| http://purl.uniprot.org/unirules/MF_01123#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:391095 up:source unirule:MF_01123 .
_:391096 up:source unirule:MF_01123 .
_:391097 up:source unirule:MF_01123 .
_:391098 up:source unirule:MF_01123 .
_:391099 up:source unirule:MF_01123 .
_:391100 up:source unirule:MF_01123 .
_:391101 up:source unirule:MF_01123 .
_:391102 up:source unirule:MF_01123 .
_:391103 up:source unirule:MF_01123 .
_:391104 up:source unirule:MF_01123 .
_:391105 up:source unirule:MF_01123 .
_:391106 up:source unirule:MF_01123 .
_:391107 up:source unirule:MF_01123 .
_:391108 up:source unirule:MF_01123 .
_:391109 up:source unirule:MF_01123 .
_:391110 up:source unirule:MF_01123 .
_:391111 up:source unirule:MF_01123 .
_:391112 up:source unirule:MF_01123 .
_:391113 up:source unirule:MF_01123 .
_:391114 up:source unirule:MF_01123 .
_:391115 up:source unirule:MF_01123 .
_:391116 up:source unirule:MF_01123 .
_:391117 up:source unirule:MF_01123 .
_:391118 up:source unirule:MF_01123 .
_:391119 up:source unirule:MF_01123 .
_:391120 up:source unirule:MF_01123 .
_:391121 up:source unirule:MF_01123 .
_:391122 up:source unirule:MF_01123 .
_:391123 up:source unirule:MF_01123 .
_:391124 up:source unirule:MF_01123 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0003987 ,
keyword:436 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:67 ,
keyword:7 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.2.1.1' ;
up:fullName 'Acetyl-coenzyme A synthetase' ;
up:shortName 'AcCoA synthetase' ,
'Acs' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Acetate--CoA ligase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Acyl-activating enzyme' ;
rdf:type up:Structured_Name .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:PTM_Annotation ;
rdfs:comment 'Acetylated. Deacetylation by the SIR2-homolog deacetylase activates the enzyme.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ATP-dependent AMP-binding enzyme family.' .
?case8 up:classifiedWith GO:0006935 ,
GO:0019427 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:30616 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:30616 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:57287 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:18420 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:18420 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:18420 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:57287 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:57287 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:30616 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf chebi:30616 .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf chebi:57287 .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
up:ligand ?ligand91 ;
rdf:type up:Binding_Site_Annotation .
?pfsb89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand91 rdfs:subClassOf chebi:30616 .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
up:ligand ?ligand98 ;
rdf:type up:Binding_Site_Annotation .
?pfsb96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?ligand98 rdfs:subClassOf chebi:57287 .
?pfs101 up:annotation ?annotation102 .
?annotation102 faldo:begin ?pfsb103 ;
faldo:end ?pfse104 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb103 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse104 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
_:391125 a rdf:Statement ;
up:attribution _:391095 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:391126 a rdf:Statement ;
up:attribution _:391096 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:391127 a rdf:Statement ;
up:attribution _:391097 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:391128 a rdf:Statement ;
up:attribution _:391098 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:391129 a rdf:Statement ;
up:attribution _:391099 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:391130 a rdf:Statement ;
up:attribution _:391100 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:391131 a rdf:Statement ;
up:attribution _:391101 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:391132 a rdf:Statement ;
up:attribution _:391102 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:391133 a rdf:Statement ;
up:attribution _:391103 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:391134 a rdf:Statement ;
up:attribution _:391104 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:391135 a rdf:Statement ;
up:attribution _:391105 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:391136 a rdf:Statement ;
up:attribution _:391106 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:391137 a rdf:Statement ;
up:attribution _:391107 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:391138 a rdf:Statement ;
up:attribution _:391108 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003987 .
_:391139 a rdf:Statement ;
up:attribution _:391109 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019427 .
_:391140 a rdf:Statement ;
up:attribution _:391110 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006935 .
_:391141 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:391142 a rdf:Statement ;
up:attribution _:391111 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:391143 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:391144 a rdf:Statement ;
up:attribution _:391112 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:391145 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:391146 a rdf:Statement ;
up:attribution _:391113 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:391147 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:391148 a rdf:Statement ;
up:attribution _:391114 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:391149 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:391150 a rdf:Statement ;
up:attribution _:391115 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:391151 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:391152 a rdf:Statement ;
up:attribution _:391116 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:391153 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:391154 a rdf:Statement ;
up:attribution _:391117 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:391155 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:391156 a rdf:Statement ;
up:attribution _:391118 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:391157 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:391158 a rdf:Statement ;
up:attribution _:391119 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:391159 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:391160 a rdf:Statement ;
up:attribution _:391120 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:391161 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:391162 a rdf:Statement ;
up:attribution _:391121 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:391163 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:391164 a rdf:Statement ;
up:attribution _:391122 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:391165 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:391166 a rdf:Statement ;
up:attribution _:391123 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:391167 a rdf:Statement ;
up:source unirule:MF_01123 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:391168 a rdf:Statement ;
up:attribution _:391124 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01123
#Rule MF_01123 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon107 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01123 .
?thisOrganism rdfs:subClassOf+ ?supertaxon107 .
BIND(URI(CONCAT(STR(?this), '#MF_01123a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123108 .
?templateMotifSequenceMatchRegionQ8ZKF6113 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6114 .
?templateMotifSequenceMatchBeginQ8ZKF6114 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6109 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6115 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123118 .
?targetMotifMatchRegionMatchBeginMF_01123118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123119 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123108, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123108) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123108, CONCAT('^(?:-*[^-]){', STR(((387 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123110, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123110) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123110, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123110) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_01123111) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123108, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123108) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123108, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123110, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123110) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123110, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123110) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_01123111) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('G[ES][PG]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123125 .
?templateMotifSequenceMatchRegionQ8ZKF6130 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6131 .
?templateMotifSequenceMatchBeginQ8ZKF6131 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6126 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6132 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123135 .
?targetMotifMatchRegionMatchBeginMF_01123135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123136 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123125, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123125) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123125, CONCAT('^(?:-*[^-]){', STR(((411 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123127, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123127) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123127, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123127) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_01123128) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123125, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123125) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123125, CONCAT('^(?:-*[^-]){', STR(((416 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123127, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123127) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123127, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123127) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_01123128) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('[DS]T[WF]W[QM]T', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123142 .
?templateMotifSequenceMatchRegionQ8ZKF6147 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6148 .
?templateMotifSequenceMatchBeginQ8ZKF6148 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6143 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6149 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123152 .
?targetMotifMatchRegionMatchBeginMF_01123152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123153 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123142, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123142) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123142, CONCAT('^(?:-*[^-]){', STR(((191 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123144, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123144) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123144, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123144) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_01123145) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123142, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123142) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123142, CONCAT('^(?:-*[^-]){', STR(((194 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123144, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123144) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123144, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123144) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_01123145) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('[RY][AGRKN][GSNDP][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123159 .
?templateMotifSequenceMatchRegionQ8ZKF6164 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6165 .
?templateMotifSequenceMatchBeginQ8ZKF6165 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6160 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6166 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123169 .
?targetMotifMatchRegionMatchBeginMF_01123169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123170 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123159, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123159) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123159, CONCAT('^(?:-*[^-]){', STR(((537 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123161, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123161) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123161, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123161) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_01123162) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'V')) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123174 .
?templateMotifSequenceMatchRegionQ8ZKF6179 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6180 .
?templateMotifSequenceMatchBeginQ8ZKF6180 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6175 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6181 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123176 .
?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123184 .
?targetMotifMatchRegionMatchBeginMF_01123184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123185 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123174, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123174) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123174, CONCAT('^(?:-*[^-]){', STR(((539 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123176, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123176) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123176, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123176) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_01123177) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER (REGEX('[HF]', SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123189 .
?templateMotifSequenceMatchRegionQ8ZKF6194 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6195 .
?templateMotifSequenceMatchBeginQ8ZKF6195 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6190 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6196 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123200 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123191 .
?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123199 .
?targetMotifMatchRegionMatchBeginMF_01123199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123192 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123200 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123189, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123189) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123189, CONCAT('^(?:-*[^-]){', STR(((542 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123191, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123191) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123191, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123191) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_01123192) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t203) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6209 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6211 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123204 .
?templateMotifSequenceMatchRegionQ8ZKF6209 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6210 .
?templateMotifSequenceMatchBeginQ8ZKF6210 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6205 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6211 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123215 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123206 .
?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123214 .
?targetMotifMatchRegionMatchBeginMF_01123214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123207 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123215 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123204, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123204) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123204, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123206, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123206) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123206, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123206) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_01123207) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6224 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6226 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123219 .
?templateMotifSequenceMatchRegionQ8ZKF6224 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6225 .
?templateMotifSequenceMatchBeginQ8ZKF6225 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6220 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6226 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123230 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123221 .
?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123229 .
?targetMotifMatchRegionMatchBeginMF_01123229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123222 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123230 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123219, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123219) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123219, CONCAT('^(?:-*[^-]){', STR(((335 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123221, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123221) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123221, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123221) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_01123222) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123234 .
?templateMotifSequenceMatchRegionQ8ZKF6239 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6240 .
?templateMotifSequenceMatchBeginQ8ZKF6240 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6235 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6241 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123244 .
?targetMotifMatchRegionMatchBeginMF_01123244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123245 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123234, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123234) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123234, CONCAT('^(?:-*[^-]){', STR(((500 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123236, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123236) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123236, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123236) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_01123237) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t248) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6254 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6256 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123249 .
?templateMotifSequenceMatchRegionQ8ZKF6254 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6255 .
?templateMotifSequenceMatchBeginQ8ZKF6255 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6250 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6256 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123260 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123251 .
?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123259 .
?targetMotifMatchRegionMatchBeginMF_01123259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123252 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123260 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123249, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123249) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123249, CONCAT('^(?:-*[^-]){', STR(((515 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123251, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123251) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123251, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123251) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) .
BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_01123252) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t263) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch268 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6269 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6271 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123264 .
?templateMotifSequenceMatchRegionQ8ZKF6269 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6270 .
?templateMotifSequenceMatchBeginQ8ZKF6270 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6265 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6271 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch272 faldo:location ?targetMotifMatchRegionMatch273 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123275 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123266 .
?targetMotifMatchRegionMatch273 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123274 .
?targetMotifMatchRegionMatchBeginMF_01123274 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123267 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123275 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123264, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123264) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123264, CONCAT('^(?:-*[^-]){', STR(((523 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123266, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123266) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123266, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123266) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) .
BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_01123267) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t278) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch283 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6284 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6286 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123279 .
?templateMotifSequenceMatchRegionQ8ZKF6284 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6285 .
?templateMotifSequenceMatchBeginQ8ZKF6285 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6280 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6286 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch287 faldo:location ?targetMotifMatchRegionMatch288 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123290 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123281 .
?targetMotifMatchRegionMatch288 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123289 .
?targetMotifMatchRegionMatchBeginMF_01123289 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123282 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123290 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123279, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123279) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123279, CONCAT('^(?:-*[^-]){', STR(((526 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1291) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123281, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123281) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123281, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123281) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), '')))), '[^-]', ''))) AS ?step2292) .
BIND(((?step2292 + ?targetMotifMatchRegionMatchBeginPositionMF_01123282) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t293) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch298 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6299 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6301 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123294 .
?templateMotifSequenceMatchRegionQ8ZKF6299 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6300 .
?templateMotifSequenceMatchBeginQ8ZKF6300 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6295 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6301 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch302 faldo:location ?targetMotifMatchRegionMatch303 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123305 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123296 .
?targetMotifMatchRegionMatch303 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123304 .
?targetMotifMatchRegionMatchBeginMF_01123304 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123297 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123305 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123294, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123294) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123294, CONCAT('^(?:-*[^-]){', STR(((584 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6295) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1306) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123296, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123296) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123296, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1306), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123296, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123296) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123296, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1306), '}'), '')))), '[^-]', ''))) AS ?step2307) .
BIND(((?step2307 + ?targetMotifMatchRegionMatchBeginPositionMF_01123297) - 1) AS ?thisPositionOn99) .
BIND(?thisPositionOn99 AS ?thisPositionOn100) .
BIND(?this AS ?pfs1t308) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch313 faldo:location ?templateMotifSequenceMatchRegionQ8ZKF6314 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKF6316 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKF6MF_01123309 .
?templateMotifSequenceMatchRegionQ8ZKF6314 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKF6315 .
?templateMotifSequenceMatchBeginQ8ZKF6315 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKF6310 ;
faldo:reference isoform:Q8ZKF6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKF6316 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch317 faldo:location ?targetMotifMatchRegionMatch318 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01123320 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKF6MF_01123311 .
?targetMotifMatchRegionMatch318 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01123319 .
?targetMotifMatchRegionMatchBeginMF_01123319 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01123312 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01123320 edam:has_input signature:MF_01123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKF6MF_01123309, 1, (STRLEN(?templateMotifCigarQ8ZKF6MF_01123309) - STRLEN(REPLACE(?templateMotifCigarQ8ZKF6MF_01123309, CONCAT('^(?:-*[^-]){', STR(((609 - ?templateMotifSequenceMatchBeginPositionQ8ZKF6310) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1321) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123311, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123311) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123311, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1321), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKF6MF_01123311, 1, (STRLEN(?targetMotifMatchCigarQ8ZKF6MF_01123311) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKF6MF_01123311, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1321), '}'), '')))), '[^-]', ''))) AS ?step2322) .
BIND(((?step2322 + ?targetMotifMatchRegionMatchBeginPositionMF_01123312) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs1t323) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse104) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01123a102')) AS ?annotation102) .
BIND(?this AS ?pfs101) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:91347 .
})) .
BIND(?this AS ?case9) .
}
}
"xsd:string |
