| http://purl.uniprot.org/unirules/MF_00627#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:241872 up:source unirule:MF_00627 .
_:241873 up:source unirule:MF_00627 .
_:241874 up:source unirule:MF_00627 .
_:241875 up:source unirule:MF_00627 .
_:241876 up:source unirule:MF_00627 .
_:241877 up:source unirule:MF_00627 .
_:241878 up:source unirule:MF_00627 .
_:241879 up:source unirule:MF_00627 .
_:241880 up:source unirule:MF_00627 .
_:241881 up:source unirule:MF_00627 .
_:241882 up:source unirule:MF_00627 .
_:241883 up:source unirule:MF_00627 .
_:241884 up:source unirule:MF_00627 .
_:241885 up:source unirule:MF_00627 .
_:241886 up:source unirule:MF_00627 .
_:241887 up:source unirule:MF_00627 .
_:241888 up:source unirule:MF_00627 .
_:241889 up:source unirule:MF_00627 .
_:241890 up:source unirule:MF_00627 .
_:241891 up:source unirule:MF_00627 .
_:241892 up:source unirule:MF_00627 .
_:241893 up:source unirule:MF_00627 .
_:241894 up:source unirule:MF_00627 .
_:241895 up:source unirule:MF_00627 .
_:241896 up:source unirule:MF_00627 .
_:241897 up:source unirule:MF_00627 .
_:241898 up:source unirule:MF_00627 .
_:241899 up:source unirule:MF_00627 .
_:241900 up:source unirule:MF_00627 .
_:241901 up:source unirule:MF_00627 .
_:241902 up:source unirule:MF_00627 .
_:241903 up:source unirule:MF_00627 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0006567 ,
GO:0008743 ,
keyword:520 ,
keyword:560 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.103' ;
up:fullName 'L-threonine 3-dehydrogenase' ;
up:shortName 'TDH' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'tdh' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation; L-threonine degradation via oxydo-reductase pathway; glycine from L-threonine: step 1/2.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the zinc-containing alcohol dehydrogenase family.' .
?case10 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs13 up:annotation ?annotation14 ,
?annotation20 ,
?annotation26 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:29105 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:29105 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:29105 .
?pfs32 up:annotation ?annotation33 ,
?annotation39 ,
?annotation45 ,
?annotation51 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:29105 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:29105 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:29105 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:29105 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:57540 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:57540 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb79 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf chebi:57540 .
?pfs90 up:annotation ?annotation91 .
?annotation91 faldo:begin ?pfsb92 ;
faldo:end ?pfse93 ;
up:ligand ?ligand94 ;
rdf:type up:Binding_Site_Annotation .
?pfsb92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?ligand94 rdfs:subClassOf chebi:57540 .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
up:ligand ?ligand101 ;
rdf:type up:Binding_Site_Annotation .
?pfsb99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?ligand101 rdfs:subClassOf chebi:57540 .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity for the proton relay mechanism but does not participate directly in the coordination of zinc atom' .
?pfsb106 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
_:241904 a rdf:Statement ;
up:attribution _:241872 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:241905 a rdf:Statement ;
up:attribution _:241873 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:241906 a rdf:Statement ;
up:attribution _:241874 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:241907 a rdf:Statement ;
up:attribution _:241875 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:241908 a rdf:Statement ;
up:attribution _:241876 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:241909 a rdf:Statement ;
up:attribution _:241877 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:241910 a rdf:Statement ;
up:attribution _:241878 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:241911 a rdf:Statement ;
up:attribution _:241879 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:241912 a rdf:Statement ;
up:attribution _:241880 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:241913 a rdf:Statement ;
up:attribution _:241881 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:241914 a rdf:Statement ;
up:attribution _:241882 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:241915 a rdf:Statement ;
up:attribution _:241883 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008743 .
_:241916 a rdf:Statement ;
up:attribution _:241884 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006567 .
_:241917 a rdf:Statement ;
up:attribution _:241885 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:241918 a rdf:Statement ;
up:attribution _:241886 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:241919 a rdf:Statement ;
up:attribution _:241887 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:241920 a rdf:Statement ;
up:attribution _:241888 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:241921 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:241922 a rdf:Statement ;
up:attribution _:241889 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:241923 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:241924 a rdf:Statement ;
up:attribution _:241890 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:241925 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:241926 a rdf:Statement ;
up:attribution _:241891 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:241927 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:241928 a rdf:Statement ;
up:attribution _:241892 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:241929 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:241930 a rdf:Statement ;
up:attribution _:241893 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:241931 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:241932 a rdf:Statement ;
up:attribution _:241894 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:241933 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:241934 a rdf:Statement ;
up:attribution _:241895 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:241935 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:241936 a rdf:Statement ;
up:attribution _:241896 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:241937 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:241938 a rdf:Statement ;
up:attribution _:241897 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:241939 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:241940 a rdf:Statement ;
up:attribution _:241898 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:241941 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:241942 a rdf:Statement ;
up:attribution _:241899 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:241943 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:241944 a rdf:Statement ;
up:attribution _:241900 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:241945 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:241946 a rdf:Statement ;
up:attribution _:241901 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:241947 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:241948 a rdf:Statement ;
up:attribution _:241902 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:241949 a rdf:Statement ;
up:source unirule:MF_00627 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:241950 a rdf:Statement ;
up:attribution _:241903 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00627
#Rule MF_00627 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-09-18
VALUES ?supertaxon110 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00627 .
?thisOrganism rdfs:subClassOf+ ?supertaxon110 .
BIND(URI(CONCAT(STR(?this), '#MF_00627a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionO58389116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58389118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58389MF_00627111 .
?templateMotifSequenceMatchRegionO58389116 faldo:begin ?templateMotifSequenceMatchBeginO58389117 .
?templateMotifSequenceMatchBeginO58389117 faldo:position ?templateMotifSequenceMatchBeginPositionO58389112 ;
faldo:reference isoform:O58389-1 .
?templateMotifSequenceProfileAlignmentOperationO58389118 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00627122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58389MF_00627113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00627121 .
?targetMotifMatchRegionMatchBeginMF_00627121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00627114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00627122 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627111, 1, (STRLEN(?templateMotifCigarO58389MF_00627111) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627111, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionO58389112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627113, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627113) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627113, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627113) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00627114) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627111, 1, (STRLEN(?templateMotifCigarO58389MF_00627111) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627111, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionO58389112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627113, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627113) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627113, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627113) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_00627114) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627111, 1, (STRLEN(?templateMotifCigarO58389MF_00627111) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627111, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionO58389112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627113, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627113) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627113, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627113) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_00627114) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'E')) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionO58389137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58389139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58389MF_00627132 .
?templateMotifSequenceMatchRegionO58389137 faldo:begin ?templateMotifSequenceMatchBeginO58389138 .
?templateMotifSequenceMatchBeginO58389138 faldo:position ?templateMotifSequenceMatchBeginPositionO58389133 ;
faldo:reference isoform:O58389-1 .
?templateMotifSequenceProfileAlignmentOperationO58389139 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00627143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58389MF_00627134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00627142 .
?targetMotifMatchRegionMatchBeginMF_00627142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00627135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00627143 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627132, 1, (STRLEN(?templateMotifCigarO58389MF_00627132) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627132, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionO58389133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627134, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627134) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627134, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627134) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00627135) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627132, 1, (STRLEN(?templateMotifCigarO58389MF_00627132) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627132, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionO58389133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627134, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627134) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627134, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627134) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00627135) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs2t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627132, 1, (STRLEN(?templateMotifCigarO58389MF_00627132) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627132, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionO58389133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627134, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627134) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627134, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627134) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00627135) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs2t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627132, 1, (STRLEN(?templateMotifCigarO58389MF_00627132) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627132, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionO58389133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627134, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627134) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627134, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627134) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_00627135) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'C')) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionO58389161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58389163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58389MF_00627156 .
?templateMotifSequenceMatchRegionO58389161 faldo:begin ?templateMotifSequenceMatchBeginO58389162 .
?templateMotifSequenceMatchBeginO58389162 faldo:position ?templateMotifSequenceMatchBeginPositionO58389157 ;
faldo:reference isoform:O58389-1 .
?templateMotifSequenceProfileAlignmentOperationO58389163 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00627167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58389MF_00627158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00627166 .
?targetMotifMatchRegionMatchBeginMF_00627166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00627159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00627167 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627156, 1, (STRLEN(?templateMotifCigarO58389MF_00627156) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627156, CONCAT('^(?:-*[^-]){', STR(((266 - ?templateMotifSequenceMatchBeginPositionO58389157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627158, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627158) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627158, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627158) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_00627159) - 1) AS ?thisPositionOn62) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627156, 1, (STRLEN(?templateMotifCigarO58389MF_00627156) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627156, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionO58389157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627158, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627158) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627158, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627158) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_00627159) - 1) AS ?thisPositionOn63) .
BIND(?this AS ?pfs3t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER (REGEX('L[ARNDCQEGHILKMFPSTWYVBZJUOX][LIT]', SUBSTR(?thisSequenceValue, ?thisPositionOn62, (?thisPositionOn63 - ?thisPositionOn62)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionO58389178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58389180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58389MF_00627173 .
?templateMotifSequenceMatchRegionO58389178 faldo:begin ?templateMotifSequenceMatchBeginO58389179 .
?templateMotifSequenceMatchBeginO58389179 faldo:position ?templateMotifSequenceMatchBeginPositionO58389174 ;
faldo:reference isoform:O58389-1 .
?templateMotifSequenceProfileAlignmentOperationO58389180 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00627184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58389MF_00627175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00627183 .
?targetMotifMatchRegionMatchBeginMF_00627183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00627176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00627184 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627173, 1, (STRLEN(?templateMotifCigarO58389MF_00627173) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627173, CONCAT('^(?:-*[^-]){', STR(((291 - ?templateMotifSequenceMatchBeginPositionO58389174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627175, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627175) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627175, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627175) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_00627176) - 1) AS ?thisPositionOn69) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627173, 1, (STRLEN(?templateMotifCigarO58389MF_00627173) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627173, CONCAT('^(?:-*[^-]){', STR(((292 - ?templateMotifSequenceMatchBeginPositionO58389174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627175, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627175) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627175, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627175) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_00627176) - 1) AS ?thisPositionOn70) .
BIND(?this AS ?pfs3t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER (REGEX('[IV][TY]', SUBSTR(?thisSequenceValue, ?thisPositionOn69, (?thisPositionOn70 - ?thisPositionOn69)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionO58389195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58389197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58389MF_00627190 .
?templateMotifSequenceMatchRegionO58389195 faldo:begin ?templateMotifSequenceMatchBeginO58389196 .
?templateMotifSequenceMatchBeginO58389196 faldo:position ?templateMotifSequenceMatchBeginPositionO58389191 ;
faldo:reference isoform:O58389-1 .
?templateMotifSequenceProfileAlignmentOperationO58389197 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00627201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58389MF_00627192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00627200 .
?targetMotifMatchRegionMatchBeginMF_00627200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00627193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00627201 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627190, 1, (STRLEN(?templateMotifCigarO58389MF_00627190) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627190, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionO58389191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627192, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627192) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627192, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627192) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_00627193) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs3t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionO58389210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58389212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58389MF_00627205 .
?templateMotifSequenceMatchRegionO58389210 faldo:begin ?templateMotifSequenceMatchBeginO58389211 .
?templateMotifSequenceMatchBeginO58389211 faldo:position ?templateMotifSequenceMatchBeginPositionO58389206 ;
faldo:reference isoform:O58389-1 .
?templateMotifSequenceProfileAlignmentOperationO58389212 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00627216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58389MF_00627207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00627215 .
?targetMotifMatchRegionMatchBeginMF_00627215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00627208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00627216 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627205, 1, (STRLEN(?templateMotifCigarO58389MF_00627205) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627205, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionO58389206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627207, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627207) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627207, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627207) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_00627208) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs3t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionO58389225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58389227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58389MF_00627220 .
?templateMotifSequenceMatchRegionO58389225 faldo:begin ?templateMotifSequenceMatchBeginO58389226 .
?templateMotifSequenceMatchBeginO58389226 faldo:position ?templateMotifSequenceMatchBeginPositionO58389221 ;
faldo:reference isoform:O58389-1 .
?templateMotifSequenceProfileAlignmentOperationO58389227 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00627231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58389MF_00627222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00627230 .
?targetMotifMatchRegionMatchBeginMF_00627230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00627223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00627231 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627220, 1, (STRLEN(?templateMotifCigarO58389MF_00627220) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627220, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionO58389221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627222, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627222) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627222, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627222) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_00627223) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs3t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) .
FILTER (REGEX('[LIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionO58389240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58389242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58389MF_00627235 .
?templateMotifSequenceMatchRegionO58389240 faldo:begin ?templateMotifSequenceMatchBeginO58389241 .
?templateMotifSequenceMatchBeginO58389241 faldo:position ?templateMotifSequenceMatchBeginPositionO58389236 ;
faldo:reference isoform:O58389-1 .
?templateMotifSequenceProfileAlignmentOperationO58389242 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00627246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58389MF_00627237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00627245 .
?targetMotifMatchRegionMatchBeginMF_00627245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00627238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00627246 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627235, 1, (STRLEN(?templateMotifCigarO58389MF_00627235) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627235, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionO58389236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627237, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627237) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627237, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627237) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_00627238) - 1) AS ?thisPositionOn95) .
BIND(?thisPositionOn95 AS ?thisPositionOn96) .
BIND(?this AS ?pfs3t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse93) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a91')) AS ?annotation91) .
BIND(?this AS ?pfs90) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionO58389255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58389257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58389MF_00627250 .
?templateMotifSequenceMatchRegionO58389255 faldo:begin ?templateMotifSequenceMatchBeginO58389256 .
?templateMotifSequenceMatchBeginO58389256 faldo:position ?templateMotifSequenceMatchBeginPositionO58389251 ;
faldo:reference isoform:O58389-1 .
?templateMotifSequenceProfileAlignmentOperationO58389257 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00627261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58389MF_00627252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00627260 .
?targetMotifMatchRegionMatchBeginMF_00627260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00627253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00627261 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627250, 1, (STRLEN(?templateMotifCigarO58389MF_00627250) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627250, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionO58389251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627252, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627252) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627252, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627252) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_00627253) - 1) AS ?thisPositionOn102) .
BIND(?thisPositionOn102 AS ?thisPositionOn103) .
BIND(?this AS ?pfs3t264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse100) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionO58389270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58389272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58389MF_00627265 .
?templateMotifSequenceMatchRegionO58389270 faldo:begin ?templateMotifSequenceMatchBeginO58389271 .
?templateMotifSequenceMatchBeginO58389271 faldo:position ?templateMotifSequenceMatchBeginPositionO58389266 ;
faldo:reference isoform:O58389-1 .
?templateMotifSequenceProfileAlignmentOperationO58389272 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00627276 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58389MF_00627267 .
?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00627275 .
?targetMotifMatchRegionMatchBeginMF_00627275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00627268 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00627276 edam:has_input signature:MF_00627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58389MF_00627265, 1, (STRLEN(?templateMotifCigarO58389MF_00627265) - STRLEN(REPLACE(?templateMotifCigarO58389MF_00627265, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionO58389266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58389MF_00627267, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627267) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58389MF_00627267, 1, (STRLEN(?targetMotifMatchCigarO58389MF_00627267) - STRLEN(REPLACE(?targetMotifMatchCigarO58389MF_00627267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_00627268) - 1) AS ?thisPositionOn108) .
BIND(?thisPositionOn108 AS ?thisPositionOn109) .
BIND(?this AS ?pfs3t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse107) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn108, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00627a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag280) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag280, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag281) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag281, ?UNBOUND_VARIABLE) AS ?case11) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag282) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag282, ?UNBOUND_VARIABLE) AS ?case12) .
}
"xsd:string |
