| http://purl.uniprot.org/unirules/MF_00641#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:245518 up:source unirule:MF_00641 .
_:245519 up:source unirule:MF_00641 .
_:245520 up:source unirule:MF_00641 .
_:245521 up:source unirule:MF_00641 .
_:245522 up:source unirule:MF_00641 .
_:245523 up:source unirule:MF_00641 .
_:245524 up:source unirule:MF_00641 .
_:245525 up:source unirule:MF_00641 .
_:245526 up:source unirule:MF_00641 .
_:245527 up:source unirule:MF_00641 .
_:245528 up:source unirule:MF_00641 .
_:245529 up:source unirule:MF_00641 .
_:245530 up:source unirule:MF_00641 .
_:245531 up:source unirule:MF_00641 .
_:245532 up:source unirule:MF_00641 .
_:245533 up:source unirule:MF_00641 .
_:245534 up:source unirule:MF_00641 .
_:245535 up:source unirule:MF_00641 .
_:245536 up:source unirule:MF_00641 .
_:245537 up:source unirule:MF_00641 .
_:245538 up:source unirule:MF_00641 .
_:245539 up:source unirule:MF_00641 .
_:245540 up:source unirule:MF_00641 .
_:245541 up:source unirule:MF_00641 .
_:245542 up:source unirule:MF_00641 .
_:245543 up:source unirule:MF_00641 .
_:245544 up:source unirule:MF_00641 .
_:245545 up:source unirule:MF_00641 .
_:245546 up:source unirule:MF_00641 .
_:245547 up:source unirule:MF_00641 .
_:245548 up:source unirule:MF_00641 .
_:245549 up:source unirule:MF_00641 .
_:245550 up:source unirule:MF_00641 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0004474 ,
GO:0005737 ,
GO:0006097 ,
keyword:329 ,
keyword:460 ,
keyword:479 ,
keyword:558 ,
keyword:808 ,
keyword:816 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.3.9' ;
up:fullName 'Malate synthase G' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'glcB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the malate synthase family. GlcB subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:57288 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:36655 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:18420 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:18420 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:57288 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:57288 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:57288 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:36655 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:36655 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:57288 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Cysteine sulfenic acid (-SOH)' .
?pfsb95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Cysteine sulfenic acid (-SOH)' .
?pfsb101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
_:245551 a rdf:Statement ;
up:attribution _:245518 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:245552 a rdf:Statement ;
up:attribution _:245519 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:245553 a rdf:Statement ;
up:attribution _:245520 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:245554 a rdf:Statement ;
up:attribution _:245521 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:245555 a rdf:Statement ;
up:attribution _:245522 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:245556 a rdf:Statement ;
up:attribution _:245523 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:245557 a rdf:Statement ;
up:attribution _:245524 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:245558 a rdf:Statement ;
up:attribution _:245525 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:245559 a rdf:Statement ;
up:attribution _:245526 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:245560 a rdf:Statement ;
up:attribution _:245527 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:245561 a rdf:Statement ;
up:attribution _:245528 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:245562 a rdf:Statement ;
up:attribution _:245529 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:329 .
_:245563 a rdf:Statement ;
up:attribution _:245530 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:245564 a rdf:Statement ;
up:attribution _:245531 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:245565 a rdf:Statement ;
up:attribution _:245532 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:816 .
_:245566 a rdf:Statement ;
up:attribution _:245533 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:558 .
_:245567 a rdf:Statement ;
up:attribution _:245534 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004474 .
_:245568 a rdf:Statement ;
up:attribution _:245535 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006097 .
_:245569 a rdf:Statement ;
up:attribution _:245536 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:245570 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:245571 a rdf:Statement ;
up:attribution _:245537 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:245572 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:245573 a rdf:Statement ;
up:attribution _:245538 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:245574 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:245575 a rdf:Statement ;
up:attribution _:245539 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:245576 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:245577 a rdf:Statement ;
up:attribution _:245540 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:245578 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:245579 a rdf:Statement ;
up:attribution _:245541 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:245580 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:245581 a rdf:Statement ;
up:attribution _:245542 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:245582 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:245583 a rdf:Statement ;
up:attribution _:245543 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:245584 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:245585 a rdf:Statement ;
up:attribution _:245544 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:245586 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:245587 a rdf:Statement ;
up:attribution _:245545 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:245588 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:245589 a rdf:Statement ;
up:attribution _:245546 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:245590 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:245591 a rdf:Statement ;
up:attribution _:245547 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:245592 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:245593 a rdf:Statement ;
up:attribution _:245548 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:245594 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:245595 a rdf:Statement ;
up:attribution _:245549 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:245596 a rdf:Statement ;
up:source unirule:MF_00641 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:245597 a rdf:Statement ;
up:attribution _:245550 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00641
#Rule MF_00641 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00641 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00641a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP37330110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641105 .
?templateMotifSequenceMatchRegionP37330110 faldo:begin ?templateMotifSequenceMatchBeginP37330111 .
?templateMotifSequenceMatchBeginP37330111 faldo:position ?templateMotifSequenceMatchBeginPositionP37330106 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330112 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641115 .
?targetMotifMatchRegionMatchBeginMF_00641115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641116 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641105, 1, (STRLEN(?templateMotifCigarP37330MF_00641105) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641105, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP37330106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641107, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641107) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641107, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641107) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00641108) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641105, 1, (STRLEN(?templateMotifCigarP37330MF_00641105) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641105, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP37330106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641107, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641107) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641107, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641107) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00641108) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP37330127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641122 .
?templateMotifSequenceMatchRegionP37330127 faldo:begin ?templateMotifSequenceMatchBeginP37330128 .
?templateMotifSequenceMatchBeginP37330128 faldo:position ?templateMotifSequenceMatchBeginPositionP37330123 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330129 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641132 .
?targetMotifMatchRegionMatchBeginMF_00641132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641133 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641122, 1, (STRLEN(?templateMotifCigarP37330MF_00641122) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641122, CONCAT('^(?:-*[^-]){', STR(((452 - ?templateMotifSequenceMatchBeginPositionP37330123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641124, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641124) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641124, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641124) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_00641125) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641122, 1, (STRLEN(?templateMotifCigarP37330MF_00641122) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641122, CONCAT('^(?:-*[^-]){', STR(((455 - ?templateMotifSequenceMatchBeginPositionP37330123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641124, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641124) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641124, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641124) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_00641125) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP37330144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641139 .
?templateMotifSequenceMatchRegionP37330144 faldo:begin ?templateMotifSequenceMatchBeginP37330145 .
?templateMotifSequenceMatchBeginP37330145 faldo:position ?templateMotifSequenceMatchBeginPositionP37330140 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330146 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641149 .
?targetMotifMatchRegionMatchBeginMF_00641149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641150 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641139, 1, (STRLEN(?templateMotifCigarP37330MF_00641139) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641139, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionP37330140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641141, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641141) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641141, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641141) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00641142) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP37330159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641154 .
?templateMotifSequenceMatchRegionP37330159 faldo:begin ?templateMotifSequenceMatchBeginP37330160 .
?templateMotifSequenceMatchBeginP37330160 faldo:position ?templateMotifSequenceMatchBeginPositionP37330155 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330161 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641164 .
?targetMotifMatchRegionMatchBeginMF_00641164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641165 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641154, 1, (STRLEN(?templateMotifCigarP37330MF_00641154) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641154, CONCAT('^(?:-*[^-]){', STR(((631 - ?templateMotifSequenceMatchBeginPositionP37330155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641156, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641156) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641156, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641156) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00641157) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP37330174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641169 .
?templateMotifSequenceMatchRegionP37330174 faldo:begin ?templateMotifSequenceMatchBeginP37330175 .
?templateMotifSequenceMatchBeginP37330175 faldo:position ?templateMotifSequenceMatchBeginPositionP37330170 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330176 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641179 .
?targetMotifMatchRegionMatchBeginMF_00641179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641180 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641169, 1, (STRLEN(?templateMotifCigarP37330MF_00641169) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641169, CONCAT('^(?:-*[^-]){', STR(((427 - ?templateMotifSequenceMatchBeginPositionP37330170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641171, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641171) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641171, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641171) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00641172) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP37330189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641184 .
?templateMotifSequenceMatchRegionP37330189 faldo:begin ?templateMotifSequenceMatchBeginP37330190 .
?templateMotifSequenceMatchBeginP37330190 faldo:position ?templateMotifSequenceMatchBeginPositionP37330185 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330191 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641194 .
?targetMotifMatchRegionMatchBeginMF_00641194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641195 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641184, 1, (STRLEN(?templateMotifCigarP37330MF_00641184) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641184, CONCAT('^(?:-*[^-]){', STR(((455 - ?templateMotifSequenceMatchBeginPositionP37330185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641186, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641186) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641186, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641186) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_00641187) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP37330204 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330206 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641199 .
?templateMotifSequenceMatchRegionP37330204 faldo:begin ?templateMotifSequenceMatchBeginP37330205 .
?templateMotifSequenceMatchBeginP37330205 faldo:position ?templateMotifSequenceMatchBeginPositionP37330200 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330206 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641210 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641201 .
?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641209 .
?targetMotifMatchRegionMatchBeginMF_00641209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641202 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641210 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641199, 1, (STRLEN(?templateMotifCigarP37330MF_00641199) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641199, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP37330200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641201, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641201) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641201, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641201) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_00641202) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'V')) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP37330219 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330221 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641214 .
?templateMotifSequenceMatchRegionP37330219 faldo:begin ?templateMotifSequenceMatchBeginP37330220 .
?templateMotifSequenceMatchBeginP37330220 faldo:position ?templateMotifSequenceMatchBeginPositionP37330215 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330221 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641216 .
?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641224 .
?targetMotifMatchRegionMatchBeginMF_00641224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641225 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641214, 1, (STRLEN(?templateMotifCigarP37330MF_00641214) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641214, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP37330215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641216, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641216) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641216, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641216) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_00641217) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP37330234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641229 .
?templateMotifSequenceMatchRegionP37330234 faldo:begin ?templateMotifSequenceMatchBeginP37330235 .
?templateMotifSequenceMatchBeginP37330235 faldo:position ?templateMotifSequenceMatchBeginPositionP37330230 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330236 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641239 .
?targetMotifMatchRegionMatchBeginMF_00641239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641240 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641229, 1, (STRLEN(?templateMotifCigarP37330MF_00641229) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641229, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionP37330230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641231, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641231) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641231, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641231) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_00641232) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP37330249 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330251 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641244 .
?templateMotifSequenceMatchRegionP37330249 faldo:begin ?templateMotifSequenceMatchBeginP37330250 .
?templateMotifSequenceMatchBeginP37330250 faldo:position ?templateMotifSequenceMatchBeginPositionP37330245 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330251 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641246 .
?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641254 .
?targetMotifMatchRegionMatchBeginMF_00641254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641255 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641244, 1, (STRLEN(?templateMotifCigarP37330MF_00641244) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641244, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionP37330245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641246, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641246) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641246, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641246) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_00641247) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t258) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionP37330264 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330266 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641259 .
?templateMotifSequenceMatchRegionP37330264 faldo:begin ?templateMotifSequenceMatchBeginP37330265 .
?templateMotifSequenceMatchBeginP37330265 faldo:position ?templateMotifSequenceMatchBeginPositionP37330260 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330266 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641270 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641261 .
?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641269 .
?targetMotifMatchRegionMatchBeginMF_00641269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641262 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641270 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641259, 1, (STRLEN(?templateMotifCigarP37330MF_00641259) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641259, CONCAT('^(?:-*[^-]){', STR(((427 - ?templateMotifSequenceMatchBeginPositionP37330260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641261, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641261) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641261, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641261) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) .
BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_00641262) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t273) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch278 faldo:location ?templateMotifSequenceMatchRegionP37330279 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330281 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641274 .
?templateMotifSequenceMatchRegionP37330279 faldo:begin ?templateMotifSequenceMatchBeginP37330280 .
?templateMotifSequenceMatchBeginP37330280 faldo:position ?templateMotifSequenceMatchBeginPositionP37330275 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330281 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch282 faldo:location ?targetMotifMatchRegionMatch283 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641285 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641276 .
?targetMotifMatchRegionMatch283 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641284 .
?targetMotifMatchRegionMatchBeginMF_00641284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641277 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641285 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641274, 1, (STRLEN(?templateMotifCigarP37330MF_00641274) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641274, CONCAT('^(?:-*[^-]){', STR(((536 - ?templateMotifSequenceMatchBeginPositionP37330275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1286) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641276, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641276) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641276, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641276) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), '')))), '[^-]', ''))) AS ?step2287) .
BIND(((?step2287 + ?targetMotifMatchRegionMatchBeginPositionMF_00641277) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t288) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'P')) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch293 faldo:location ?templateMotifSequenceMatchRegionP37330294 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330296 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641289 .
?templateMotifSequenceMatchRegionP37330294 faldo:begin ?templateMotifSequenceMatchBeginP37330295 .
?templateMotifSequenceMatchBeginP37330295 faldo:position ?templateMotifSequenceMatchBeginPositionP37330290 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330296 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch297 faldo:location ?targetMotifMatchRegionMatch298 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641300 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641291 .
?targetMotifMatchRegionMatch298 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641299 .
?targetMotifMatchRegionMatchBeginMF_00641299 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641292 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641300 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641289, 1, (STRLEN(?templateMotifCigarP37330MF_00641289) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641289, CONCAT('^(?:-*[^-]){', STR(((617 - ?templateMotifSequenceMatchBeginPositionP37330290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1301) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641291, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641291) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641291, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641291) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), '')))), '[^-]', ''))) AS ?step2302) .
BIND(((?step2302 + ?targetMotifMatchRegionMatchBeginPositionMF_00641292) - 1) AS ?thisPositionOn97) .
BIND(?thisPositionOn97 AS ?thisPositionOn98) .
BIND(?this AS ?pfs1t303) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch308 faldo:location ?templateMotifSequenceMatchRegionP37330309 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330311 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP37330MF_00641304 .
?templateMotifSequenceMatchRegionP37330309 faldo:begin ?templateMotifSequenceMatchBeginP37330310 .
?templateMotifSequenceMatchBeginP37330310 faldo:position ?templateMotifSequenceMatchBeginPositionP37330305 ;
faldo:reference isoform:P37330-1 .
?templateMotifSequenceProfileAlignmentOperationP37330311 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
?targetMotifMatch312 faldo:location ?targetMotifMatchRegionMatch313 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641315 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP37330MF_00641306 .
?targetMotifMatchRegionMatch313 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641314 .
?targetMotifMatchRegionMatchBeginMF_00641314 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641307 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00641315 edam:has_input signature:MF_00641 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641304, 1, (STRLEN(?templateMotifCigarP37330MF_00641304) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641304, CONCAT('^(?:-*[^-]){', STR(((688 - ?templateMotifSequenceMatchBeginPositionP37330305) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1316) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641306, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641306) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641306, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641306, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641306) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641306, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), '')))), '[^-]', ''))) AS ?step2317) .
BIND(((?step2317 + ?targetMotifMatchRegionMatchBeginPositionMF_00641307) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs1t318) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse102) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00641a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
}
"xsd:string |
