| http://purl.uniprot.org/unirules/MF_04085#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:942554 up:source unirule:MF_04085 .
_:942555 up:source unirule:MF_04085 .
_:942556 up:source unirule:MF_04085 .
_:942557 up:source unirule:MF_04085 .
_:942558 up:source unirule:MF_04085 .
_:942559 up:source unirule:MF_04085 .
_:942560 up:source unirule:MF_04085 .
_:942561 up:source unirule:MF_04085 .
_:942562 up:source unirule:MF_04085 .
_:942563 up:source unirule:MF_04085 .
_:942564 up:source unirule:MF_04085 .
_:942565 up:source unirule:MF_04085 .
_:942566 up:source unirule:MF_04085 .
_:942567 up:source unirule:MF_04085 .
_:942568 up:source unirule:MF_04085 .
_:942569 up:source unirule:MF_04085 .
_:942570 up:source unirule:MF_04085 .
_:942571 up:source unirule:MF_04085 .
_:942572 up:source unirule:MF_04085 .
_:942573 up:source unirule:MF_04085 .
_:942574 up:source unirule:MF_04085 .
_:942575 up:source unirule:MF_04085 .
_:942576 up:source unirule:MF_04085 .
_:942577 up:source unirule:MF_04085 .
_:942578 up:source unirule:MF_04085 .
_:942579 up:source unirule:MF_04085 .
_:942580 up:source unirule:MF_04085 .
_:942581 up:source unirule:MF_04085 .
_:942582 up:source unirule:MF_04085 .
_:942583 up:source unirule:MF_04085 .
_:942584 up:source unirule:MF_04085 .
_:942585 up:source unirule:MF_04085 .
_:942586 up:source unirule:MF_04085 .
_:942587 up:source unirule:MF_04085 .
_:942588 up:source unirule:MF_04085 .
_:942589 up:source unirule:MF_04085 .
_:942590 up:source unirule:MF_04085 .
_:942591 up:source unirule:MF_04085 .
_:942592 up:source unirule:MF_04085 .
_:942593 up:source unirule:MF_04085 .
_:942594 up:source unirule:MF_04085 .
_:942595 up:source unirule:MF_04085 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0003723 ,
GO:0019013 ,
GO:0019029 ,
GO:0030430 ,
GO:0039689 ,
GO:0039696 ,
GO:0039724 ,
GO:0046872 ,
keyword:1035 ,
keyword:1090 ,
keyword:1113 ,
keyword:1139 ,
keyword:1224 ,
keyword:167 ,
keyword:378 ,
keyword:479 ,
keyword:543 ,
keyword:687 ,
keyword:694 ,
keyword:862 ,
keyword:899 ,
keyword:922 ,
keyword:945 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.13.-' ;
up:fullName 'Nucleoprotein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Nucleocapsid protein' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Protein N' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'N' .
?annotation4 a up:Function_Annotation ;
rdfs:comment "Encapsidates the genome, protecting it from nucleases. The encapsidated genomic RNA is termed the nucleocapsid (NC). Serves as template for viral transcription and replication. The increased presence of protein N in host cell does not seem to trigger the switch from transcription to replication as observed in other negative strain RNA viruses. Through the interaction with host IKBKE, strongly inhibits the phosphorylation and nuclear translocation of host IRF3, a protein involved in interferon activation pathway, leading to the inhibition of interferon-beta and IRF3-dependent promoters activation. Encodes also a functional 3'-5' exoribonuclease that degrades preferentially dsRNA substrates and thereby participates in the suppression of interferon induction." .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homomultimerizes to form the nucleocapsid. Binds to viral genomic RNA. Interacts with glycoprotein G2. Interacts with protein Z; this interaction probably directs the encapsidated genome to budding sites. Interacts with protein L; this interaction does not interfere with Z-L interaction. Interacts with host IKBKE (via Protein kinase domain); the interaction inhibits IKBKE kinase activity.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation6li8 up:cellularComponent .
?annotation9 a up:Domain_Annotation ;
rdfs:comment "The N-terminal region is important for the cap-binding activity while the C-terminal region contains the 3'-5' exoribonuclease activity. A CCHE zinc binding site is present in the C-terminal region and may thus contribute to the substrate binding and/or the specificity of the exonuclease activity." .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the arenaviridae nucleocapsid protein family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Binding site for the cap structure m7GTP' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29035 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:29035 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:29105 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:29105 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:29105 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:29105 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:29035 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for exonuclease activity' .
?pfsb68 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
_:942596 a rdf:Statement ;
up:attribution _:942554 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:942597 a rdf:Statement ;
up:attribution _:942555 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:942598 a rdf:Statement ;
up:attribution _:942556 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:942599 a rdf:Statement ;
up:attribution _:942557 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:942600 a rdf:Statement ;
up:attribution _:942558 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:942601 a rdf:Statement ;
up:attribution _:942559 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:942602 a rdf:Statement ;
up:attribution _:942560 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:942603 a rdf:Statement ;
up:attribution _:942561 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:942604 a rdf:Statement ;
up:attribution _:942562 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:942605 a rdf:Statement ;
up:attribution _:942563 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:167 .
_:942606 a rdf:Statement ;
up:attribution _:942564 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1139 .
_:942607 a rdf:Statement ;
up:attribution _:942565 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1035 .
_:942608 a rdf:Statement ;
up:attribution _:942566 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:942609 a rdf:Statement ;
up:attribution _:942567 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:942610 a rdf:Statement ;
up:attribution _:942568 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1224 .
_:942611 a rdf:Statement ;
up:attribution _:942569 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1090 .
_:942612 a rdf:Statement ;
up:attribution _:942570 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1113 .
_:942613 a rdf:Statement ;
up:attribution _:942571 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:922 .
_:942614 a rdf:Statement ;
up:attribution _:942572 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:687 .
_:942615 a rdf:Statement ;
up:attribution _:942573 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:942616 a rdf:Statement ;
up:attribution _:942574 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:899 .
_:942617 a rdf:Statement ;
up:attribution _:942575 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:543 .
_:942618 a rdf:Statement ;
up:attribution _:942576 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:942619 a rdf:Statement ;
up:attribution _:942577 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:942620 a rdf:Statement ;
up:attribution _:942578 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:942621 a rdf:Statement ;
up:attribution _:942579 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019029 .
_:942622 a rdf:Statement ;
up:attribution _:942580 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030430 .
_:942623 a rdf:Statement ;
up:attribution _:942581 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019013 .
_:942624 a rdf:Statement ;
up:attribution _:942582 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:942625 a rdf:Statement ;
up:attribution _:942583 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:942626 a rdf:Statement ;
up:attribution _:942584 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039689 .
_:942627 a rdf:Statement ;
up:attribution _:942585 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039696 .
_:942628 a rdf:Statement ;
up:attribution _:942586 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039724 .
_:942629 a rdf:Statement ;
up:source unirule:MF_04085 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:942630 a rdf:Statement ;
up:attribution _:942587 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:942631 a rdf:Statement ;
up:source unirule:MF_04085 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:942632 a rdf:Statement ;
up:attribution _:942588 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:942633 a rdf:Statement ;
up:source unirule:MF_04085 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:942634 a rdf:Statement ;
up:attribution _:942589 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:942635 a rdf:Statement ;
up:source unirule:MF_04085 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:942636 a rdf:Statement ;
up:attribution _:942590 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:942637 a rdf:Statement ;
up:source unirule:MF_04085 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:942638 a rdf:Statement ;
up:attribution _:942591 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:942639 a rdf:Statement ;
up:source unirule:MF_04085 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:942640 a rdf:Statement ;
up:attribution _:942592 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:942641 a rdf:Statement ;
up:source unirule:MF_04085 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:942642 a rdf:Statement ;
up:attribution _:942593 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:942643 a rdf:Statement ;
up:source unirule:MF_04085 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:942644 a rdf:Statement ;
up:attribution _:942594 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:942645 a rdf:Statement ;
up:source unirule:MF_04085 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:942646 a rdf:Statement ;
up:attribution _:942595 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04085
#Rule MF_04085 Created by:? on:2018-01-15 Modified by:Catherine Rivoire on:2024-11-04
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04085 .
?thisOrganism rdfs:subClassOf+ taxon:11617 .
BIND(URI(CONCAT(STR(?this), '#MF_04085a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionP1369977 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1369979 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13699MF_0408572 .
?templateMotifSequenceMatchRegionP1369977 faldo:begin ?templateMotifSequenceMatchBeginP1369978 .
?templateMotifSequenceMatchBeginP1369978 faldo:position ?templateMotifSequenceMatchBeginPositionP1369973 ;
faldo:reference isoform:P13699-1 .
?templateMotifSequenceProfileAlignmentOperationP1369979 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0408583 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13699MF_0408574 .
?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0408582 .
?targetMotifMatchRegionMatchBeginMF_0408582 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0408575 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0408583 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13699MF_0408572, 1, (STRLEN(?templateMotifCigarP13699MF_0408572) - STRLEN(REPLACE(?templateMotifCigarP13699MF_0408572, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP1369973) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13699MF_0408574, 1, (STRLEN(?targetMotifMatchCigarP13699MF_0408574) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_0408574, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13699MF_0408574, 1, (STRLEN(?targetMotifMatchCigarP13699MF_0408574) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_0408574, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0408575) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13699MF_0408572, 1, (STRLEN(?templateMotifCigarP13699MF_0408572) - STRLEN(REPLACE(?templateMotifCigarP13699MF_0408572, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionP1369973) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13699MF_0408574, 1, (STRLEN(?targetMotifMatchCigarP13699MF_0408574) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_0408574, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13699MF_0408574, 1, (STRLEN(?targetMotifMatchCigarP13699MF_0408574) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_0408574, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0408575) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionP1369994 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1369996 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13699MF_0408589 .
?templateMotifSequenceMatchRegionP1369994 faldo:begin ?templateMotifSequenceMatchBeginP1369995 .
?templateMotifSequenceMatchBeginP1369995 faldo:position ?templateMotifSequenceMatchBeginPositionP1369990 ;
faldo:reference isoform:P13699-1 .
?templateMotifSequenceProfileAlignmentOperationP1369996 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04085100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13699MF_0408591 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0408599 .
?targetMotifMatchRegionMatchBeginMF_0408599 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0408592 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04085100 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13699MF_0408589, 1, (STRLEN(?templateMotifCigarP13699MF_0408589) - STRLEN(REPLACE(?templateMotifCigarP13699MF_0408589, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionP1369990) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13699MF_0408591, 1, (STRLEN(?targetMotifMatchCigarP13699MF_0408591) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_0408591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13699MF_0408591, 1, (STRLEN(?targetMotifMatchCigarP13699MF_0408591) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_0408591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0408592) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionP13699109 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13699111 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13699MF_04085104 .
?templateMotifSequenceMatchRegionP13699109 faldo:begin ?templateMotifSequenceMatchBeginP13699110 .
?templateMotifSequenceMatchBeginP13699110 faldo:position ?templateMotifSequenceMatchBeginPositionP13699105 ;
faldo:reference isoform:P13699-1 .
?templateMotifSequenceProfileAlignmentOperationP13699111 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04085115 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13699MF_04085106 .
?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04085114 .
?targetMotifMatchRegionMatchBeginMF_04085114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04085107 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04085115 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13699MF_04085104, 1, (STRLEN(?templateMotifCigarP13699MF_04085104) - STRLEN(REPLACE(?templateMotifCigarP13699MF_04085104, CONCAT('^(?:-*[^-]){', STR(((391 - ?templateMotifSequenceMatchBeginPositionP13699105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13699MF_04085106, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085106) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13699MF_04085106, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085106) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_04085107) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionP13699124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13699126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13699MF_04085119 .
?templateMotifSequenceMatchRegionP13699124 faldo:begin ?templateMotifSequenceMatchBeginP13699125 .
?templateMotifSequenceMatchBeginP13699125 faldo:position ?templateMotifSequenceMatchBeginPositionP13699120 ;
faldo:reference isoform:P13699-1 .
?templateMotifSequenceProfileAlignmentOperationP13699126 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04085130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13699MF_04085121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04085129 .
?targetMotifMatchRegionMatchBeginMF_04085129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04085122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04085130 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13699MF_04085119, 1, (STRLEN(?templateMotifCigarP13699MF_04085119) - STRLEN(REPLACE(?templateMotifCigarP13699MF_04085119, CONCAT('^(?:-*[^-]){', STR(((399 - ?templateMotifSequenceMatchBeginPositionP13699120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13699MF_04085121, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085121) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13699MF_04085121, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085121) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_04085122) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP13699139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13699141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13699MF_04085134 .
?templateMotifSequenceMatchRegionP13699139 faldo:begin ?templateMotifSequenceMatchBeginP13699140 .
?templateMotifSequenceMatchBeginP13699140 faldo:position ?templateMotifSequenceMatchBeginPositionP13699135 ;
faldo:reference isoform:P13699-1 .
?templateMotifSequenceProfileAlignmentOperationP13699141 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04085145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13699MF_04085136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04085144 .
?targetMotifMatchRegionMatchBeginMF_04085144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04085137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04085145 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13699MF_04085134, 1, (STRLEN(?templateMotifCigarP13699MF_04085134) - STRLEN(REPLACE(?templateMotifCigarP13699MF_04085134, CONCAT('^(?:-*[^-]){', STR(((506 - ?templateMotifSequenceMatchBeginPositionP13699135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13699MF_04085136, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085136) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13699MF_04085136, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085136) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_04085137) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP13699154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13699156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13699MF_04085149 .
?templateMotifSequenceMatchRegionP13699154 faldo:begin ?templateMotifSequenceMatchBeginP13699155 .
?templateMotifSequenceMatchBeginP13699155 faldo:position ?templateMotifSequenceMatchBeginPositionP13699150 ;
faldo:reference isoform:P13699-1 .
?templateMotifSequenceProfileAlignmentOperationP13699156 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04085160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13699MF_04085151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04085159 .
?targetMotifMatchRegionMatchBeginMF_04085159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04085152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04085160 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13699MF_04085149, 1, (STRLEN(?templateMotifCigarP13699MF_04085149) - STRLEN(REPLACE(?templateMotifCigarP13699MF_04085149, CONCAT('^(?:-*[^-]){', STR(((509 - ?templateMotifSequenceMatchBeginPositionP13699150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13699MF_04085151, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085151) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13699MF_04085151, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085151) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_04085152) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP13699169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13699171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13699MF_04085164 .
?templateMotifSequenceMatchRegionP13699169 faldo:begin ?templateMotifSequenceMatchBeginP13699170 .
?templateMotifSequenceMatchBeginP13699170 faldo:position ?templateMotifSequenceMatchBeginPositionP13699165 ;
faldo:reference isoform:P13699-1 .
?templateMotifSequenceProfileAlignmentOperationP13699171 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04085175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13699MF_04085166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04085174 .
?targetMotifMatchRegionMatchBeginMF_04085174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04085167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04085175 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13699MF_04085164, 1, (STRLEN(?templateMotifCigarP13699MF_04085164) - STRLEN(REPLACE(?templateMotifCigarP13699MF_04085164, CONCAT('^(?:-*[^-]){', STR(((529 - ?templateMotifSequenceMatchBeginPositionP13699165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13699MF_04085166, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085166) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13699MF_04085166, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085166) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_04085167) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionP13699184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13699186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13699MF_04085179 .
?templateMotifSequenceMatchRegionP13699184 faldo:begin ?templateMotifSequenceMatchBeginP13699185 .
?templateMotifSequenceMatchBeginP13699185 faldo:position ?templateMotifSequenceMatchBeginPositionP13699180 ;
faldo:reference isoform:P13699-1 .
?templateMotifSequenceProfileAlignmentOperationP13699186 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04085190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13699MF_04085181 .
?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04085189 .
?targetMotifMatchRegionMatchBeginMF_04085189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04085182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04085190 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13699MF_04085179, 1, (STRLEN(?templateMotifCigarP13699MF_04085179) - STRLEN(REPLACE(?templateMotifCigarP13699MF_04085179, CONCAT('^(?:-*[^-]){', STR(((533 - ?templateMotifSequenceMatchBeginPositionP13699180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13699MF_04085181, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085181) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13699MF_04085181, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085181) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) .
BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_04085182) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t193) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch198 faldo:location ?templateMotifSequenceMatchRegionP13699199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13699201 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13699MF_04085194 .
?templateMotifSequenceMatchRegionP13699199 faldo:begin ?templateMotifSequenceMatchBeginP13699200 .
?templateMotifSequenceMatchBeginP13699200 faldo:position ?templateMotifSequenceMatchBeginPositionP13699195 ;
faldo:reference isoform:P13699-1 .
?templateMotifSequenceProfileAlignmentOperationP13699201 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
?targetMotifMatch202 faldo:location ?targetMotifMatchRegionMatch203 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04085205 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13699MF_04085196 .
?targetMotifMatchRegionMatch203 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04085204 .
?targetMotifMatchRegionMatchBeginMF_04085204 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04085197 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04085205 edam:has_input signature:MF_04085 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13699MF_04085194, 1, (STRLEN(?templateMotifCigarP13699MF_04085194) - STRLEN(REPLACE(?templateMotifCigarP13699MF_04085194, CONCAT('^(?:-*[^-]){', STR(((466 - ?templateMotifSequenceMatchBeginPositionP13699195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13699MF_04085196, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085196) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13699MF_04085196, 1, (STRLEN(?targetMotifMatchCigarP13699MF_04085196) - STRLEN(REPLACE(?targetMotifMatchCigarP13699MF_04085196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_04085197) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04085a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
}
"xsd:string |
