| http://purl.uniprot.org/unirules/MF_00624#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:240204 up:source unirule:MF_00624 .
_:240205 up:source unirule:MF_00624 .
_:240206 up:source unirule:MF_00624 .
_:240207 up:source unirule:MF_00624 .
_:240208 up:source unirule:MF_00624 .
_:240209 up:source unirule:MF_00624 .
_:240210 up:source unirule:MF_00624 .
_:240211 up:source unirule:MF_00624 .
_:240212 up:source unirule:MF_00624 .
_:240213 up:source unirule:MF_00624 .
_:240214 up:source unirule:MF_00624 .
_:240215 up:source unirule:MF_00624 .
_:240216 up:source unirule:MF_00624 .
_:240217 up:source unirule:MF_00624 .
_:240218 up:source unirule:MF_00624 .
_:240219 up:source unirule:MF_00624 .
_:240220 up:source unirule:MF_00624 .
_:240221 up:source unirule:MF_00624 .
_:240222 up:source unirule:MF_00624 .
_:240223 up:source unirule:MF_00624 .
_:240224 up:source unirule:MF_00624 .
_:240225 up:source unirule:MF_00624 .
_:240226 up:source unirule:MF_00624 .
_:240227 up:source unirule:MF_00624 .
_:240228 up:source unirule:MF_00624 .
_:240229 up:source unirule:MF_00624 .
_:240230 up:source unirule:MF_00624 .
_:240231 up:source unirule:MF_00624 .
_:240232 up:source unirule:MF_00624 .
_:240233 up:source unirule:MF_00624 .
_:240234 up:source unirule:MF_00624 .
_:240235 up:source unirule:MF_00624 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0005978 ,
GO:0008878 ,
keyword:119 ,
keyword:320 ,
keyword:321 ,
keyword:547 ,
keyword:548 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.27' ;
up:fullName 'Glucose-1-phosphate adenylyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'ADP-glucose pyrophosphorylase' ;
up:shortName 'ADPGlc PPase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'ADP-glucose synthase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'glgC' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Glycan biosynthesis; glycogen biosynthesis.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.' .
?case9 up:classifiedWith keyword:21 .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:58601 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:58601 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:58601 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:58601 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Could play a key role in the communication between the regulatory and the substrate sites' .
?pfsb41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Could play a key role in the communication between the regulatory and the substrate sites' .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:32966 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:32966 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:32966 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:456215 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:456215 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:456215 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:456215 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:456215 .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf chebi:456215 .
_:240236 a rdf:Statement ;
up:attribution _:240204 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:240237 a rdf:Statement ;
up:attribution _:240205 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:240238 a rdf:Statement ;
up:attribution _:240206 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:240239 a rdf:Statement ;
up:attribution _:240207 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:240240 a rdf:Statement ;
up:attribution _:240208 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:240241 a rdf:Statement ;
up:attribution _:240209 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:240242 a rdf:Statement ;
up:attribution _:240210 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:240243 a rdf:Statement ;
up:attribution _:240211 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:240244 a rdf:Statement ;
up:attribution _:240212 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:240245 a rdf:Statement ;
up:attribution _:240213 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:320 .
_:240246 a rdf:Statement ;
up:attribution _:240214 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:321 .
_:240247 a rdf:Statement ;
up:attribution _:240215 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:240248 a rdf:Statement ;
up:attribution _:240216 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:240249 a rdf:Statement ;
up:attribution _:240217 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:240250 a rdf:Statement ;
up:attribution _:240218 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008878 .
_:240251 a rdf:Statement ;
up:attribution _:240219 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005978 .
_:240252 a rdf:Statement ;
up:attribution _:240220 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:21 .
_:240253 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:240254 a rdf:Statement ;
up:attribution _:240221 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:240255 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:240256 a rdf:Statement ;
up:attribution _:240222 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:240257 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:240258 a rdf:Statement ;
up:attribution _:240223 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:240259 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:240260 a rdf:Statement ;
up:attribution _:240224 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:240261 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:240262 a rdf:Statement ;
up:attribution _:240225 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:240263 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:240264 a rdf:Statement ;
up:attribution _:240226 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:240265 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:240266 a rdf:Statement ;
up:attribution _:240227 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:240267 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:240268 a rdf:Statement ;
up:attribution _:240228 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:240269 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:240270 a rdf:Statement ;
up:attribution _:240229 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:240271 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:240272 a rdf:Statement ;
up:attribution _:240230 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:240273 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:240274 a rdf:Statement ;
up:attribution _:240231 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:240275 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:240276 a rdf:Statement ;
up:attribution _:240232 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:240277 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:240278 a rdf:Statement ;
up:attribution _:240233 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:240279 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:240280 a rdf:Statement ;
up:attribution _:240234 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:240281 a rdf:Statement ;
up:source unirule:MF_00624 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:240282 a rdf:Statement ;
up:attribution _:240235 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00624
#Rule MF_00624 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00624 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00624a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP0A6V1119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624114 .
?templateMotifSequenceMatchRegionP0A6V1119 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1120 .
?templateMotifSequenceMatchBeginP0A6V1120 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1115 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1121 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624124 .
?targetMotifMatchRegionMatchBeginMF_00624124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624125 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624114, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624114) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624114, CONCAT('^(?:-*[^-]){', STR(((194 - ?templateMotifSequenceMatchBeginPositionP0A6V1115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624116, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624116) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624116, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624116) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_00624117) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624114, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624114) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624114, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionP0A6V1115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624116, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624116) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624116, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624116) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_00624117) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)) = 'EK')) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP0A6V1136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624131 .
?templateMotifSequenceMatchRegionP0A6V1136 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1137 .
?templateMotifSequenceMatchBeginP0A6V1137 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1132 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1138 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624141 .
?targetMotifMatchRegionMatchBeginMF_00624141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624142 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624131, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624131) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624131, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP0A6V1132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624133, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624133) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624133, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624133) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_00624134) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP0A6V1151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624146 .
?templateMotifSequenceMatchRegionP0A6V1151 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1152 .
?templateMotifSequenceMatchBeginP0A6V1152 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1147 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1153 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624157 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624148 .
?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624156 .
?targetMotifMatchRegionMatchBeginMF_00624156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624149 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624157 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624146, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624146) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624146, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP0A6V1147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624148, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624148) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624148, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624148) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_00624149) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP0A6V1166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624161 .
?templateMotifSequenceMatchRegionP0A6V1166 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1167 .
?templateMotifSequenceMatchBeginP0A6V1167 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1162 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1168 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624171 .
?targetMotifMatchRegionMatchBeginMF_00624171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624172 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624161, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624161) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624161, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP0A6V1162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624163, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624163) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624163, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624163) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_00624164) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionP0A6V1181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624176 .
?templateMotifSequenceMatchRegionP0A6V1181 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1182 .
?templateMotifSequenceMatchBeginP0A6V1182 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1177 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1183 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624186 .
?targetMotifMatchRegionMatchBeginMF_00624186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624187 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624176, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624176) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624176, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP0A6V1177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624178, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624178) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624178, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624178) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_00624179) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP0A6V1196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624191 .
?templateMotifSequenceMatchRegionP0A6V1196 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1197 .
?templateMotifSequenceMatchBeginP0A6V1197 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1192 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1198 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624202 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624193 .
?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624201 .
?targetMotifMatchRegionMatchBeginMF_00624201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624194 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624202 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624191, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624191) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624191, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP0A6V1192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624193, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624193) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624193, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624193) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_00624194) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t205) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER (REGEX('[WF]', SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionP0A6V1211 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1213 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624206 .
?templateMotifSequenceMatchRegionP0A6V1211 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1212 .
?templateMotifSequenceMatchBeginP0A6V1212 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1207 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1213 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624217 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624208 .
?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624216 .
?targetMotifMatchRegionMatchBeginMF_00624216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624209 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624217 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624206, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624206) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624206, CONCAT('^(?:-*[^-]){', STR(((419 - ?templateMotifSequenceMatchBeginPositionP0A6V1207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624208, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624208) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624208, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624208) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_00624209) - 1) AS ?thisPositionOn56) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624206, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624206) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624206, CONCAT('^(?:-*[^-]){', STR(((423 - ?templateMotifSequenceMatchBeginPositionP0A6V1207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624208, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624208) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624208, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624208) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_00624209) - 1) AS ?thisPositionOn57) .
BIND(?this AS ?pfs2t222) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER (REGEX('R[ED][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn56, (?thisPositionOn57 - ?thisPositionOn56)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch227 faldo:location ?templateMotifSequenceMatchRegionP0A6V1228 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1230 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624223 .
?templateMotifSequenceMatchRegionP0A6V1228 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1229 .
?templateMotifSequenceMatchBeginP0A6V1229 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1224 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1230 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch231 faldo:location ?targetMotifMatchRegionMatch232 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624234 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624225 .
?targetMotifMatchRegionMatch232 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624233 .
?targetMotifMatchRegionMatchBeginMF_00624233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624226 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624234 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624223, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624223) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624223, CONCAT('^(?:-*[^-]){', STR(((429 - ?templateMotifSequenceMatchBeginPositionP0A6V1224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624225, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624225) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624225, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624225) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) .
BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_00624226) - 1) AS ?thisPositionOn63) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624223, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624223) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624223, CONCAT('^(?:-*[^-]){', STR(((431 - ?templateMotifSequenceMatchBeginPositionP0A6V1224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624225, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624225) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624225, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624225) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) .
BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_00624226) - 1) AS ?thisPositionOn64) .
BIND(?this AS ?pfs2t239) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, (?thisPositionOn64 - ?thisPositionOn63)) = 'QER')) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionP0A6V1245 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1247 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624240 .
?templateMotifSequenceMatchRegionP0A6V1245 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1246 .
?templateMotifSequenceMatchBeginP0A6V1246 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1241 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1247 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624251 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624242 .
?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624250 .
?targetMotifMatchRegionMatchBeginMF_00624250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624243 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624251 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624240, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624240) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624240, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP0A6V1241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624242, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624242) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624242, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624242) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) .
BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_00624243) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs2t254) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionP0A6V1260 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1262 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624255 .
?templateMotifSequenceMatchRegionP0A6V1260 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1261 .
?templateMotifSequenceMatchBeginP0A6V1261 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1256 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1262 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624266 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624257 .
?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624265 .
?targetMotifMatchRegionMatchBeginMF_00624265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624258 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624266 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624255, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624255) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624255, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP0A6V1256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624257, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624257) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624257, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624257) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) .
BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_00624258) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs2t269) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionP0A6V1275 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1277 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624270 .
?templateMotifSequenceMatchRegionP0A6V1275 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1276 .
?templateMotifSequenceMatchBeginP0A6V1276 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1271 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1277 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624281 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624272 .
?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624280 .
?targetMotifMatchRegionMatchBeginMF_00624280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624273 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624281 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624270, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624270) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624270, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP0A6V1271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624272, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624272) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624272, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624272) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) .
BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_00624273) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs2t284) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP0A6V1290 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1292 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624285 .
?templateMotifSequenceMatchRegionP0A6V1290 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1291 .
?templateMotifSequenceMatchBeginP0A6V1291 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1286 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1292 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624296 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624287 .
?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624295 .
?targetMotifMatchRegionMatchBeginMF_00624295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624288 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624296 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624285, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624285) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624285, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionP0A6V1286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624287, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624287) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624287, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624287) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) .
BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_00624288) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs2t299) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch304 faldo:location ?templateMotifSequenceMatchRegionP0A6V1305 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1307 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624300 .
?templateMotifSequenceMatchRegionP0A6V1305 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1306 .
?templateMotifSequenceMatchBeginP0A6V1306 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1301 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1307 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch308 faldo:location ?targetMotifMatchRegionMatch309 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624311 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624302 .
?targetMotifMatchRegionMatch309 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624310 .
?targetMotifMatchRegionMatchBeginMF_00624310 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624303 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624311 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624300, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624300) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624300, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP0A6V1301) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624302, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624302) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624302, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624302) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) .
BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_00624303) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs2t314) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionP0A6V1320 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1322 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624315 .
?templateMotifSequenceMatchRegionP0A6V1320 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1321 .
?templateMotifSequenceMatchBeginP0A6V1321 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1316 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1322 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624326 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624317 .
?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624325 .
?targetMotifMatchRegionMatchBeginMF_00624325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624318 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624326 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624315, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624315) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624315, CONCAT('^(?:-*[^-]){', STR(((370 - ?templateMotifSequenceMatchBeginPositionP0A6V1316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624317, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624317) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624317, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624317) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_00624318) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs2t329) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP0A6V1335 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6V1337 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6V1MF_00624330 .
?templateMotifSequenceMatchRegionP0A6V1335 faldo:begin ?templateMotifSequenceMatchBeginP0A6V1336 .
?templateMotifSequenceMatchBeginP0A6V1336 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6V1331 ;
faldo:reference isoform:P0A6V1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6V1337 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00624341 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6V1MF_00624332 .
?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00624340 .
?targetMotifMatchRegionMatchBeginMF_00624340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00624333 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00624341 edam:has_input signature:MF_00624 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6V1MF_00624330, 1, (STRLEN(?templateMotifCigarP0A6V1MF_00624330) - STRLEN(REPLACE(?templateMotifCigarP0A6V1MF_00624330, CONCAT('^(?:-*[^-]){', STR(((386 - ?templateMotifSequenceMatchBeginPositionP0A6V1331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624332, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624332) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6V1MF_00624332, 1, (STRLEN(?targetMotifMatchCigarP0A6V1MF_00624332) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6V1MF_00624332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) .
BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_00624333) - 1) AS ?thisPositionOn112) .
BIND(?thisPositionOn112 AS ?thisPositionOn113) .
BIND(?this AS ?pfs2t344) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00624a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1763 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1763 .
})) .
BIND(?this AS ?case10) .
}
}
"xsd:string |
