| http://purl.uniprot.org/unirules/MF_00219#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:92016 up:source unirule:MF_00219 .
_:92017 up:source unirule:MF_00219 .
_:92018 up:source unirule:MF_00219 .
_:92019 up:source unirule:MF_00219 .
_:92020 up:source unirule:MF_00219 .
_:92021 up:source unirule:MF_00219 .
_:92022 up:source unirule:MF_00219 .
_:92023 up:source unirule:MF_00219 .
_:92024 up:source unirule:MF_00219 .
_:92025 up:source unirule:MF_00219 .
_:92026 up:source unirule:MF_00219 .
_:92027 up:source unirule:MF_00219 .
_:92028 up:source unirule:MF_00219 .
_:92029 up:source unirule:MF_00219 .
_:92030 up:source unirule:MF_00219 .
_:92031 up:source unirule:MF_00219 .
_:92032 up:source unirule:MF_00219 .
_:92033 up:source unirule:MF_00219 .
_:92034 up:source unirule:MF_00219 .
_:92035 up:source unirule:MF_00219 .
_:92036 up:source unirule:MF_00219 .
_:92037 up:source unirule:MF_00219 .
_:92038 up:source unirule:MF_00219 .
_:92039 up:source unirule:MF_00219 .
_:92040 up:source unirule:MF_00219 .
_:92041 up:source unirule:MF_00219 .
_:92042 up:source unirule:MF_00219 .
_:92043 up:source unirule:MF_00219 .
_:92044 up:source unirule:MF_00219 .
_:92045 up:source unirule:MF_00219 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0004151 ,
GO:0008270 ,
GO:0044205 ,
keyword:378 ,
keyword:479 ,
keyword:665 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.2.3' ;
up:fullName 'Dihydroorotase' ;
up:shortName 'DHOase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'pyrC' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 Zn(2+) ions per subunit.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 3/3.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class II DHOase subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf ?molecule14 .
?molecule14 rdfs:label 'substrate' .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Active_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29105 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'via carbamate group' .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:29105 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'via carbamate group' .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:29105 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:29105 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:29105 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:29105 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf ?molecule77 .
?molecule77 rdfs:label 'substrate' .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf ?molecule85 .
?molecule85 rdfs:label 'substrate' .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf ?molecule93 .
?molecule93 rdfs:label 'substrate' .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
up:ligand ?ligand100 ;
rdf:type up:Binding_Site_Annotation .
?pfsb98 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf ?molecule101 .
?molecule101 rdfs:label 'substrate' .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
up:ligand ?ligand108 ;
rdf:type up:Binding_Site_Annotation .
?pfsb106 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?ligand108 rdfs:subClassOf ?molecule109 .
?molecule109 rdfs:label 'substrate' .
?pfs112 up:annotation ?annotation113 .
?annotation113 faldo:begin ?pfsb114 ;
faldo:end ?pfse115 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-carboxylysine' .
?pfsb114 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfse115 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
_:92046 a rdf:Statement ;
up:attribution _:92016 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:92047 a rdf:Statement ;
up:attribution _:92017 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:92048 a rdf:Statement ;
up:attribution _:92018 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:92049 a rdf:Statement ;
up:attribution _:92019 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:92050 a rdf:Statement ;
up:attribution _:92020 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:92051 a rdf:Statement ;
up:attribution _:92021 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:92052 a rdf:Statement ;
up:attribution _:92022 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:92053 a rdf:Statement ;
up:attribution _:92023 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:92054 a rdf:Statement ;
up:attribution _:92024 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:92055 a rdf:Statement ;
up:attribution _:92025 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:92056 a rdf:Statement ;
up:attribution _:92026 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:665 .
_:92057 a rdf:Statement ;
up:attribution _:92027 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:92058 a rdf:Statement ;
up:attribution _:92028 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004151 .
_:92059 a rdf:Statement ;
up:attribution _:92029 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:92060 a rdf:Statement ;
up:attribution _:92030 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044205 .
_:92061 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:92062 a rdf:Statement ;
up:attribution _:92031 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:92063 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:92064 a rdf:Statement ;
up:attribution _:92032 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:92065 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:92066 a rdf:Statement ;
up:attribution _:92033 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:92067 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:92068 a rdf:Statement ;
up:attribution _:92034 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:92069 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:92070 a rdf:Statement ;
up:attribution _:92035 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:92071 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:92072 a rdf:Statement ;
up:attribution _:92036 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:92073 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:92074 a rdf:Statement ;
up:attribution _:92037 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:92075 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:92076 a rdf:Statement ;
up:attribution _:92038 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:92077 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:92078 a rdf:Statement ;
up:attribution _:92039 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:92079 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:92080 a rdf:Statement ;
up:attribution _:92040 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:92081 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:92082 a rdf:Statement ;
up:attribution _:92041 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:92083 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:92084 a rdf:Statement ;
up:attribution _:92042 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:92085 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:92086 a rdf:Statement ;
up:attribution _:92043 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:92087 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:92088 a rdf:Statement ;
up:attribution _:92044 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:92089 a rdf:Statement ;
up:source unirule:MF_00219 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:92090 a rdf:Statement ;
up:attribution _:92045 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00219
#Rule MF_00219 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00219 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00219a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP05020123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219118 .
?templateMotifSequenceMatchRegionP05020123 faldo:begin ?templateMotifSequenceMatchBeginP05020124 .
?templateMotifSequenceMatchBeginP05020124 faldo:position ?templateMotifSequenceMatchBeginPositionP05020119 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020125 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219128 .
?targetMotifMatchRegionMatchBeginMF_00219128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219129 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219118, 1, (STRLEN(?templateMotifCigarP05020MF_00219118) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219118, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP05020119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219120, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219120) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219120, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219120) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_00219121) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219118, 1, (STRLEN(?templateMotifCigarP05020MF_00219118) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219118, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP05020119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219120, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219120) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219120, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219120) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_00219121) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse12) .
FILTER (REGEX('H[LFV]R', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP05020140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219135 .
?templateMotifSequenceMatchRegionP05020140 faldo:begin ?templateMotifSequenceMatchBeginP05020141 .
?templateMotifSequenceMatchBeginP05020141 faldo:position ?templateMotifSequenceMatchBeginPositionP05020136 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020142 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219145 .
?targetMotifMatchRegionMatchBeginMF_00219145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219146 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219135, 1, (STRLEN(?templateMotifCigarP05020MF_00219135) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219135, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP05020136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219137, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219137) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219137, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219137) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00219138) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP05020155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219150 .
?templateMotifSequenceMatchRegionP05020155 faldo:begin ?templateMotifSequenceMatchBeginP05020156 .
?templateMotifSequenceMatchBeginP05020156 faldo:position ?templateMotifSequenceMatchBeginPositionP05020151 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020157 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219160 .
?targetMotifMatchRegionMatchBeginMF_00219160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219161 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219150, 1, (STRLEN(?templateMotifCigarP05020MF_00219150) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219150, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP05020151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219152, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219152) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219152, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219152) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_00219153) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP05020170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219165 .
?templateMotifSequenceMatchRegionP05020170 faldo:begin ?templateMotifSequenceMatchBeginP05020171 .
?templateMotifSequenceMatchBeginP05020171 faldo:position ?templateMotifSequenceMatchBeginPositionP05020166 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020172 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219167 .
?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219175 .
?targetMotifMatchRegionMatchBeginMF_00219175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219176 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219165, 1, (STRLEN(?templateMotifCigarP05020MF_00219165) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219165, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP05020166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219167, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219167) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219167, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219167) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_00219168) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP05020185 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020187 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219180 .
?templateMotifSequenceMatchRegionP05020185 faldo:begin ?templateMotifSequenceMatchBeginP05020186 .
?templateMotifSequenceMatchBeginP05020186 faldo:position ?templateMotifSequenceMatchBeginPositionP05020181 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020187 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219191 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219182 .
?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219190 .
?targetMotifMatchRegionMatchBeginMF_00219190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219183 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219191 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219180, 1, (STRLEN(?templateMotifCigarP05020MF_00219180) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219180, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP05020181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219182, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219182) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219182, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219182) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_00219183) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP05020200 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020202 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219195 .
?templateMotifSequenceMatchRegionP05020200 faldo:begin ?templateMotifSequenceMatchBeginP05020201 .
?templateMotifSequenceMatchBeginP05020201 faldo:position ?templateMotifSequenceMatchBeginPositionP05020196 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020202 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219206 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219197 .
?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219205 .
?targetMotifMatchRegionMatchBeginMF_00219205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219198 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219206 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219195, 1, (STRLEN(?templateMotifCigarP05020MF_00219195) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219195, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP05020196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219197, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219197) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219197, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219197) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_00219198) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionP05020215 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020217 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219210 .
?templateMotifSequenceMatchRegionP05020215 faldo:begin ?templateMotifSequenceMatchBeginP05020216 .
?templateMotifSequenceMatchBeginP05020216 faldo:position ?templateMotifSequenceMatchBeginPositionP05020211 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020217 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219221 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219212 .
?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219220 .
?targetMotifMatchRegionMatchBeginMF_00219220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219213 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219221 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219210, 1, (STRLEN(?templateMotifCigarP05020MF_00219210) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219210, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP05020211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219212, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219212) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219212, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219212) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) .
BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_00219213) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t224) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionP05020230 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020232 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219225 .
?templateMotifSequenceMatchRegionP05020230 faldo:begin ?templateMotifSequenceMatchBeginP05020231 .
?templateMotifSequenceMatchBeginP05020231 faldo:position ?templateMotifSequenceMatchBeginPositionP05020226 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020232 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219236 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219227 .
?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219235 .
?targetMotifMatchRegionMatchBeginMF_00219235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219228 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219236 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219225, 1, (STRLEN(?templateMotifCigarP05020MF_00219225) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219225, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionP05020226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219227, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219227) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219227, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219227) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) .
BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_00219228) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t239) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionP05020245 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020247 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219240 .
?templateMotifSequenceMatchRegionP05020245 faldo:begin ?templateMotifSequenceMatchBeginP05020246 .
?templateMotifSequenceMatchBeginP05020246 faldo:position ?templateMotifSequenceMatchBeginPositionP05020241 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020247 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219251 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219242 .
?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219250 .
?targetMotifMatchRegionMatchBeginMF_00219250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219243 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219251 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219240, 1, (STRLEN(?templateMotifCigarP05020MF_00219240) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219240, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP05020241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219242, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219242) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219242, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219242) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) .
BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_00219243) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t254) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionP05020260 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020262 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219255 .
?templateMotifSequenceMatchRegionP05020260 faldo:begin ?templateMotifSequenceMatchBeginP05020261 .
?templateMotifSequenceMatchBeginP05020261 faldo:position ?templateMotifSequenceMatchBeginPositionP05020256 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020262 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219266 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219257 .
?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219265 .
?targetMotifMatchRegionMatchBeginMF_00219265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219258 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219266 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219255, 1, (STRLEN(?templateMotifCigarP05020MF_00219255) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219255, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP05020256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219257, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219257) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219257, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219257) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) .
BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_00219258) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t269) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionP05020275 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020277 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219270 .
?templateMotifSequenceMatchRegionP05020275 faldo:begin ?templateMotifSequenceMatchBeginP05020276 .
?templateMotifSequenceMatchBeginP05020276 faldo:position ?templateMotifSequenceMatchBeginPositionP05020271 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020277 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219281 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219272 .
?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219280 .
?targetMotifMatchRegionMatchBeginMF_00219280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219273 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219281 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219270, 1, (STRLEN(?templateMotifCigarP05020MF_00219270) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219270, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP05020271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219272, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219272) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219272, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219272) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) .
BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_00219273) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t284) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP05020290 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020292 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219285 .
?templateMotifSequenceMatchRegionP05020290 faldo:begin ?templateMotifSequenceMatchBeginP05020291 .
?templateMotifSequenceMatchBeginP05020291 faldo:position ?templateMotifSequenceMatchBeginPositionP05020286 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020292 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219296 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219287 .
?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219295 .
?targetMotifMatchRegionMatchBeginMF_00219295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219288 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219296 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219285, 1, (STRLEN(?templateMotifCigarP05020MF_00219285) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219285, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionP05020286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219287, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219287) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219287, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219287) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) .
BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_00219288) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs1t299) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'L')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch304 faldo:location ?templateMotifSequenceMatchRegionP05020305 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020307 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219300 .
?templateMotifSequenceMatchRegionP05020305 faldo:begin ?templateMotifSequenceMatchBeginP05020306 .
?templateMotifSequenceMatchBeginP05020306 faldo:position ?templateMotifSequenceMatchBeginPositionP05020301 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020307 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch308 faldo:location ?targetMotifMatchRegionMatch309 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219311 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219302 .
?targetMotifMatchRegionMatch309 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219310 .
?targetMotifMatchRegionMatchBeginMF_00219310 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219303 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219311 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219300, 1, (STRLEN(?templateMotifCigarP05020MF_00219300) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219300, CONCAT('^(?:-*[^-]){', STR(((255 - ?templateMotifSequenceMatchBeginPositionP05020301) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219302, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219302) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219302, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219302) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) .
BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_00219303) - 1) AS ?thisPositionOn102) .
BIND(?thisPositionOn102 AS ?thisPositionOn103) .
BIND(?this AS ?pfs1t314) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse99) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionP05020320 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020322 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219315 .
?templateMotifSequenceMatchRegionP05020320 faldo:begin ?templateMotifSequenceMatchBeginP05020321 .
?templateMotifSequenceMatchBeginP05020321 faldo:position ?templateMotifSequenceMatchBeginPositionP05020316 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020322 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219326 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219317 .
?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219325 .
?targetMotifMatchRegionMatchBeginMF_00219325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219318 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219326 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219315, 1, (STRLEN(?templateMotifCigarP05020MF_00219315) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219315, CONCAT('^(?:-*[^-]){', STR(((267 - ?templateMotifSequenceMatchBeginPositionP05020316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219317, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219317) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219317, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219317) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_00219318) - 1) AS ?thisPositionOn110) .
BIND(?thisPositionOn110 AS ?thisPositionOn111) .
BIND(?this AS ?pfs1t329) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse107) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP05020335 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05020337 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05020MF_00219330 .
?templateMotifSequenceMatchRegionP05020335 faldo:begin ?templateMotifSequenceMatchBeginP05020336 .
?templateMotifSequenceMatchBeginP05020336 faldo:position ?templateMotifSequenceMatchBeginPositionP05020331 ;
faldo:reference isoform:P05020-1 .
?templateMotifSequenceProfileAlignmentOperationP05020337 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00219341 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05020MF_00219332 .
?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00219340 .
?targetMotifMatchRegionMatchBeginMF_00219340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00219333 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00219341 edam:has_input signature:MF_00219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05020MF_00219330, 1, (STRLEN(?templateMotifCigarP05020MF_00219330) - STRLEN(REPLACE(?templateMotifCigarP05020MF_00219330, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP05020331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05020MF_00219332, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219332) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05020MF_00219332, 1, (STRLEN(?targetMotifMatchCigarP05020MF_00219332) - STRLEN(REPLACE(?targetMotifMatchCigarP05020MF_00219332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) .
BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_00219333) - 1) AS ?thisPositionOn116) .
BIND(?thisPositionOn116 AS ?thisPositionOn117) .
BIND(?this AS ?pfs1t344) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse115) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn116, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00219a113')) AS ?annotation113) .
BIND(?this AS ?pfs112) .
}
}
"xsd:string |
