| http://purl.uniprot.org/unirules/MF_01262#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:446681 up:source unirule:MF_01262 .
_:446682 up:source unirule:MF_01262 .
_:446683 up:source unirule:MF_01262 .
_:446684 up:source unirule:MF_01262 .
_:446685 up:source unirule:MF_01262 .
_:446686 up:source unirule:MF_01262 .
_:446687 up:source unirule:MF_01262 .
_:446688 up:source unirule:MF_01262 .
_:446689 up:source unirule:MF_01262 .
_:446690 up:source unirule:MF_01262 .
_:446691 up:source unirule:MF_01262 .
_:446692 up:source unirule:MF_01262 .
_:446693 up:source unirule:MF_01262 .
_:446694 up:source unirule:MF_01262 .
_:446695 up:source unirule:MF_01262 .
_:446696 up:source unirule:MF_01262 .
_:446697 up:source unirule:MF_01262 .
_:446698 up:source unirule:MF_01262 .
_:446699 up:source unirule:MF_01262 .
_:446700 up:source unirule:MF_01262 .
_:446701 up:source unirule:MF_01262 .
_:446702 up:source unirule:MF_01262 .
_:446703 up:source unirule:MF_01262 .
_:446704 up:source unirule:MF_01262 .
_:446705 up:source unirule:MF_01262 .
_:446706 up:source unirule:MF_01262 .
_:446707 up:source unirule:MF_01262 .
_:446708 up:source unirule:MF_01262 .
_:446709 up:source unirule:MF_01262 .
_:446710 up:source unirule:MF_01262 .
_:446711 up:source unirule:MF_01262 .
_:446712 up:source unirule:MF_01262 .
_:446713 up:source unirule:MF_01262 .
_:446714 up:source unirule:MF_01262 .
_:446715 up:source unirule:MF_01262 .
_:446716 up:source unirule:MF_01262 .
_:446717 up:source unirule:MF_01262 .
_:446718 up:source unirule:MF_01262 .
_:446719 up:source unirule:MF_01262 .
_:446720 up:source unirule:MF_01262 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ,
?name4 ,
?name5 ;
up:annotation ?annotation7 ,
?annotation8 ,
?annotation10 ,
?annotation12 ,
?annotation13 ,
?annotation14 ;
up:classifiedWith GO:0000049 ,
GO:0000166 ,
GO:0000287 ,
GO:0001680 ,
GO:0004810 ,
GO:0005524 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:548 ,
keyword:67 ,
keyword:692 ,
keyword:694 ,
keyword:808 ,
keyword:819 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.72' ;
up:fullName 'CCA-adding enzyme' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'CCA tRNA nucleotidyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'tRNA CCA-pyrophosphorylase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'tRNA adenylyl-/cytidylyl- transferase' ;
rdf:type up:Structured_Name .
?name4 up:fullName 'tRNA nucleotidyltransferase' ;
rdf:type up:Structured_Name .
?name5 up:fullName 'tRNA-NT' ;
rdf:type up:Structured_Name .
?gene6 skos:prefLabel 'cca' .
?annotation7 a up:Function_Annotation ;
rdfs:comment "Catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. tRNA 3'-terminal CCA addition is required both for tRNA processing and repair. Also involved in tRNA surveillance by mediating tandem CCA addition to generate a CCACCA at the 3' terminus of unstable tRNAs. While stable tRNAs receive only 3'-terminal CCA, unstable tRNAs are marked with CCACCA and rapidly degraded." .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 up:activity ?activity11 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity11 up:catalyticActivity .
?annotation12 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation13 a up:Annotation ;
rdfs:comment 'A single active site specifically recognizes both ATP and CTP and is responsible for their addition.' .
?annotation14 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Bacterial CCA-adding enzyme type 2 subfamily.' .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:18420 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:18420 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:30616 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:37563 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:30616 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:37563 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:30616 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:37563 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf chebi:30616 .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf chebi:37563 .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
up:ligand ?ligand89 ;
rdf:type up:Binding_Site_Annotation .
?pfsb87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?ligand89 rdfs:subClassOf chebi:30616 .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
up:ligand ?ligand96 ;
rdf:type up:Binding_Site_Annotation .
?pfsb94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?ligand96 rdfs:subClassOf chebi:37563 .
_:446721 a rdf:Statement ;
up:attribution _:446681 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:446722 a rdf:Statement ;
up:attribution _:446682 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:446723 a rdf:Statement ;
up:attribution _:446683 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:446724 a rdf:Statement ;
up:attribution _:446684 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:446725 a rdf:Statement ;
up:attribution _:446685 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name4 .
_:446726 a rdf:Statement ;
up:attribution _:446686 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name5 .
_:446727 a rdf:Statement ;
up:attribution _:446687 ;
rdf:subject ?gene6 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene6 .
_:446728 a rdf:Statement ;
up:attribution _:446688 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:446729 a rdf:Statement ;
up:attribution _:446689 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:446730 a rdf:Statement ;
up:attribution _:446690 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:446731 a rdf:Statement ;
up:attribution _:446691 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:446732 a rdf:Statement ;
up:attribution _:446692 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:446733 a rdf:Statement ;
up:attribution _:446693 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:446734 a rdf:Statement ;
up:attribution _:446694 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:446735 a rdf:Statement ;
up:attribution _:446695 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:446736 a rdf:Statement ;
up:attribution _:446696 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:446737 a rdf:Statement ;
up:attribution _:446697 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:446738 a rdf:Statement ;
up:attribution _:446698 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:446739 a rdf:Statement ;
up:attribution _:446699 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:692 .
_:446740 a rdf:Statement ;
up:attribution _:446700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:446741 a rdf:Statement ;
up:attribution _:446701 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:446742 a rdf:Statement ;
up:attribution _:446702 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:446743 a rdf:Statement ;
up:attribution _:446703 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000049 .
_:446744 a rdf:Statement ;
up:attribution _:446704 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000166 .
_:446745 a rdf:Statement ;
up:attribution _:446705 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:446746 a rdf:Statement ;
up:attribution _:446706 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004810 .
_:446747 a rdf:Statement ;
up:attribution _:446707 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:446748 a rdf:Statement ;
up:attribution _:446708 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001680 .
_:446749 a rdf:Statement ;
up:source unirule:MF_01262 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:446750 a rdf:Statement ;
up:attribution _:446709 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:446751 a rdf:Statement ;
up:source unirule:MF_01262 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:446752 a rdf:Statement ;
up:attribution _:446710 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:446753 a rdf:Statement ;
up:source unirule:MF_01262 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:446754 a rdf:Statement ;
up:attribution _:446711 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:446755 a rdf:Statement ;
up:source unirule:MF_01262 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:446756 a rdf:Statement ;
up:attribution _:446712 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:446757 a rdf:Statement ;
up:source unirule:MF_01262 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:446758 a rdf:Statement ;
up:attribution _:446713 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:446759 a rdf:Statement ;
up:source unirule:MF_01262 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:446760 a rdf:Statement ;
up:attribution _:446714 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:446761 a rdf:Statement ;
up:source unirule:MF_01262 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:446762 a rdf:Statement ;
up:attribution _:446715 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:446763 a rdf:Statement ;
up:source unirule:MF_01262 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:446764 a rdf:Statement ;
up:attribution _:446716 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:446765 a rdf:Statement ;
up:source unirule:MF_01262 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:446766 a rdf:Statement ;
up:attribution _:446717 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:446767 a rdf:Statement ;
up:source unirule:MF_01262 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:446768 a rdf:Statement ;
up:attribution _:446718 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:446769 a rdf:Statement ;
up:source unirule:MF_01262 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:446770 a rdf:Statement ;
up:attribution _:446719 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:446771 a rdf:Statement ;
up:source unirule:MF_01262 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:446772 a rdf:Statement ;
up:attribution _:446720 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01262
#Rule MF_01262 Created by:? on:2005-07-29 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01262 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01261 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a4')) AS ?name4) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a14')) AS ?annotation14) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP57169104 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169106 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP57169MF_0126299 .
?templateMotifSequenceMatchRegionP57169104 faldo:begin ?templateMotifSequenceMatchBeginP57169105 .
?templateMotifSequenceMatchBeginP57169105 faldo:position ?templateMotifSequenceMatchBeginPositionP57169100 ;
faldo:reference isoform:P57169-1 .
?templateMotifSequenceProfileAlignmentOperationP57169106 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262110 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP57169MF_01262101 .
?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262109 .
?targetMotifMatchRegionMatchBeginMF_01262109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262102 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01262110 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_0126299, 1, (STRLEN(?templateMotifCigarP57169MF_0126299) - STRLEN(REPLACE(?templateMotifCigarP57169MF_0126299, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP57169100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262101, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262101) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262101, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262101) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_01262102) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP57169119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP57169MF_01262114 .
?templateMotifSequenceMatchRegionP57169119 faldo:begin ?templateMotifSequenceMatchBeginP57169120 .
?templateMotifSequenceMatchBeginP57169120 faldo:position ?templateMotifSequenceMatchBeginPositionP57169115 ;
faldo:reference isoform:P57169-1 .
?templateMotifSequenceProfileAlignmentOperationP57169121 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP57169MF_01262116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262124 .
?targetMotifMatchRegionMatchBeginMF_01262124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01262125 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262114, 1, (STRLEN(?templateMotifCigarP57169MF_01262114) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262114, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP57169115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262116, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262116) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262116, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262116) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01262117) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP57169134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP57169MF_01262129 .
?templateMotifSequenceMatchRegionP57169134 faldo:begin ?templateMotifSequenceMatchBeginP57169135 .
?templateMotifSequenceMatchBeginP57169135 faldo:position ?templateMotifSequenceMatchBeginPositionP57169130 ;
faldo:reference isoform:P57169-1 .
?templateMotifSequenceProfileAlignmentOperationP57169136 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP57169MF_01262131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262139 .
?targetMotifMatchRegionMatchBeginMF_01262139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01262140 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262129, 1, (STRLEN(?templateMotifCigarP57169MF_01262129) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262129, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP57169130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262131, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262131) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262131, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262131) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01262132) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP57169149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP57169MF_01262144 .
?templateMotifSequenceMatchRegionP57169149 faldo:begin ?templateMotifSequenceMatchBeginP57169150 .
?templateMotifSequenceMatchBeginP57169150 faldo:position ?templateMotifSequenceMatchBeginPositionP57169145 ;
faldo:reference isoform:P57169-1 .
?templateMotifSequenceProfileAlignmentOperationP57169151 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP57169MF_01262146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262154 .
?targetMotifMatchRegionMatchBeginMF_01262154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01262155 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262144, 1, (STRLEN(?templateMotifCigarP57169MF_01262144) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262144, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP57169145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262146, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262146) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262146, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262146) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_01262147) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP57169164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP57169MF_01262159 .
?templateMotifSequenceMatchRegionP57169164 faldo:begin ?templateMotifSequenceMatchBeginP57169165 .
?templateMotifSequenceMatchBeginP57169165 faldo:position ?templateMotifSequenceMatchBeginPositionP57169160 ;
faldo:reference isoform:P57169-1 .
?templateMotifSequenceProfileAlignmentOperationP57169166 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP57169MF_01262161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262169 .
?targetMotifMatchRegionMatchBeginMF_01262169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01262170 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262159, 1, (STRLEN(?templateMotifCigarP57169MF_01262159) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262159, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP57169160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262161, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262161) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262161, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262161) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_01262162) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP57169179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP57169MF_01262174 .
?templateMotifSequenceMatchRegionP57169179 faldo:begin ?templateMotifSequenceMatchBeginP57169180 .
?templateMotifSequenceMatchBeginP57169180 faldo:position ?templateMotifSequenceMatchBeginPositionP57169175 ;
faldo:reference isoform:P57169-1 .
?templateMotifSequenceProfileAlignmentOperationP57169181 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP57169MF_01262176 .
?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262184 .
?targetMotifMatchRegionMatchBeginMF_01262184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01262185 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262174, 1, (STRLEN(?templateMotifCigarP57169MF_01262174) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262174, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP57169175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262176, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262176) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262176, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262176) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_01262177) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionP57169194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP57169MF_01262189 .
?templateMotifSequenceMatchRegionP57169194 faldo:begin ?templateMotifSequenceMatchBeginP57169195 .
?templateMotifSequenceMatchBeginP57169195 faldo:position ?templateMotifSequenceMatchBeginPositionP57169190 ;
faldo:reference isoform:P57169-1 .
?templateMotifSequenceProfileAlignmentOperationP57169196 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262200 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP57169MF_01262191 .
?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262199 .
?targetMotifMatchRegionMatchBeginMF_01262199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262192 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01262200 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262189, 1, (STRLEN(?templateMotifCigarP57169MF_01262189) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262189, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP57169190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262191, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262191) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262191, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262191) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_01262192) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t203) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionP57169209 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169211 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP57169MF_01262204 .
?templateMotifSequenceMatchRegionP57169209 faldo:begin ?templateMotifSequenceMatchBeginP57169210 .
?templateMotifSequenceMatchBeginP57169210 faldo:position ?templateMotifSequenceMatchBeginPositionP57169205 ;
faldo:reference isoform:P57169-1 .
?templateMotifSequenceProfileAlignmentOperationP57169211 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262215 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP57169MF_01262206 .
?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262214 .
?targetMotifMatchRegionMatchBeginMF_01262214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262207 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01262215 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262204, 1, (STRLEN(?templateMotifCigarP57169MF_01262204) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262204, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP57169205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262206, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262206) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262206, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262206) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_01262207) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionP57169224 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169226 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP57169MF_01262219 .
?templateMotifSequenceMatchRegionP57169224 faldo:begin ?templateMotifSequenceMatchBeginP57169225 .
?templateMotifSequenceMatchBeginP57169225 faldo:position ?templateMotifSequenceMatchBeginPositionP57169220 ;
faldo:reference isoform:P57169-1 .
?templateMotifSequenceProfileAlignmentOperationP57169226 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262230 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP57169MF_01262221 .
?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262229 .
?targetMotifMatchRegionMatchBeginMF_01262229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262222 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01262230 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262219, 1, (STRLEN(?templateMotifCigarP57169MF_01262219) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262219, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP57169220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262221, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262221) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262221, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262221) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_01262222) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionP57169239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP57169MF_01262234 .
?templateMotifSequenceMatchRegionP57169239 faldo:begin ?templateMotifSequenceMatchBeginP57169240 .
?templateMotifSequenceMatchBeginP57169240 faldo:position ?templateMotifSequenceMatchBeginPositionP57169235 ;
faldo:reference isoform:P57169-1 .
?templateMotifSequenceProfileAlignmentOperationP57169241 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP57169MF_01262236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262244 .
?targetMotifMatchRegionMatchBeginMF_01262244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01262245 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262234, 1, (STRLEN(?templateMotifCigarP57169MF_01262234) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262234, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP57169235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262236, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262236) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262236, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262236) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_01262237) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs1t248) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionP57169254 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169256 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP57169MF_01262249 .
?templateMotifSequenceMatchRegionP57169254 faldo:begin ?templateMotifSequenceMatchBeginP57169255 .
?templateMotifSequenceMatchBeginP57169255 faldo:position ?templateMotifSequenceMatchBeginPositionP57169250 ;
faldo:reference isoform:P57169-1 .
?templateMotifSequenceProfileAlignmentOperationP57169256 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262260 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP57169MF_01262251 .
?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262259 .
?targetMotifMatchRegionMatchBeginMF_01262259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262252 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01262260 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262249, 1, (STRLEN(?templateMotifCigarP57169MF_01262249) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262249, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP57169250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262251, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262251) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262251, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262251) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) .
BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_01262252) - 1) AS ?thisPositionOn90) .
BIND(?thisPositionOn90 AS ?thisPositionOn91) .
BIND(?this AS ?pfs1t263) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse88) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch268 faldo:location ?templateMotifSequenceMatchRegionP57169269 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169271 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP57169MF_01262264 .
?templateMotifSequenceMatchRegionP57169269 faldo:begin ?templateMotifSequenceMatchBeginP57169270 .
?templateMotifSequenceMatchBeginP57169270 faldo:position ?templateMotifSequenceMatchBeginPositionP57169265 ;
faldo:reference isoform:P57169-1 .
?templateMotifSequenceProfileAlignmentOperationP57169271 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
?targetMotifMatch272 faldo:location ?targetMotifMatchRegionMatch273 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262275 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP57169MF_01262266 .
?targetMotifMatchRegionMatch273 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262274 .
?targetMotifMatchRegionMatchBeginMF_01262274 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262267 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01262275 edam:has_input signature:MF_01262 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262264, 1, (STRLEN(?templateMotifCigarP57169MF_01262264) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262264, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP57169265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262266, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262266) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262266, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262266) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) .
BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_01262267) - 1) AS ?thisPositionOn97) .
BIND(?thisPositionOn97 AS ?thisPositionOn98) .
BIND(?this AS ?pfs1t278) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse95) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01262a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
}
"xsd:string |
