| http://purl.uniprot.org/unirules/MF_00809#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:289245 up:source unirule:MF_00809 .
_:289246 up:source unirule:MF_00809 .
_:289247 up:source unirule:MF_00809 .
_:289248 up:source unirule:MF_00809 .
_:289249 up:source unirule:MF_00809 .
_:289250 up:source unirule:MF_00809 .
_:289251 up:source unirule:MF_00809 .
_:289252 up:source unirule:MF_00809 .
_:289253 up:source unirule:MF_00809 .
_:289254 up:source unirule:MF_00809 .
_:289255 up:source unirule:MF_00809 .
_:289256 up:source unirule:MF_00809 .
_:289257 up:source unirule:MF_00809 .
_:289258 up:source unirule:MF_00809 .
_:289259 up:source unirule:MF_00809 .
_:289260 up:source unirule:MF_00809 .
_:289261 up:source unirule:MF_00809 .
_:289262 up:source unirule:MF_00809 .
_:289263 up:source unirule:MF_00809 .
_:289264 up:source unirule:MF_00809 .
_:289265 up:source unirule:MF_00809 .
_:289266 up:source unirule:MF_00809 .
_:289267 up:source unirule:MF_00809 .
_:289268 up:source unirule:MF_00809 .
_:289269 up:source unirule:MF_00809 .
_:289270 up:source unirule:MF_00809 .
_:289271 up:source unirule:MF_00809 .
_:289272 up:source unirule:MF_00809 .
_:289273 up:source unirule:MF_00809 .
_:289274 up:source unirule:MF_00809 .
_:289275 up:source unirule:MF_00809 .
_:289276 up:source unirule:MF_00809 .
_:289277 up:source unirule:MF_00809 .
_:289278 up:source unirule:MF_00809 .
_:289279 up:source unirule:MF_00809 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation13 ;
up:classifiedWith GO:0004340 ,
GO:0005737 ,
GO:0006096 ,
keyword:119 ,
keyword:313 ,
keyword:324 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.-' ,
'2.7.1.147' ;
up:fullName 'ADP-dependent glucose/glucosamine kinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'ADP-dependent glucokinase' ;
up:shortName 'ADP-GK' ,
'ADPGK' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Glucosamine kinase' ;
up:shortName 'GlcN kinase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'glkA' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the ADP-dependent phosphorylation of D-glucose to D-glucose 6-phosphate and glucosamine to glucosamine 6-phosphate.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity .
?annotation9 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' .
?annotation10 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; glycolysis.' .
?annotation11 a up:Subcellular_Location_Annotation .
?annotation11li12 up:cellularComponent .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ADP-dependent glucokinase family.' .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:456216 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:4167 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:18420 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:18420 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:18420 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:4167 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:4167 .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf chebi:4167 .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf chebi:456216 .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf chebi:456216 .
?pfs90 up:annotation ?annotation91 .
?annotation91 faldo:begin ?pfsb92 ;
faldo:end ?pfse93 ;
up:ligand ?ligand94 ;
rdf:type up:Binding_Site_Annotation .
?pfsb92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?ligand94 rdfs:subClassOf chebi:456216 .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
up:ligand ?ligand101 ;
rdf:type up:Binding_Site_Annotation .
?pfsb99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?ligand101 rdfs:subClassOf chebi:4167 .
_:289280 a rdf:Statement ;
up:attribution _:289245 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:289281 a rdf:Statement ;
up:attribution _:289246 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:289282 a rdf:Statement ;
up:attribution _:289247 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:289283 a rdf:Statement ;
up:attribution _:289248 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:289284 a rdf:Statement ;
up:attribution _:289249 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:289285 a rdf:Statement ;
up:attribution _:289250 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:289286 a rdf:Statement ;
up:attribution _:289251 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:289287 a rdf:Statement ;
up:attribution _:289252 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:289288 a rdf:Statement ;
up:attribution _:289253 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:289289 a rdf:Statement ;
up:attribution _:289254 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:289290 a rdf:Statement ;
up:attribution _:289255 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:289291 a rdf:Statement ;
up:attribution _:289256 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:289292 a rdf:Statement ;
up:attribution _:289257 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:289293 a rdf:Statement ;
up:attribution _:289258 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:313 .
_:289294 a rdf:Statement ;
up:attribution _:289259 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:324 .
_:289295 a rdf:Statement ;
up:attribution _:289260 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:289296 a rdf:Statement ;
up:attribution _:289261 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:289297 a rdf:Statement ;
up:attribution _:289262 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:289298 a rdf:Statement ;
up:attribution _:289263 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:289299 a rdf:Statement ;
up:attribution _:289264 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004340 .
_:289300 a rdf:Statement ;
up:attribution _:289265 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
_:289301 a rdf:Statement ;
up:attribution _:289266 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:289302 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:289303 a rdf:Statement ;
up:attribution _:289267 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:289304 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:289305 a rdf:Statement ;
up:attribution _:289268 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:289306 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:289307 a rdf:Statement ;
up:attribution _:289269 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:289308 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:289309 a rdf:Statement ;
up:attribution _:289270 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:289310 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:289311 a rdf:Statement ;
up:attribution _:289271 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:289312 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:289313 a rdf:Statement ;
up:attribution _:289272 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:289314 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:289315 a rdf:Statement ;
up:attribution _:289273 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:289316 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:289317 a rdf:Statement ;
up:attribution _:289274 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:289318 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:289319 a rdf:Statement ;
up:attribution _:289275 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:289320 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:289321 a rdf:Statement ;
up:attribution _:289276 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:289322 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:289323 a rdf:Statement ;
up:attribution _:289277 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:289324 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:289325 a rdf:Statement ;
up:attribution _:289278 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:289326 a rdf:Statement ;
up:source unirule:MF_00809 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:289327 a rdf:Statement ;
up:attribution _:289279 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00809
#Rule MF_00809 Created by:? on:2005-04-06 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00809 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00809a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6109 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6111 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809104 .
?templateMotifSequenceMatchRegionQ9V2Z6109 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6110 .
?templateMotifSequenceMatchBeginQ9V2Z6110 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6105 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6111 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809115 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809106 .
?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809114 .
?targetMotifMatchRegionMatchBeginMF_00809114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809107 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809115 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809104, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809104) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809104, CONCAT('^(?:-*[^-]){', STR(((342 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809106, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809106, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_00809107) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809104, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809104) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809104, CONCAT('^(?:-*[^-]){', STR(((343 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809106, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809106, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_00809107) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)) = 'HT')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6126 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6128 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809121 .
?templateMotifSequenceMatchRegionQ9V2Z6126 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6127 .
?templateMotifSequenceMatchBeginQ9V2Z6127 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6122 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6128 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809132 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809123 .
?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809131 .
?targetMotifMatchRegionMatchBeginMF_00809131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809124 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809132 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809121, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809121) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809121, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809123, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809123, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_00809124) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809121, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809121) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809121, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809123, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809123, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00809124) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)) = 'GQ')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809138 .
?templateMotifSequenceMatchRegionQ9V2Z6143 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6144 .
?templateMotifSequenceMatchBeginQ9V2Z6144 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6139 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6145 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809148 .
?targetMotifMatchRegionMatchBeginMF_00809148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809149 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809138, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809138) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809138, CONCAT('^(?:-*[^-]){', STR(((440 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809140, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809140, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00809141) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809153 .
?templateMotifSequenceMatchRegionQ9V2Z6158 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6159 .
?templateMotifSequenceMatchBeginQ9V2Z6159 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6154 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6160 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809163 .
?targetMotifMatchRegionMatchBeginMF_00809163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809164 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809153, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809153) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809153, CONCAT('^(?:-*[^-]){', STR(((266 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809155, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809155, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00809156) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809168 .
?templateMotifSequenceMatchRegionQ9V2Z6173 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6174 .
?templateMotifSequenceMatchBeginQ9V2Z6174 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6169 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6175 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809178 .
?targetMotifMatchRegionMatchBeginMF_00809178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809179 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809168, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809168) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809168, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809170, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809170) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809170, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809170) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00809171) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809183 .
?templateMotifSequenceMatchRegionQ9V2Z6188 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6189 .
?templateMotifSequenceMatchBeginQ9V2Z6189 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6184 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6190 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809193 .
?targetMotifMatchRegionMatchBeginMF_00809193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809194 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809183, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809183) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809183, CONCAT('^(?:-*[^-]){', STR(((440 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809185, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809185) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809185, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809185) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00809186) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809198 .
?templateMotifSequenceMatchRegionQ9V2Z6203 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6204 .
?templateMotifSequenceMatchBeginQ9V2Z6204 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6199 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6205 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809208 .
?targetMotifMatchRegionMatchBeginMF_00809208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809209 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809198, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809198) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809198, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809200, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809200) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809200, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809200) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00809201) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809213 .
?templateMotifSequenceMatchRegionQ9V2Z6218 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6219 .
?templateMotifSequenceMatchBeginQ9V2Z6219 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6214 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6220 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809215 .
?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809223 .
?targetMotifMatchRegionMatchBeginMF_00809223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809224 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809213, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809213) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809213, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809215, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809215) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809215, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809215) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_00809216) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809228 .
?templateMotifSequenceMatchRegionQ9V2Z6233 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6234 .
?templateMotifSequenceMatchBeginQ9V2Z6234 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6229 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6235 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809230 .
?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809238 .
?targetMotifMatchRegionMatchBeginMF_00809238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809239 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809228, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809228) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809228, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809230, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809230) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809230, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809230) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) .
BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_00809231) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t242) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch247 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6248 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6250 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809243 .
?templateMotifSequenceMatchRegionQ9V2Z6248 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6249 .
?templateMotifSequenceMatchBeginQ9V2Z6249 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6244 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6250 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch251 faldo:location ?targetMotifMatchRegionMatch252 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809254 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809245 .
?targetMotifMatchRegionMatch252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809253 .
?targetMotifMatchRegionMatchBeginMF_00809253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809246 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809254 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809243, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809243) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809243, CONCAT('^(?:-*[^-]){', STR(((292 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809245, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809245) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809245, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809245) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) .
BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_00809246) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs1t257) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch262 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6263 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6265 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809258 .
?templateMotifSequenceMatchRegionQ9V2Z6263 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6264 .
?templateMotifSequenceMatchBeginQ9V2Z6264 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6259 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6265 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch266 faldo:location ?targetMotifMatchRegionMatch267 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809269 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809260 .
?targetMotifMatchRegionMatch267 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809268 .
?targetMotifMatchRegionMatchBeginMF_00809268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809261 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809269 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809258, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809258) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809258, CONCAT('^(?:-*[^-]){', STR(((429 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809260, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809260) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809260, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809260) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) .
BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_00809261) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs1t272) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'V')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch277 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6278 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6280 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809273 .
?templateMotifSequenceMatchRegionQ9V2Z6278 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6279 .
?templateMotifSequenceMatchBeginQ9V2Z6279 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6274 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6280 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch281 faldo:location ?targetMotifMatchRegionMatch282 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809284 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809275 .
?targetMotifMatchRegionMatch282 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809283 .
?targetMotifMatchRegionMatchBeginMF_00809283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809276 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809284 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809273, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809273) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809273, CONCAT('^(?:-*[^-]){', STR(((439 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1285) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809275, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809275) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809275, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809275) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), '')))), '[^-]', ''))) AS ?step2286) .
BIND(((?step2286 + ?targetMotifMatchRegionMatchBeginPositionMF_00809276) - 1) AS ?thisPositionOn95) .
BIND(?thisPositionOn95 AS ?thisPositionOn96) .
BIND(?this AS ?pfs1t287) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse93) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a91')) AS ?annotation91) .
BIND(?this AS ?pfs90) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch292 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6293 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6295 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2Z6MF_00809288 .
?templateMotifSequenceMatchRegionQ9V2Z6293 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6294 .
?templateMotifSequenceMatchBeginQ9V2Z6294 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6289 ;
faldo:reference isoform:Q9V2Z6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2Z6295 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
?targetMotifMatch296 faldo:location ?targetMotifMatchRegionMatch297 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809299 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809290 .
?targetMotifMatchRegionMatch297 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809298 .
?targetMotifMatchRegionMatchBeginMF_00809298 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809291 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00809299 edam:has_input signature:MF_00809 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809288, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809288) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809288, CONCAT('^(?:-*[^-]){', STR(((440 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1300) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809290, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809290) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809290, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809290) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), '')))), '[^-]', ''))) AS ?step2301) .
BIND(((?step2301 + ?targetMotifMatchRegionMatchBeginPositionMF_00809291) - 1) AS ?thisPositionOn102) .
BIND(?thisPositionOn102 AS ?thisPositionOn103) .
BIND(?this AS ?pfs1t302) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse100) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00809a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
}
"xsd:string |
