| http://purl.uniprot.org/unirules/MF_00692#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:258687 up:source unirule:MF_00692 .
_:258688 up:source unirule:MF_00692 .
_:258689 up:source unirule:MF_00692 .
_:258690 up:source unirule:MF_00692 .
_:258691 up:source unirule:MF_00692 .
_:258692 up:source unirule:MF_00692 .
_:258693 up:source unirule:MF_00692 .
_:258694 up:source unirule:MF_00692 .
_:258695 up:source unirule:MF_00692 .
_:258696 up:source unirule:MF_00692 .
_:258697 up:source unirule:MF_00692 .
_:258698 up:source unirule:MF_00692 .
_:258699 up:source unirule:MF_00692 .
_:258700 up:source unirule:MF_00692 .
_:258701 up:source unirule:MF_00692 .
_:258702 up:source unirule:MF_00692 .
_:258703 up:source unirule:MF_00692 .
_:258704 up:source unirule:MF_00692 .
_:258705 up:source unirule:MF_00692 .
_:258706 up:source unirule:MF_00692 .
_:258707 up:source unirule:MF_00692 .
_:258708 up:source unirule:MF_00692 .
_:258709 up:source unirule:MF_00692 .
_:258710 up:source unirule:MF_00692 .
_:258711 up:source unirule:MF_00692 .
_:258712 up:source unirule:MF_00692 .
_:258713 up:source unirule:MF_00692 .
_:258714 up:source unirule:MF_00692 .
_:258715 up:source unirule:MF_00692 .
_:258716 up:source unirule:MF_00692 .
_:258717 up:source unirule:MF_00692 .
_:258718 up:source unirule:MF_00692 .
_:258719 up:source unirule:MF_00692 .
_:258720 up:source unirule:MF_00692 .
_:258721 up:source unirule:MF_00692 .
_:258722 up:source unirule:MF_00692 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation11 ,
?annotation13 ,
?annotation15 ,
?annotation17 ,
?annotation18 ;
up:classifiedWith GO:0000287 ,
GO:0005524 ,
GO:0016779 ,
GO:0030145 ,
keyword:460 ,
keyword:464 ,
keyword:479 ,
keyword:547 ,
keyword:548 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.-' ;
up:fullName 'Protein nucleotidyltransferase YdiU' ;
rdf:type up:Structured_Name .
?name1 up:ecName '2.7.7.108' ;
up:fullName 'Protein adenylyltransferase YdiU' ;
rdf:type up:Structured_Name .
?name2 up:ecName '2.7.7.-' ;
up:fullName 'Protein uridylyltransferase YdiU' ;
rdf:type up:Structured_Name .
?gene3 skos:altLabel 'selO' ;
skos:prefLabel 'ydiU' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Nucleotidyltransferase involved in the post-translational modification of proteins. It can catalyze the addition of adenosine monophosphate (AMP) or uridine monophosphate (UMP) to a protein, resulting in modifications known as AMPylation and UMPylation.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 up:activity ?activity10 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity10 up:catalyticActivity ;
up:enzymeClass .
?annotation11 up:activity ?activity12 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity12 up:catalyticActivity .
?annotation13 up:activity ?activity14 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity14 up:catalyticActivity .
?annotation15 up:activity ?activity16 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity16 up:catalyticActivity .
?annotation17 up:cofactor chebi:18420 ,
chebi:29035 ;
rdf:type up:Cofactor_Annotation .
?annotation18 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the SELO family.' .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:30616 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:30616 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:30616 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:30616 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:30616 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:30616 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:30616 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:30616 .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation .
?pfsb83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf chebi:18420 .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf chebi:30616 .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation .
?pfsb97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf chebi:18420 .
_:258723 a rdf:Statement ;
up:attribution _:258687 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:258724 a rdf:Statement ;
up:attribution _:258688 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:258725 a rdf:Statement ;
up:attribution _:258689 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:258726 a rdf:Statement ;
up:attribution _:258690 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:258727 a rdf:Statement ;
up:attribution _:258691 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:258728 a rdf:Statement ;
up:attribution _:258692 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:258729 a rdf:Statement ;
up:attribution _:258693 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:258730 a rdf:Statement ;
up:attribution _:258694 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:258731 a rdf:Statement ;
up:attribution _:258695 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:258732 a rdf:Statement ;
up:attribution _:258696 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:258733 a rdf:Statement ;
up:attribution _:258697 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:258734 a rdf:Statement ;
up:attribution _:258698 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:258735 a rdf:Statement ;
up:attribution _:258699 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:258736 a rdf:Statement ;
up:attribution _:258700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:258737 a rdf:Statement ;
up:attribution _:258701 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:258738 a rdf:Statement ;
up:attribution _:258702 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:258739 a rdf:Statement ;
up:attribution _:258703 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:258740 a rdf:Statement ;
up:attribution _:258704 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:258741 a rdf:Statement ;
up:attribution _:258705 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:258742 a rdf:Statement ;
up:attribution _:258706 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:258743 a rdf:Statement ;
up:attribution _:258707 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:258744 a rdf:Statement ;
up:attribution _:258708 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:258745 a rdf:Statement ;
up:attribution _:258709 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:258746 a rdf:Statement ;
up:attribution _:258710 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016779 .
_:258747 a rdf:Statement ;
up:source unirule:MF_00692 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:258748 a rdf:Statement ;
up:attribution _:258711 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:258749 a rdf:Statement ;
up:source unirule:MF_00692 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:258750 a rdf:Statement ;
up:attribution _:258712 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:258751 a rdf:Statement ;
up:source unirule:MF_00692 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:258752 a rdf:Statement ;
up:attribution _:258713 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:258753 a rdf:Statement ;
up:source unirule:MF_00692 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:258754 a rdf:Statement ;
up:attribution _:258714 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:258755 a rdf:Statement ;
up:source unirule:MF_00692 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:258756 a rdf:Statement ;
up:attribution _:258715 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:258757 a rdf:Statement ;
up:source unirule:MF_00692 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:258758 a rdf:Statement ;
up:attribution _:258716 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:258759 a rdf:Statement ;
up:source unirule:MF_00692 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:258760 a rdf:Statement ;
up:attribution _:258717 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:258761 a rdf:Statement ;
up:source unirule:MF_00692 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:258762 a rdf:Statement ;
up:attribution _:258718 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:258763 a rdf:Statement ;
up:source unirule:MF_00692 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:258764 a rdf:Statement ;
up:attribution _:258719 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:258765 a rdf:Statement ;
up:source unirule:MF_00692 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:258766 a rdf:Statement ;
up:attribution _:258720 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:258767 a rdf:Statement ;
up:source unirule:MF_00692 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:258768 a rdf:Statement ;
up:attribution _:258721 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:258769 a rdf:Statement ;
up:source unirule:MF_00692 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:258770 a rdf:Statement ;
up:attribution _:258722 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00692
#Rule MF_00692 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-02-14
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00692 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00692a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a15')) AS ?annotation15) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a17')) AS ?annotation17) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a18')) AS ?annotation18) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionQ87VB1107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ87VB1MF_00692102 .
?templateMotifSequenceMatchRegionQ87VB1107 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1108 .
?templateMotifSequenceMatchBeginQ87VB1108 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1103 ;
faldo:reference isoform:Q87VB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ87VB1109 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ87VB1MF_00692104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692112 .
?targetMotifMatchRegionMatchBeginMF_00692112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00692113 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692102, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692102) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692102, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionQ87VB1103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692104, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692104) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692104, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692104) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_00692105) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionQ87VB1122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ87VB1MF_00692117 .
?templateMotifSequenceMatchRegionQ87VB1122 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1123 .
?templateMotifSequenceMatchBeginQ87VB1123 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1118 ;
faldo:reference isoform:Q87VB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ87VB1124 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ87VB1MF_00692119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692127 .
?targetMotifMatchRegionMatchBeginMF_00692127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00692128 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692117, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692117) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692117, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionQ87VB1118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692119, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692119) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692119, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692119) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_00692120) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionQ87VB1137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ87VB1MF_00692132 .
?templateMotifSequenceMatchRegionQ87VB1137 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1138 .
?templateMotifSequenceMatchBeginQ87VB1138 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1133 ;
faldo:reference isoform:Q87VB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ87VB1139 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ87VB1MF_00692134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692142 .
?targetMotifMatchRegionMatchBeginMF_00692142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00692143 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692132, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692132) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692132, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionQ87VB1133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692134, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692134) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692134, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692134) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00692135) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionQ87VB1152 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1154 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ87VB1MF_00692147 .
?templateMotifSequenceMatchRegionQ87VB1152 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1153 .
?templateMotifSequenceMatchBeginQ87VB1153 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1148 ;
faldo:reference isoform:Q87VB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ87VB1154 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692158 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ87VB1MF_00692149 .
?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692157 .
?targetMotifMatchRegionMatchBeginMF_00692157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692150 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00692158 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692147, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692147) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692147, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionQ87VB1148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692149, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692149) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692149, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692149) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_00692150) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionQ87VB1167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ87VB1MF_00692162 .
?templateMotifSequenceMatchRegionQ87VB1167 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1168 .
?templateMotifSequenceMatchBeginQ87VB1168 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1163 ;
faldo:reference isoform:Q87VB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ87VB1169 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692173 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ87VB1MF_00692164 .
?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692172 .
?targetMotifMatchRegionMatchBeginMF_00692172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692165 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00692173 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692162, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692162) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692162, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionQ87VB1163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692164, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692164) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692164, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692164) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) .
BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_00692165) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionQ87VB1182 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1184 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ87VB1MF_00692177 .
?templateMotifSequenceMatchRegionQ87VB1182 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1183 .
?templateMotifSequenceMatchBeginQ87VB1183 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1178 ;
faldo:reference isoform:Q87VB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ87VB1184 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692188 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ87VB1MF_00692179 .
?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692187 .
?targetMotifMatchRegionMatchBeginMF_00692187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692180 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00692188 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692177, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692177) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692177, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionQ87VB1178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692179, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692179) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692179, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692179) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_00692180) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionQ87VB1197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ87VB1MF_00692192 .
?templateMotifSequenceMatchRegionQ87VB1197 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1198 .
?templateMotifSequenceMatchBeginQ87VB1198 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1193 ;
faldo:reference isoform:Q87VB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ87VB1199 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692203 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ87VB1MF_00692194 .
?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692202 .
?targetMotifMatchRegionMatchBeginMF_00692202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692195 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00692203 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692192, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692192) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692192, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionQ87VB1193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692194, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692194) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692194, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692194) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_00692195) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t206) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionQ87VB1212 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1214 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ87VB1MF_00692207 .
?templateMotifSequenceMatchRegionQ87VB1212 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1213 .
?templateMotifSequenceMatchBeginQ87VB1213 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1208 ;
faldo:reference isoform:Q87VB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ87VB1214 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692218 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ87VB1MF_00692209 .
?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692217 .
?targetMotifMatchRegionMatchBeginMF_00692217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692210 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00692218 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692207, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692207) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692207, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ87VB1208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692209, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692209) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692209, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692209) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_00692210) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionQ87VB1227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ87VB1MF_00692222 .
?templateMotifSequenceMatchRegionQ87VB1227 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1228 .
?templateMotifSequenceMatchBeginQ87VB1228 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1223 ;
faldo:reference isoform:Q87VB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ87VB1229 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ87VB1MF_00692224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692232 .
?targetMotifMatchRegionMatchBeginMF_00692232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00692233 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692222, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692222) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692222, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionQ87VB1223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692224, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692224) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692224, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692224) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_00692225) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionQ87VB1242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ87VB1MF_00692237 .
?templateMotifSequenceMatchRegionQ87VB1242 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1243 .
?templateMotifSequenceMatchBeginQ87VB1243 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1238 ;
faldo:reference isoform:Q87VB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ87VB1244 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692248 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ87VB1MF_00692239 .
?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692247 .
?targetMotifMatchRegionMatchBeginMF_00692247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692240 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00692248 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692237, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692237) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692237, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionQ87VB1238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692239, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692239) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692239, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692239) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_00692240) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionQ87VB1257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ87VB1MF_00692252 .
?templateMotifSequenceMatchRegionQ87VB1257 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1258 .
?templateMotifSequenceMatchBeginQ87VB1258 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1253 ;
faldo:reference isoform:Q87VB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ87VB1259 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ87VB1MF_00692254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692262 .
?targetMotifMatchRegionMatchBeginMF_00692262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00692263 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692252, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692252) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692252, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionQ87VB1253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692254, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692254) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692254, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692254) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_00692255) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs1t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionQ87VB1272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ87VB1274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ87VB1MF_00692267 .
?templateMotifSequenceMatchRegionQ87VB1272 faldo:begin ?templateMotifSequenceMatchBeginQ87VB1273 .
?templateMotifSequenceMatchBeginQ87VB1273 faldo:position ?templateMotifSequenceMatchBeginPositionQ87VB1268 ;
faldo:reference isoform:Q87VB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ87VB1274 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00692278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ87VB1MF_00692269 .
?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00692277 .
?targetMotifMatchRegionMatchBeginMF_00692277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00692270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00692278 edam:has_input signature:MF_00692 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ87VB1MF_00692267, 1, (STRLEN(?templateMotifCigarQ87VB1MF_00692267) - STRLEN(REPLACE(?templateMotifCigarQ87VB1MF_00692267, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionQ87VB1268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692269, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692269) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ87VB1MF_00692269, 1, (STRLEN(?targetMotifMatchCigarQ87VB1MF_00692269) - STRLEN(REPLACE(?targetMotifMatchCigarQ87VB1MF_00692269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_00692270) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs1t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse98) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00692a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
}
"xsd:string |
