| http://purl.uniprot.org/unirules/MF_01252#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:440987 up:source unirule:MF_01252 .
_:440988 up:source unirule:MF_01252 .
_:440989 up:source unirule:MF_01252 .
_:440990 up:source unirule:MF_01252 .
_:440991 up:source unirule:MF_01252 .
_:440992 up:source unirule:MF_01252 .
_:440993 up:source unirule:MF_01252 .
_:440994 up:source unirule:MF_01252 .
_:440995 up:source unirule:MF_01252 .
_:440996 up:source unirule:MF_01252 .
_:440997 up:source unirule:MF_01252 .
_:440998 up:source unirule:MF_01252 .
_:440999 up:source unirule:MF_01252 .
_:441000 up:source unirule:MF_01252 .
_:441001 up:source unirule:MF_01252 .
_:441002 up:source unirule:MF_01252 .
_:441003 up:source unirule:MF_01252 .
_:441004 up:source unirule:MF_01252 .
_:441005 up:source unirule:MF_01252 .
_:441006 up:source unirule:MF_01252 .
_:441007 up:source unirule:MF_01252 .
_:441008 up:source unirule:MF_01252 .
_:441009 up:source unirule:MF_01252 .
_:441010 up:source unirule:MF_01252 .
_:441011 up:source unirule:MF_01252 .
_:441012 up:source unirule:MF_01252 .
_:441013 up:source unirule:MF_01252 .
_:441014 up:source unirule:MF_01252 .
_:441015 up:source unirule:MF_01252 .
_:441016 up:source unirule:MF_01252 .
_:441017 up:source unirule:MF_01252 .
_:441018 up:source unirule:MF_01252 .
_:441019 up:source unirule:MF_01252 .
_:441020 up:source unirule:MF_01252 .
_:441021 up:source unirule:MF_01252 .
_:441022 up:source unirule:MF_01252 .
_:441023 up:source unirule:MF_01252 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation13 ;
up:classifiedWith GO:0005344 ,
GO:0008941 ,
GO:0015671 ,
keyword:274 ,
keyword:285 ,
keyword:349 ,
keyword:408 ,
keyword:479 ,
keyword:520 ,
keyword:521 ,
keyword:560 ,
keyword:561 ,
keyword:813 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Flavohemoprotein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Flavohemoglobin' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Hemoglobin-like protein' ;
rdf:type up:Structured_Name .
?name3 up:ecName '1.14.12.17' ;
up:fullName 'Nitric oxide dioxygenase' ;
up:shortName 'NO oxygenase' ,
'NOD' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'hmp' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 up:cofactor chebi:60344 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 heme b (iron(II)-protoporphyrin IX) group per subunit.' .
?annotation10 up:cofactor chebi:57692 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 FAD per subunit.' .
?annotation11 a up:Domain_Annotation ;
rdfs:comment 'Consists of two distinct domains; an N-terminal heme-containing oxygen-binding domain and a C-terminal reductase domain with binding sites for FAD and NAD(P)H.' .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the globin family. Two-domain flavohemoproteins subfamily.' .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.' .
?case14 up:classifiedWith keyword:216 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Reductase' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:57692 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:58349 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:57692 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'proximal binding residue' .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 up:ligandPart ?ligand58 ;
rdfs:subClassOf chebi:18248 ,
chebi:60344 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:57692 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Involved in heme-bound ligand stabilization and O-O bond activation' .
?pfsb70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Influences the redox potential of the prosthetic heme and FAD groups' .
?pfsb76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Influences the redox potential of the prosthetic heme and FAD groups' .
?pfsb82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
_:441024 a rdf:Statement ;
up:attribution _:440987 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:441025 a rdf:Statement ;
up:attribution _:440988 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:441026 a rdf:Statement ;
up:attribution _:440989 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:441027 a rdf:Statement ;
up:attribution _:440990 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:441028 a rdf:Statement ;
up:attribution _:440991 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:441029 a rdf:Statement ;
up:attribution _:440992 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:441030 a rdf:Statement ;
up:attribution _:440993 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:441031 a rdf:Statement ;
up:attribution _:440994 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:441032 a rdf:Statement ;
up:attribution _:440995 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:441033 a rdf:Statement ;
up:attribution _:440996 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:441034 a rdf:Statement ;
up:attribution _:440997 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:441035 a rdf:Statement ;
up:attribution _:440998 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:441036 a rdf:Statement ;
up:attribution _:440999 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:441037 a rdf:Statement ;
up:attribution _:441000 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:441038 a rdf:Statement ;
up:attribution _:441001 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:349 .
_:441039 a rdf:Statement ;
up:attribution _:441002 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:441040 a rdf:Statement ;
up:attribution _:441003 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:441041 a rdf:Statement ;
up:attribution _:441004 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:441042 a rdf:Statement ;
up:attribution _:441005 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:441043 a rdf:Statement ;
up:attribution _:441006 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:441044 a rdf:Statement ;
up:attribution _:441007 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:561 .
_:441045 a rdf:Statement ;
up:attribution _:441008 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:441046 a rdf:Statement ;
up:attribution _:441009 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005344 .
_:441047 a rdf:Statement ;
up:attribution _:441010 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008941 .
_:441048 a rdf:Statement ;
up:attribution _:441011 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015671 .
_:441049 a rdf:Statement ;
up:attribution _:441012 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:216 .
_:441050 a rdf:Statement ;
up:source unirule:MF_01252 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:441051 a rdf:Statement ;
up:attribution _:441013 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:441052 a rdf:Statement ;
up:source unirule:MF_01252 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:441053 a rdf:Statement ;
up:attribution _:441014 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:441054 a rdf:Statement ;
up:source unirule:MF_01252 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:441055 a rdf:Statement ;
up:attribution _:441015 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:441056 a rdf:Statement ;
up:source unirule:MF_01252 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:441057 a rdf:Statement ;
up:attribution _:441016 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:441058 a rdf:Statement ;
up:source unirule:MF_01252 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:441059 a rdf:Statement ;
up:attribution _:441017 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:441060 a rdf:Statement ;
up:source unirule:MF_01252 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:441061 a rdf:Statement ;
up:attribution _:441018 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:441062 a rdf:Statement ;
up:source unirule:MF_01252 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:441063 a rdf:Statement ;
up:attribution _:441019 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:441064 a rdf:Statement ;
up:source unirule:MF_01252 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:441065 a rdf:Statement ;
up:attribution _:441020 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:441066 a rdf:Statement ;
up:source unirule:MF_01252 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:441067 a rdf:Statement ;
up:attribution _:441021 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:441068 a rdf:Statement ;
up:source unirule:MF_01252 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:441069 a rdf:Statement ;
up:attribution _:441022 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:441070 a rdf:Statement ;
up:source unirule:MF_01252 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:441071 a rdf:Statement ;
up:attribution _:441023 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01252
#Rule MF_01252 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01252 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01252a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionP2423291 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2423293 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24232MF_0125286 .
?templateMotifSequenceMatchRegionP2423291 faldo:begin ?templateMotifSequenceMatchBeginP2423292 .
?templateMotifSequenceMatchBeginP2423292 faldo:position ?templateMotifSequenceMatchBeginPositionP2423287 ;
faldo:reference isoform:P24232-1 .
?templateMotifSequenceProfileAlignmentOperationP2423293 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0125297 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24232MF_0125288 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0125296 .
?targetMotifMatchRegionMatchBeginMF_0125296 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0125289 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0125297 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_0125286, 1, (STRLEN(?templateMotifCigarP24232MF_0125286) - STRLEN(REPLACE(?templateMotifCigarP24232MF_0125286, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP2423287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_0125288, 1, (STRLEN(?targetMotifMatchCigarP24232MF_0125288) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_0125288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_0125288, 1, (STRLEN(?targetMotifMatchCigarP24232MF_0125288) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_0125288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0125289) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((BOUND(?thisPositionOn19) && BOUND(?thisPositionOn20))) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP24232106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24232MF_01252101 .
?templateMotifSequenceMatchRegionP24232106 faldo:begin ?templateMotifSequenceMatchBeginP24232107 .
?templateMotifSequenceMatchBeginP24232107 faldo:position ?templateMotifSequenceMatchBeginPositionP24232102 ;
faldo:reference isoform:P24232-1 .
?templateMotifSequenceProfileAlignmentOperationP24232108 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24232MF_01252103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252111 .
?targetMotifMatchRegionMatchBeginMF_01252111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01252112 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252101, 1, (STRLEN(?templateMotifCigarP24232MF_01252101) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252101, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionP24232102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252103, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252103) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252103, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252103) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01252104) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252101, 1, (STRLEN(?templateMotifCigarP24232MF_01252101) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252101, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionP24232102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252103, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252103) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252103, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252103) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_01252104) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER (REGEX('R[QN]YS', SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP24232123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24232MF_01252118 .
?templateMotifSequenceMatchRegionP24232123 faldo:begin ?templateMotifSequenceMatchBeginP24232124 .
?templateMotifSequenceMatchBeginP24232124 faldo:position ?templateMotifSequenceMatchBeginPositionP24232119 ;
faldo:reference isoform:P24232-1 .
?templateMotifSequenceProfileAlignmentOperationP24232125 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24232MF_01252120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252128 .
?targetMotifMatchRegionMatchBeginMF_01252128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01252129 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252118, 1, (STRLEN(?templateMotifCigarP24232MF_01252118) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252118, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionP24232119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252120, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252120) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252120, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252120) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_01252121) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252118, 1, (STRLEN(?templateMotifCigarP24232MF_01252118) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252118, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP24232119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252120, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252120) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252120, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252120) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01252121) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER (REGEX('G[VI]G[QILAV]TP', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP24232140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24232MF_01252135 .
?templateMotifSequenceMatchRegionP24232140 faldo:begin ?templateMotifSequenceMatchBeginP24232141 .
?templateMotifSequenceMatchBeginP24232141 faldo:position ?templateMotifSequenceMatchBeginPositionP24232136 ;
faldo:reference isoform:P24232-1 .
?templateMotifSequenceProfileAlignmentOperationP24232142 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24232MF_01252137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252145 .
?targetMotifMatchRegionMatchBeginMF_01252145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01252146 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252135, 1, (STRLEN(?templateMotifCigarP24232MF_01252135) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252135, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionP24232136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252137, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252137) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252137, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252137) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01252138) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252135, 1, (STRLEN(?templateMotifCigarP24232MF_01252135) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252135, CONCAT('^(?:-*[^-]){', STR(((392 - ?templateMotifSequenceMatchBeginPositionP24232136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252137, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252137) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252137, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252137) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_01252138) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('[CLFVT]FG[PST]', SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP24232157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24232MF_01252152 .
?templateMotifSequenceMatchRegionP24232157 faldo:begin ?templateMotifSequenceMatchBeginP24232158 .
?templateMotifSequenceMatchBeginP24232158 faldo:position ?templateMotifSequenceMatchBeginPositionP24232153 ;
faldo:reference isoform:P24232-1 .
?templateMotifSequenceProfileAlignmentOperationP24232159 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24232MF_01252154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252162 .
?targetMotifMatchRegionMatchBeginMF_01252162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01252163 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252152, 1, (STRLEN(?templateMotifCigarP24232MF_01252152) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252152, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP24232153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252154, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252154) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252154, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252154) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_01252155) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionP24232172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24232MF_01252167 .
?templateMotifSequenceMatchRegionP24232172 faldo:begin ?templateMotifSequenceMatchBeginP24232173 .
?templateMotifSequenceMatchBeginP24232173 faldo:position ?templateMotifSequenceMatchBeginPositionP24232168 ;
faldo:reference isoform:P24232-1 .
?templateMotifSequenceProfileAlignmentOperationP24232174 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24232MF_01252169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252177 .
?targetMotifMatchRegionMatchBeginMF_01252177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01252178 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252167, 1, (STRLEN(?templateMotifCigarP24232MF_01252167) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252167, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP24232168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252169, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252169) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252169, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252169) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_01252170) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t181) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionP24232187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24232MF_01252182 .
?templateMotifSequenceMatchRegionP24232187 faldo:begin ?templateMotifSequenceMatchBeginP24232188 .
?templateMotifSequenceMatchBeginP24232188 faldo:position ?templateMotifSequenceMatchBeginPositionP24232183 ;
faldo:reference isoform:P24232-1 .
?templateMotifSequenceProfileAlignmentOperationP24232189 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252193 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24232MF_01252184 .
?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252192 .
?targetMotifMatchRegionMatchBeginMF_01252192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252185 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01252193 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252182, 1, (STRLEN(?templateMotifCigarP24232MF_01252182) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252182, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP24232183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252184, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252184) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252184, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252184) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_01252185) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionP24232202 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232204 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24232MF_01252197 .
?templateMotifSequenceMatchRegionP24232202 faldo:begin ?templateMotifSequenceMatchBeginP24232203 .
?templateMotifSequenceMatchBeginP24232203 faldo:position ?templateMotifSequenceMatchBeginPositionP24232198 ;
faldo:reference isoform:P24232-1 .
?templateMotifSequenceProfileAlignmentOperationP24232204 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252208 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24232MF_01252199 .
?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252207 .
?targetMotifMatchRegionMatchBeginMF_01252207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252200 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01252208 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252197, 1, (STRLEN(?templateMotifCigarP24232MF_01252197) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252197, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionP24232198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252199, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252199) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252199, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252199) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_01252200) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t211) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionP24232217 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232219 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24232MF_01252212 .
?templateMotifSequenceMatchRegionP24232217 faldo:begin ?templateMotifSequenceMatchBeginP24232218 .
?templateMotifSequenceMatchBeginP24232218 faldo:position ?templateMotifSequenceMatchBeginPositionP24232213 ;
faldo:reference isoform:P24232-1 .
?templateMotifSequenceProfileAlignmentOperationP24232219 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252223 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24232MF_01252214 .
?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252222 .
?targetMotifMatchRegionMatchBeginMF_01252222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252215 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01252223 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252212, 1, (STRLEN(?templateMotifCigarP24232MF_01252212) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252212, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP24232213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252214, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252214) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252214, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252214) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_01252215) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t226) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionP24232232 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232234 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24232MF_01252227 .
?templateMotifSequenceMatchRegionP24232232 faldo:begin ?templateMotifSequenceMatchBeginP24232233 .
?templateMotifSequenceMatchBeginP24232233 faldo:position ?templateMotifSequenceMatchBeginPositionP24232228 ;
faldo:reference isoform:P24232-1 .
?templateMotifSequenceProfileAlignmentOperationP24232234 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252238 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24232MF_01252229 .
?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252237 .
?targetMotifMatchRegionMatchBeginMF_01252237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252230 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01252238 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252227, 1, (STRLEN(?templateMotifCigarP24232MF_01252227) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252227, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP24232228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252229, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252229) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252229, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252229) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) .
BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_01252230) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t241) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch246 faldo:location ?templateMotifSequenceMatchRegionP24232247 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24232249 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24232MF_01252242 .
?templateMotifSequenceMatchRegionP24232247 faldo:begin ?templateMotifSequenceMatchBeginP24232248 .
?templateMotifSequenceMatchBeginP24232248 faldo:position ?templateMotifSequenceMatchBeginPositionP24232243 ;
faldo:reference isoform:P24232-1 .
?templateMotifSequenceProfileAlignmentOperationP24232249 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
?targetMotifMatch250 faldo:location ?targetMotifMatchRegionMatch251 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01252253 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24232MF_01252244 .
?targetMotifMatchRegionMatch251 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01252252 .
?targetMotifMatchRegionMatchBeginMF_01252252 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01252245 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01252253 edam:has_input signature:MF_01252 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24232MF_01252242, 1, (STRLEN(?templateMotifCigarP24232MF_01252242) - STRLEN(REPLACE(?templateMotifCigarP24232MF_01252242, CONCAT('^(?:-*[^-]){', STR(((388 - ?templateMotifSequenceMatchBeginPositionP24232243) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1254) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24232MF_01252244, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252244) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24232MF_01252244, 1, (STRLEN(?targetMotifMatchCigarP24232MF_01252244) - STRLEN(REPLACE(?targetMotifMatchCigarP24232MF_01252244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), '')))), '[^-]', ''))) AS ?step2255) .
BIND(((?step2255 + ?targetMotifMatchRegionMatchBeginPositionMF_01252245) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t256) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01252a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon257 {taxon:1224 taxon:1385}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon257 .
BIND(?this AS ?case14) .
}
}
"xsd:string |
