEN(?targetMotifMatchCigarP03265MF_04054238) - STRLEN(REPLACE(?targetMotifMatchCigarP03265MF_04054238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_04054239) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_04054a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
}
"xsd:string |
