| http://purl.uniprot.org/unirules/MF_04086#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:943368 up:source unirule:MF_04086 .
_:943369 up:source unirule:MF_04086 .
_:943370 up:source unirule:MF_04086 .
_:943371 up:source unirule:MF_04086 .
_:943372 up:ecName '3.1.-.-' ;
up:fullName 'cap-snatching endonuclease' ;
rdf:type up:Structured_Name .
_:943373 up:source unirule:MF_04086 .
_:943374 up:source unirule:MF_04086 .
_:943375 up:source unirule:MF_04086 .
_:943376 up:source unirule:MF_04086 .
_:943377 up:source unirule:MF_04086 .
_:943378 up:source unirule:MF_04086 .
_:943379 up:source unirule:MF_04086 .
_:943380 up:source unirule:MF_04086 .
_:943381 up:source unirule:MF_04086 .
_:943382 up:source unirule:MF_04086 .
_:943383 up:source unirule:MF_04086 .
_:943384 up:source unirule:MF_04086 .
_:943385 up:source unirule:MF_04086 .
_:943386 up:source unirule:MF_04086 .
_:943387 up:source unirule:MF_04086 .
_:943388 up:source unirule:MF_04086 .
_:943389 up:source unirule:MF_04086 .
_:943390 up:source unirule:MF_04086 .
_:943391 up:source unirule:MF_04086 .
_:943392 up:source unirule:MF_04086 .
_:943393 up:source unirule:MF_04086 .
_:943394 up:source unirule:MF_04086 .
_:943395 up:source unirule:MF_04086 .
_:943396 up:source unirule:MF_04086 .
_:943397 up:source unirule:MF_04086 .
_:943398 up:source unirule:MF_04086 .
_:943399 up:source unirule:MF_04086 .
_:943400 up:source unirule:MF_04086 .
_:943401 up:source unirule:MF_04086 .
_:943402 up:source unirule:MF_04086 .
_:943403 up:source unirule:MF_04086 .
_:943404 up:source unirule:MF_04086 .
_:943405 up:source unirule:MF_04086 .
_:943406 up:source unirule:MF_04086 .
_:943407 up:source unirule:MF_04086 .
_:943408 up:source unirule:MF_04086 .
_:943409 up:source unirule:MF_04086 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation6 ,
?annotation7 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation15 ,
?annotation16 ,
?annotation17 ;
up:classifiedWith GO:0000166 ,
GO:0003968 ,
GO:0030430 ,
GO:0039689 ,
GO:0039696 ,
GO:0075526 ,
keyword:1035 ,
keyword:1157 ,
keyword:378 ,
keyword:460 ,
keyword:464 ,
keyword:479 ,
keyword:547 ,
keyword:548 ,
keyword:693 ,
keyword:696 ,
keyword:808 ,
keyword:946 ;
up:domain ?namedpart4 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.48' ;
up:fullName 'RNA-directed RNA polymerase L' ;
up:shortName 'Protein L' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Large structural protein' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Replicase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Transcriptase' ;
rdf:type up:Structured_Name .
?namedpart4 up:recommendedName _:943372 .
?gene5 skos:prefLabel 'L' .
?annotation6 a up:Function_Annotation ;
rdfs:comment "RNA-dependent RNA polymerase, which is responsible for the replication and transcription of the viral RNA genome using antigenomic RNA as an intermediate. During transcription, synthesizes subgenomic RNAs and assures their capping by a cap-snatching mechanism, which involves the endonuclease activity cleaving the host capped pre-mRNAs. These short capped RNAs are then used as primers for viral transcription. The 3'-end of subgenomic mRNAs molecules are heterogeneous and not polyadenylated. The replicase function is to direct synthesis of antigenomic and genomic RNA which are encapsidated and non capped. As a consequence of the use of the same enzyme for both transcription and replication, these mechanisms need to be well coordinated. These processes may be regulated by proteins N and Z in a dose-dependent manner. Z protein inhibits the viral polymerase L und thus the viral transcription and RNA synthesis." .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 up:cofactor chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'For endonuclease activity. Binds 2 Mn(2+) ions in the active site. The divalent metal ions are crucial for catalytic activity.' .
?annotation10 up:cofactor chebi:18420 ,
chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'For polymerase activity.' .
?annotation11 a up:Subunit_Annotation ;
rdfs:comment 'Homomultimer; the oligomeric structure is essential for the polymerase activity. Interacts with nucleoprotein N. Interacts with protein Z; this interaction inhibits viral transcription and replication, Z partially blocks the product exit tunnel for the releasing nascent RNA product.' .
?annotation12 a up:Subcellular_Location_Annotation .
?annotation12li13 up:cellularComponent .
?annotation12li14 up:cellularComponent .
?annotation15 a up:Domain_Annotation ;
rdfs:comment 'The N-terminus contains the endonuclease activity (endoN). The central region contains the RdRp activity.' .
?annotation16 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Bunyavirales RNA polymerase family.' .
?annotation17 a up:Annotation ;
rdfs:comment 'Classified as His(-) endonuclease since it does not have a histidine upstream of the active site that coordinates the first cation. His(-) endonucleases display very low activity in vitro, although they are clearly active in vivo.' .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Domain_Extent_Annotation ;
rdfs:comment 'RdRp catalytic' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Endonuclease' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:29035 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:29035 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:29035 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:29035 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:18420 .
_:943410 a rdf:Statement ;
up:attribution _:943368 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:943411 a rdf:Statement ;
up:attribution _:943369 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:943412 a rdf:Statement ;
up:attribution _:943370 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:943413 a rdf:Statement ;
up:attribution _:943371 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:943414 a rdf:Statement ;
up:attribution _:943373 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart4 .
_:943415 a rdf:Statement ;
up:attribution _:943374 ;
rdf:subject ?gene5 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene5 .
_:943416 a rdf:Statement ;
up:attribution _:943375 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:943417 a rdf:Statement ;
up:attribution _:943376 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:943418 a rdf:Statement ;
up:attribution _:943377 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:943419 a rdf:Statement ;
up:attribution _:943378 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:943420 a rdf:Statement ;
up:attribution _:943379 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:943421 a rdf:Statement ;
up:attribution _:943380 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:943422 a rdf:Statement ;
up:attribution _:943381 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:943423 a rdf:Statement ;
up:attribution _:943382 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:943424 a rdf:Statement ;
up:attribution _:943383 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:943425 a rdf:Statement ;
up:attribution _:943384 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1157 .
_:943426 a rdf:Statement ;
up:attribution _:943385 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1035 .
_:943427 a rdf:Statement ;
up:attribution _:943386 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:943428 a rdf:Statement ;
up:attribution _:943387 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:943429 a rdf:Statement ;
up:attribution _:943388 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:943430 a rdf:Statement ;
up:attribution _:943389 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:696 .
_:943431 a rdf:Statement ;
up:attribution _:943390 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:943432 a rdf:Statement ;
up:attribution _:943391 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:693 .
_:943433 a rdf:Statement ;
up:attribution _:943392 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:943434 a rdf:Statement ;
up:attribution _:943393 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:943435 a rdf:Statement ;
up:attribution _:943394 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:943436 a rdf:Statement ;
up:attribution _:943395 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:943437 a rdf:Statement ;
up:attribution _:943396 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030430 .
_:943438 a rdf:Statement ;
up:attribution _:943397 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000166 .
_:943439 a rdf:Statement ;
up:attribution _:943398 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003968 .
_:943440 a rdf:Statement ;
up:attribution _:943399 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0075526 .
_:943441 a rdf:Statement ;
up:attribution _:943400 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039689 .
_:943442 a rdf:Statement ;
up:attribution _:943401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039696 .
_:943443 a rdf:Statement ;
up:source unirule:MF_04086 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:943444 a rdf:Statement ;
up:attribution _:943402 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:943445 a rdf:Statement ;
up:source unirule:MF_04086 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:943446 a rdf:Statement ;
up:attribution _:943403 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:943447 a rdf:Statement ;
up:source unirule:MF_04086 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:943448 a rdf:Statement ;
up:attribution _:943404 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:943449 a rdf:Statement ;
up:source unirule:MF_04086 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:943450 a rdf:Statement ;
up:attribution _:943405 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:943451 a rdf:Statement ;
up:source unirule:MF_04086 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:943452 a rdf:Statement ;
up:attribution _:943406 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:943453 a rdf:Statement ;
up:source unirule:MF_04086 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:943454 a rdf:Statement ;
up:attribution _:943407 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:943455 a rdf:Statement ;
up:source unirule:MF_04086 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:943456 a rdf:Statement ;
up:attribution _:943408 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:943457 a rdf:Statement ;
up:source unirule:MF_04086 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:943458 a rdf:Statement ;
up:attribution _:943409 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04086
#Rule MF_04086 Created by:? on:2018-02-08 Modified by:Catherine Rivoire on:2025-03-21
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04086 .
?thisOrganism rdfs:subClassOf+ taxon:11617 .
BIND(URI(CONCAT(STR(?this), '#MF_04086a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a4')) AS ?namedpart4) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a15')) AS ?annotation15) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a16')) AS ?annotation16) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a17')) AS ?annotation17) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionP1424076 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1424078 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14240MF_0408671 .
?templateMotifSequenceMatchRegionP1424076 faldo:begin ?templateMotifSequenceMatchBeginP1424077 .
?templateMotifSequenceMatchBeginP1424077 faldo:position ?templateMotifSequenceMatchBeginPositionP1424072 ;
faldo:reference isoform:P14240-1 .
?templateMotifSequenceProfileAlignmentOperationP1424078 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0408682 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14240MF_0408673 .
?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0408681 .
?targetMotifMatchRegionMatchBeginMF_0408681 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0408674 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0408682 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14240MF_0408671, 1, (STRLEN(?templateMotifCigarP14240MF_0408671) - STRLEN(REPLACE(?templateMotifCigarP14240MF_0408671, CONCAT('^(?:-*[^-]){', STR(((1166 - ?templateMotifSequenceMatchBeginPositionP1424072) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14240MF_0408673, 1, (STRLEN(?targetMotifMatchCigarP14240MF_0408673) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_0408673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14240MF_0408673, 1, (STRLEN(?targetMotifMatchCigarP14240MF_0408673) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_0408673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0408674) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14240MF_0408671, 1, (STRLEN(?templateMotifCigarP14240MF_0408671) - STRLEN(REPLACE(?templateMotifCigarP14240MF_0408671, CONCAT('^(?:-*[^-]){', STR(((1360 - ?templateMotifSequenceMatchBeginPositionP1424072) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14240MF_0408673, 1, (STRLEN(?targetMotifMatchCigarP14240MF_0408673) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_0408673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14240MF_0408673, 1, (STRLEN(?targetMotifMatchCigarP14240MF_0408673) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_0408673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0408674) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP1424093 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1424095 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14240MF_0408688 .
?templateMotifSequenceMatchRegionP1424093 faldo:begin ?templateMotifSequenceMatchBeginP1424094 .
?templateMotifSequenceMatchBeginP1424094 faldo:position ?templateMotifSequenceMatchBeginPositionP1424089 ;
faldo:reference isoform:P14240-1 .
?templateMotifSequenceProfileAlignmentOperationP1424095 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0408699 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14240MF_0408690 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0408698 .
?targetMotifMatchRegionMatchBeginMF_0408698 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0408691 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0408699 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14240MF_0408688, 1, (STRLEN(?templateMotifCigarP14240MF_0408688) - STRLEN(REPLACE(?templateMotifCigarP14240MF_0408688, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionP1424089) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14240MF_0408690, 1, (STRLEN(?targetMotifMatchCigarP14240MF_0408690) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_0408690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14240MF_0408690, 1, (STRLEN(?targetMotifMatchCigarP14240MF_0408690) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_0408690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0408691) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14240MF_0408688, 1, (STRLEN(?templateMotifCigarP14240MF_0408688) - STRLEN(REPLACE(?templateMotifCigarP14240MF_0408688, CONCAT('^(?:-*[^-]){', STR(((287 - ?templateMotifSequenceMatchBeginPositionP1424089) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14240MF_0408690, 1, (STRLEN(?targetMotifMatchCigarP14240MF_0408690) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_0408690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14240MF_0408690, 1, (STRLEN(?targetMotifMatchCigarP14240MF_0408690) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_0408690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0408691) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((BOUND(?thisPositionOn28) && BOUND(?thisPositionOn29))) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP14240110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14240112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14240MF_04086105 .
?templateMotifSequenceMatchRegionP14240110 faldo:begin ?templateMotifSequenceMatchBeginP14240111 .
?templateMotifSequenceMatchBeginP14240111 faldo:position ?templateMotifSequenceMatchBeginPositionP14240106 ;
faldo:reference isoform:P14240-1 .
?templateMotifSequenceProfileAlignmentOperationP14240112 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04086116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14240MF_04086107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04086115 .
?targetMotifMatchRegionMatchBeginMF_04086115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04086108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04086116 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14240MF_04086105, 1, (STRLEN(?templateMotifCigarP14240MF_04086105) - STRLEN(REPLACE(?templateMotifCigarP14240MF_04086105, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionP14240106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14240MF_04086107, 1, (STRLEN(?targetMotifMatchCigarP14240MF_04086107) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_04086107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14240MF_04086107, 1, (STRLEN(?targetMotifMatchCigarP14240MF_04086107) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_04086107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_04086108) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER (BOUND(?thisPositionOn34)) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP14240125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14240127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14240MF_04086120 .
?templateMotifSequenceMatchRegionP14240125 faldo:begin ?templateMotifSequenceMatchBeginP14240126 .
?templateMotifSequenceMatchBeginP14240126 faldo:position ?templateMotifSequenceMatchBeginPositionP14240121 ;
faldo:reference isoform:P14240-1 .
?templateMotifSequenceProfileAlignmentOperationP14240127 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04086131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14240MF_04086122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04086130 .
?targetMotifMatchRegionMatchBeginMF_04086130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04086123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04086131 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14240MF_04086120, 1, (STRLEN(?templateMotifCigarP14240MF_04086120) - STRLEN(REPLACE(?templateMotifCigarP14240MF_04086120, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP14240121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14240MF_04086122, 1, (STRLEN(?targetMotifMatchCigarP14240MF_04086122) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_04086122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14240MF_04086122, 1, (STRLEN(?targetMotifMatchCigarP14240MF_04086122) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_04086122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_04086123) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER (BOUND(?thisPositionOn41)) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP14240140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14240142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14240MF_04086135 .
?templateMotifSequenceMatchRegionP14240140 faldo:begin ?templateMotifSequenceMatchBeginP14240141 .
?templateMotifSequenceMatchBeginP14240141 faldo:position ?templateMotifSequenceMatchBeginPositionP14240136 ;
faldo:reference isoform:P14240-1 .
?templateMotifSequenceProfileAlignmentOperationP14240142 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04086146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14240MF_04086137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04086145 .
?targetMotifMatchRegionMatchBeginMF_04086145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04086138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04086146 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14240MF_04086135, 1, (STRLEN(?templateMotifCigarP14240MF_04086135) - STRLEN(REPLACE(?templateMotifCigarP14240MF_04086135, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP14240136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14240MF_04086137, 1, (STRLEN(?targetMotifMatchCigarP14240MF_04086137) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_04086137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14240MF_04086137, 1, (STRLEN(?targetMotifMatchCigarP14240MF_04086137) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_04086137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_04086138) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER (BOUND(?thisPositionOn48)) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP14240155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14240157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14240MF_04086150 .
?templateMotifSequenceMatchRegionP14240155 faldo:begin ?templateMotifSequenceMatchBeginP14240156 .
?templateMotifSequenceMatchBeginP14240156 faldo:position ?templateMotifSequenceMatchBeginPositionP14240151 ;
faldo:reference isoform:P14240-1 .
?templateMotifSequenceProfileAlignmentOperationP14240157 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04086161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14240MF_04086152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04086160 .
?targetMotifMatchRegionMatchBeginMF_04086160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04086153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04086161 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14240MF_04086150, 1, (STRLEN(?templateMotifCigarP14240MF_04086150) - STRLEN(REPLACE(?templateMotifCigarP14240MF_04086150, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP14240151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14240MF_04086152, 1, (STRLEN(?targetMotifMatchCigarP14240MF_04086152) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_04086152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14240MF_04086152, 1, (STRLEN(?targetMotifMatchCigarP14240MF_04086152) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_04086152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_04086153) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER (BOUND(?thisPositionOn55)) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP14240170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14240172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14240MF_04086165 .
?templateMotifSequenceMatchRegionP14240170 faldo:begin ?templateMotifSequenceMatchBeginP14240171 .
?templateMotifSequenceMatchBeginP14240171 faldo:position ?templateMotifSequenceMatchBeginPositionP14240166 ;
faldo:reference isoform:P14240-1 .
?templateMotifSequenceProfileAlignmentOperationP14240172 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04086176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14240MF_04086167 .
?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04086175 .
?targetMotifMatchRegionMatchBeginMF_04086175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04086168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04086176 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14240MF_04086165, 1, (STRLEN(?templateMotifCigarP14240MF_04086165) - STRLEN(REPLACE(?templateMotifCigarP14240MF_04086165, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP14240166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14240MF_04086167, 1, (STRLEN(?targetMotifMatchCigarP14240MF_04086167) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_04086167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14240MF_04086167, 1, (STRLEN(?targetMotifMatchCigarP14240MF_04086167) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_04086167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_04086168) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER (BOUND(?thisPositionOn62)) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP14240185 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14240187 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14240MF_04086180 .
?templateMotifSequenceMatchRegionP14240185 faldo:begin ?templateMotifSequenceMatchBeginP14240186 .
?templateMotifSequenceMatchBeginP14240186 faldo:position ?templateMotifSequenceMatchBeginPositionP14240181 ;
faldo:reference isoform:P14240-1 .
?templateMotifSequenceProfileAlignmentOperationP14240187 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04086191 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14240MF_04086182 .
?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04086190 .
?targetMotifMatchRegionMatchBeginMF_04086190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04086183 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04086191 edam:has_input signature:MF_04086 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14240MF_04086180, 1, (STRLEN(?templateMotifCigarP14240MF_04086180) - STRLEN(REPLACE(?templateMotifCigarP14240MF_04086180, CONCAT('^(?:-*[^-]){', STR(((1322 - ?templateMotifSequenceMatchBeginPositionP14240181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14240MF_04086182, 1, (STRLEN(?targetMotifMatchCigarP14240MF_04086182) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_04086182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14240MF_04086182, 1, (STRLEN(?targetMotifMatchCigarP14240MF_04086182) - STRLEN(REPLACE(?targetMotifMatchCigarP14240MF_04086182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_04086183) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER (BOUND(?thisPositionOn69)) .
BIND(URI(CONCAT(STR(?this), '#MF_04086a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
}
"xsd:string |
