| http://purl.uniprot.org/unirules/MF_01038#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:364714 up:source unirule:MF_01038 .
_:364715 up:source unirule:MF_01038 .
_:364716 up:source unirule:MF_01038 .
_:364717 up:source unirule:MF_01038 .
_:364718 up:source unirule:MF_01038 .
_:364719 up:source unirule:MF_01038 .
_:364720 up:source unirule:MF_01038 .
_:364721 up:source unirule:MF_01038 .
_:364722 up:source unirule:MF_01038 .
_:364723 up:source unirule:MF_01038 .
_:364724 up:source unirule:MF_01038 .
_:364725 up:source unirule:MF_01038 .
_:364726 up:source unirule:MF_01038 .
_:364727 up:source unirule:MF_01038 .
_:364728 up:source unirule:MF_01038 .
_:364729 up:source unirule:MF_01038 .
_:364730 up:source unirule:MF_01038 .
_:364731 up:source unirule:MF_01038 .
_:364732 up:source unirule:MF_01038 .
_:364733 up:source unirule:MF_01038 .
_:364734 up:source unirule:MF_01038 .
_:364735 up:source unirule:MF_01038 .
_:364736 up:source unirule:MF_01038 .
_:364737 up:source unirule:MF_01038 .
_:364738 up:source unirule:MF_01038 .
_:364739 up:source unirule:MF_01038 .
_:364740 up:source unirule:MF_01038 .
_:364741 up:source unirule:MF_01038 .
_:364742 up:source unirule:MF_01038 .
_:364743 up:source unirule:MF_01038 .
?this up:annotation ?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0004619 ,
GO:0006096 ,
keyword:324 ,
keyword:413 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.4.2.12' ;
up:fullName '2,3-bisphosphoglycerate-independent phosphoglycerate mutase' ;
up:shortName 'BPG-independent PGAM' ,
'Phosphoglyceromutase' ,
'iPGM' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'gpmI' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 3/5.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the BPG-independent phosphoglycerate mutase family.' .
?case6 up:classifiedWith GO:0030145 ,
keyword:464 ,
keyword:479 .
?case7 up:classifiedWith GO:0009507 .
?case9 up:classifiedWith keyword:749 .
?case11 up:classifiedWith keyword:597 .
?pfs12 up:annotation ?annotation13 ,
?annotation19 ,
?annotation25 ,
?annotation31 ,
?annotation37 ,
?annotation43 ,
?annotation49 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:29035 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:29035 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:29035 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29035 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:29035 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:29035 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:29035 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphotyrosine' .
?pfsb57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf ?molecule66 .
?molecule66 rdfs:label 'substrate' .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf ?molecule74 .
?molecule74 rdfs:label 'substrate' .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Phosphoserine intermediate' .
?pfsb79 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf ?molecule88 .
?molecule88 rdfs:label 'substrate' .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation .
?pfsb93 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf ?molecule96 .
?molecule96 rdfs:label 'substrate' .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
up:ligand ?ligand103 ;
rdf:type up:Binding_Site_Annotation .
?pfsb101 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand103 rdfs:subClassOf ?molecule104 .
?molecule104 rdfs:label 'substrate' .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf ?molecule112 .
?molecule112 rdfs:label 'substrate' .
_:364744 a rdf:Statement ;
up:attribution _:364714 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:364745 a rdf:Statement ;
up:attribution _:364715 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:364746 a rdf:Statement ;
up:attribution _:364716 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:364747 a rdf:Statement ;
up:attribution _:364717 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:364748 a rdf:Statement ;
up:attribution _:364718 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:364749 a rdf:Statement ;
up:attribution _:364719 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:364750 a rdf:Statement ;
up:attribution _:364720 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:324 .
_:364751 a rdf:Statement ;
up:attribution _:364721 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004619 .
_:364752 a rdf:Statement ;
up:attribution _:364722 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
_:364753 a rdf:Statement ;
up:attribution _:364723 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:364754 a rdf:Statement ;
up:attribution _:364724 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:364755 a rdf:Statement ;
up:attribution _:364725 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:364756 a rdf:Statement ;
up:attribution _:364726 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
_:364757 a rdf:Statement ;
up:attribution _:364727 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:749 .
_:364758 a rdf:Statement ;
up:attribution _:364728 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:364759 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:364760 a rdf:Statement ;
up:attribution _:364729 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:364761 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:364762 a rdf:Statement ;
up:attribution _:364730 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:364763 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:364764 a rdf:Statement ;
up:attribution _:364731 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:364765 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:364766 a rdf:Statement ;
up:attribution _:364732 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:364767 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:364768 a rdf:Statement ;
up:attribution _:364733 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:364769 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:364770 a rdf:Statement ;
up:attribution _:364734 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:364771 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:364772 a rdf:Statement ;
up:attribution _:364735 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:364773 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:364774 a rdf:Statement ;
up:attribution _:364736 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:364775 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:364776 a rdf:Statement ;
up:attribution _:364737 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:364777 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:364778 a rdf:Statement ;
up:attribution _:364738 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:364779 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:364780 a rdf:Statement ;
up:attribution _:364739 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:364781 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:364782 a rdf:Statement ;
up:attribution _:364740 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:364783 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:364784 a rdf:Statement ;
up:attribution _:364741 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:364785 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:364786 a rdf:Statement ;
up:attribution _:364742 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:364787 a rdf:Statement ;
up:source unirule:MF_01038 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:364788 a rdf:Statement ;
up:attribution _:364743 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01038
#Rule MF_01038 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-01-14
{
VALUES ?supertaxon115 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01038 .
?thisOrganism rdfs:subClassOf+ ?supertaxon115 .
} UNION {
?this rdfs:seeAlso signature:MF_01038 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_01038a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01038a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01038a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01038a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionQ9X519121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X519123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X519MF_01038116 .
?templateMotifSequenceMatchRegionQ9X519121 faldo:begin ?templateMotifSequenceMatchBeginQ9X519122 .
?templateMotifSequenceMatchBeginQ9X519122 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X519117 ;
faldo:reference isoform:Q9X519-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X519123 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01038127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X519MF_01038118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01038126 .
?targetMotifMatchRegionMatchBeginMF_01038126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01038119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01038127 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038116, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038116) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038116, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionQ9X519117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01038119) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038116, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038116) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038116, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionQ9X519117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01038119) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'S')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038116, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038116) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038116, CONCAT('^(?:-*[^-]){', STR(((403 - ?templateMotifSequenceMatchBeginPositionQ9X519117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_01038119) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038116, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038116) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038116, CONCAT('^(?:-*[^-]){', STR(((407 - ?templateMotifSequenceMatchBeginPositionQ9X519117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_01038119) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038116, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038116) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038116, CONCAT('^(?:-*[^-]){', STR(((444 - ?templateMotifSequenceMatchBeginPositionQ9X519117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01038119) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038116, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038116) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038116, CONCAT('^(?:-*[^-]){', STR(((445 - ?templateMotifSequenceMatchBeginPositionQ9X519117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01038119) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038116, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038116) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038116, CONCAT('^(?:-*[^-]){', STR(((462 - ?templateMotifSequenceMatchBeginPositionQ9X519117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038118, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01038119) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'H')) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP39773154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39773156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39773MF_01038149 .
?templateMotifSequenceMatchRegionP39773154 faldo:begin ?templateMotifSequenceMatchBeginP39773155 .
?templateMotifSequenceMatchBeginP39773155 faldo:position ?templateMotifSequenceMatchBeginPositionP39773150 ;
faldo:reference isoform:P39773-1 .
?templateMotifSequenceProfileAlignmentOperationP39773156 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01038160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39773MF_01038151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01038159 .
?targetMotifMatchRegionMatchBeginMF_01038159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01038152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01038160 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_15) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:186817 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39773MF_01038149, 1, (STRLEN(?templateMotifCigarP39773MF_01038149) - STRLEN(REPLACE(?templateMotifCigarP39773MF_01038149, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP39773150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39773MF_01038151, 1, (STRLEN(?targetMotifMatchCigarP39773MF_01038151) - STRLEN(REPLACE(?targetMotifMatchCigarP39773MF_01038151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39773MF_01038151, 1, (STRLEN(?targetMotifMatchCigarP39773MF_01038151) - STRLEN(REPLACE(?targetMotifMatchCigarP39773MF_01038151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01038152) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs2t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01038a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionQ9X519169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X519171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X519MF_01038164 .
?templateMotifSequenceMatchRegionQ9X519169 faldo:begin ?templateMotifSequenceMatchBeginQ9X519170 .
?templateMotifSequenceMatchBeginQ9X519170 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X519165 ;
faldo:reference isoform:Q9X519-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X519171 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01038175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X519MF_01038166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01038174 .
?targetMotifMatchRegionMatchBeginMF_01038174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01038167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01038175 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038164, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038164) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038164, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionQ9X519165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038166, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038166) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038166, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038166) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_01038167) - 1) AS ?thisPositionOn67) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038164, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038164) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038164, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionQ9X519165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038166, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038166) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038166, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038166) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_01038167) - 1) AS ?thisPositionOn68) .
BIND(?this AS ?pfs3t180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, (?thisPositionOn68 - ?thisPositionOn67)) = 'RD')) .
BIND(URI(CONCAT(STR(?this), '#MF_01038a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionQ9X519186 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X519188 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X519MF_01038181 .
?templateMotifSequenceMatchRegionQ9X519186 faldo:begin ?templateMotifSequenceMatchBeginQ9X519187 .
?templateMotifSequenceMatchBeginQ9X519187 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X519182 ;
faldo:reference isoform:Q9X519-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X519188 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01038192 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X519MF_01038183 .
?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01038191 .
?targetMotifMatchRegionMatchBeginMF_01038191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01038184 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01038192 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038181, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038181) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038181, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionQ9X519182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038183, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038183) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038183, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038183) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) .
BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_01038184) - 1) AS ?thisPositionOn75) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038181, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038181) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038181, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionQ9X519182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038183, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038183) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038183, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038183) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_01038184) - 1) AS ?thisPositionOn76) .
BIND(?this AS ?pfs3t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse72) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn75, (?thisPositionOn76 - ?thisPositionOn75)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01038a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionQ9X519203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X519205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X519MF_01038198 .
?templateMotifSequenceMatchRegionQ9X519203 faldo:begin ?templateMotifSequenceMatchBeginQ9X519204 .
?templateMotifSequenceMatchBeginQ9X519204 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X519199 ;
faldo:reference isoform:Q9X519-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X519205 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01038209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X519MF_01038200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01038208 .
?targetMotifMatchRegionMatchBeginMF_01038208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01038201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01038209 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038198, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038198) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038198, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionQ9X519199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038200, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038200) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038200, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038200) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_01038201) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs3t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01038a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionQ9X519218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X519220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X519MF_01038213 .
?templateMotifSequenceMatchRegionQ9X519218 faldo:begin ?templateMotifSequenceMatchBeginQ9X519219 .
?templateMotifSequenceMatchBeginQ9X519219 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X519214 ;
faldo:reference isoform:Q9X519-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X519220 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01038224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X519MF_01038215 .
?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01038223 .
?targetMotifMatchRegionMatchBeginMF_01038223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01038216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01038224 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038213, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038213) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038213, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionQ9X519214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038215, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038215) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038215, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038215) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_01038216) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs3t227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse86) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01038a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionQ9X519233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X519235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X519MF_01038228 .
?templateMotifSequenceMatchRegionQ9X519233 faldo:begin ?templateMotifSequenceMatchBeginQ9X519234 .
?templateMotifSequenceMatchBeginQ9X519234 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X519229 ;
faldo:reference isoform:Q9X519-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X519235 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01038239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X519MF_01038230 .
?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01038238 .
?targetMotifMatchRegionMatchBeginMF_01038238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01038231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01038239 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038228, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038228) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038228, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionQ9X519229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038230, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038230) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038230, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038230) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) .
BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_01038231) - 1) AS ?thisPositionOn97) .
BIND(?thisPositionOn97 AS ?thisPositionOn98) .
BIND(?this AS ?pfs3t242) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01038a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch247 faldo:location ?templateMotifSequenceMatchRegionQ9X519248 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X519250 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X519MF_01038243 .
?templateMotifSequenceMatchRegionQ9X519248 faldo:begin ?templateMotifSequenceMatchBeginQ9X519249 .
?templateMotifSequenceMatchBeginQ9X519249 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X519244 ;
faldo:reference isoform:Q9X519-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X519250 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
?targetMotifMatch251 faldo:location ?targetMotifMatchRegionMatch252 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01038254 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X519MF_01038245 .
?targetMotifMatchRegionMatch252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01038253 .
?targetMotifMatchRegionMatchBeginMF_01038253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01038246 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01038254 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038243, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038243) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038243, CONCAT('^(?:-*[^-]){', STR(((191 - ?templateMotifSequenceMatchBeginPositionQ9X519244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038245, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038245) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038245, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038245) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) .
BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_01038246) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs3t257) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse102) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01038a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch262 faldo:location ?templateMotifSequenceMatchRegionQ9X519263 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X519265 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X519MF_01038258 .
?templateMotifSequenceMatchRegionQ9X519263 faldo:begin ?templateMotifSequenceMatchBeginQ9X519264 .
?templateMotifSequenceMatchBeginQ9X519264 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X519259 ;
faldo:reference isoform:Q9X519-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X519265 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
?targetMotifMatch266 faldo:location ?targetMotifMatchRegionMatch267 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01038269 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X519MF_01038260 .
?targetMotifMatchRegionMatch267 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01038268 .
?targetMotifMatchRegionMatchBeginMF_01038268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01038261 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01038269 edam:has_input signature:MF_01038 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X519MF_01038258, 1, (STRLEN(?templateMotifCigarQ9X519MF_01038258) - STRLEN(REPLACE(?templateMotifCigarQ9X519MF_01038258, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionQ9X519259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038260, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038260) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X519MF_01038260, 1, (STRLEN(?targetMotifMatchCigarQ9X519MF_01038260) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X519MF_01038260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) .
BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_01038261) - 1) AS ?thisPositionOn113) .
BIND(?thisPositionOn113 AS ?thisPositionOn114) .
BIND(?this AS ?pfs3t272) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01038a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag273) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag273, ?UNBOUND_VARIABLE) AS ?case6) .
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:186817 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:186817 .
})) .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:186817 .
BIND(?this AS ?caseWithTag274) .
}
BIND(IF(BOUND(?tagFT_15), ?caseWithTag274, ?UNBOUND_VARIABLE) AS ?case11) .
}
"xsd:string |
