| http://purl.uniprot.org/unirules/MF_01278#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:455644 up:source unirule:MF_01278 .
_:455645 up:source unirule:MF_01278 .
_:455646 up:source unirule:MF_01278 .
_:455647 up:source unirule:MF_01278 .
_:455648 up:source unirule:MF_01278 .
_:455649 up:source unirule:MF_01278 .
_:455650 up:source unirule:MF_01278 .
_:455651 up:source unirule:MF_01278 .
_:455652 up:source unirule:MF_01278 .
_:455653 up:source unirule:MF_01278 .
_:455654 up:source unirule:MF_01278 .
_:455655 up:source unirule:MF_01278 .
_:455656 up:source unirule:MF_01278 .
_:455657 up:source unirule:MF_01278 .
_:455658 up:source unirule:MF_01278 .
_:455659 up:source unirule:MF_01278 .
_:455660 up:source unirule:MF_01278 .
_:455661 up:source unirule:MF_01278 .
_:455662 up:source unirule:MF_01278 .
_:455663 up:source unirule:MF_01278 .
_:455664 up:source unirule:MF_01278 .
_:455665 up:source unirule:MF_01278 .
_:455666 up:source unirule:MF_01278 .
_:455667 up:source unirule:MF_01278 .
_:455668 up:source unirule:MF_01278 .
_:455669 up:source unirule:MF_01278 .
_:455670 up:source unirule:MF_01278 .
_:455671 up:source unirule:MF_01278 .
_:455672 up:source unirule:MF_01278 .
_:455673 up:source unirule:MF_01278 .
_:455674 up:source unirule:MF_01278 .
_:455675 up:source unirule:MF_01278 .
_:455676 up:source unirule:MF_01278 .
_:455677 up:source unirule:MF_01278 .
_:455678 up:source unirule:MF_01278 .
_:455679 up:source unirule:MF_01278 .
_:455680 up:source unirule:MF_01278 .
_:455681 up:source unirule:MF_01278 .
_:455682 up:source unirule:MF_01278 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation13 ,
?annotation14 ;
up:classifiedWith GO:0004828 ,
GO:0005524 ,
GO:0005737 ,
GO:0006434 ,
GO:0016260 ,
keyword:30 ,
keyword:436 ,
keyword:479 ,
keyword:547 ,
keyword:648 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.1.1.11' ;
up:fullName 'Type-2 serine--tRNA ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Seryl-tRNA synthetase' ;
up:shortName 'SerRS' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Seryl-tRNA(Ser/Sec) synthetase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'serS' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) biosynthesis; L-seryl-tRNA(Sec) from L-serine and tRNA(Sec): step 1/1.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation11 a up:Subcellular_Location_Annotation .
?annotation11li12 up:cellularComponent .
?annotation13 a up:Domain_Annotation ;
rdfs:comment 'Consists of two distinct domains, a catalytic core and a N-terminal extension that is presumably involved in tRNA binding.' .
?annotation14 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-II aminoacyl-tRNA synthetase family. Type-2 seryl-tRNA synthetase subfamily.' .
?case15 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs16 up:annotation ?annotation17 ,
?annotation23 ,
?annotation29 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:29105 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:29105 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:29105 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:30616 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:30616 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:33384 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:33384 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:33384 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:33384 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:30616 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:33384 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation .
?pfsb93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf chebi:30616 .
_:455683 a rdf:Statement ;
up:attribution _:455644 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:455684 a rdf:Statement ;
up:attribution _:455645 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:455685 a rdf:Statement ;
up:attribution _:455646 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:455686 a rdf:Statement ;
up:attribution _:455647 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:455687 a rdf:Statement ;
up:attribution _:455648 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:455688 a rdf:Statement ;
up:attribution _:455649 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:455689 a rdf:Statement ;
up:attribution _:455650 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:455690 a rdf:Statement ;
up:attribution _:455651 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:455691 a rdf:Statement ;
up:attribution _:455652 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:455692 a rdf:Statement ;
up:attribution _:455653 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:455693 a rdf:Statement ;
up:attribution _:455654 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:455694 a rdf:Statement ;
up:attribution _:455655 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:455695 a rdf:Statement ;
up:attribution _:455656 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:455696 a rdf:Statement ;
up:attribution _:455657 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:30 .
_:455697 a rdf:Statement ;
up:attribution _:455658 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:455698 a rdf:Statement ;
up:attribution _:455659 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:455699 a rdf:Statement ;
up:attribution _:455660 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:455700 a rdf:Statement ;
up:attribution _:455661 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:455701 a rdf:Statement ;
up:attribution _:455662 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:455702 a rdf:Statement ;
up:attribution _:455663 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004828 .
_:455703 a rdf:Statement ;
up:attribution _:455664 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:455704 a rdf:Statement ;
up:attribution _:455665 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016260 .
_:455705 a rdf:Statement ;
up:attribution _:455666 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006434 .
_:455706 a rdf:Statement ;
up:attribution _:455667 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:455707 a rdf:Statement ;
up:attribution _:455668 ;
rdf:subject ?case15 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:455708 a rdf:Statement ;
up:attribution _:455669 ;
rdf:subject ?case15 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:455709 a rdf:Statement ;
up:attribution _:455670 ;
rdf:subject ?case15 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:455710 a rdf:Statement ;
up:source unirule:MF_01278 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:455711 a rdf:Statement ;
up:attribution _:455671 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:455712 a rdf:Statement ;
up:source unirule:MF_01278 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:455713 a rdf:Statement ;
up:attribution _:455672 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:455714 a rdf:Statement ;
up:source unirule:MF_01278 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:455715 a rdf:Statement ;
up:attribution _:455673 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:455716 a rdf:Statement ;
up:source unirule:MF_01278 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:455717 a rdf:Statement ;
up:attribution _:455674 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:455718 a rdf:Statement ;
up:source unirule:MF_01278 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:455719 a rdf:Statement ;
up:attribution _:455675 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:455720 a rdf:Statement ;
up:source unirule:MF_01278 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:455721 a rdf:Statement ;
up:attribution _:455676 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:455722 a rdf:Statement ;
up:source unirule:MF_01278 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:455723 a rdf:Statement ;
up:attribution _:455677 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:455724 a rdf:Statement ;
up:source unirule:MF_01278 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:455725 a rdf:Statement ;
up:attribution _:455678 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:455726 a rdf:Statement ;
up:source unirule:MF_01278 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:455727 a rdf:Statement ;
up:attribution _:455679 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:455728 a rdf:Statement ;
up:source unirule:MF_01278 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:455729 a rdf:Statement ;
up:attribution _:455680 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:455730 a rdf:Statement ;
up:source unirule:MF_01278 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:455731 a rdf:Statement ;
up:attribution _:455681 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:455732 a rdf:Statement ;
up:source unirule:MF_01278 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:455733 a rdf:Statement ;
up:attribution _:455682 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01278
#Rule MF_01278 Created by:? on:2007-04-16 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01278 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01278a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a14')) AS ?annotation14) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionQ46AN5103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46AN5105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46AN5MF_0127898 .
?templateMotifSequenceMatchRegionQ46AN5103 faldo:begin ?templateMotifSequenceMatchBeginQ46AN5104 .
?templateMotifSequenceMatchBeginQ46AN5104 faldo:position ?templateMotifSequenceMatchBeginPositionQ46AN599 ;
faldo:reference isoform:Q46AN5-1 .
?templateMotifSequenceProfileAlignmentOperationQ46AN5105 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01278109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46AN5MF_01278100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01278108 .
?targetMotifMatchRegionMatchBeginMF_01278108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01278101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01278109 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_0127898, 1, (STRLEN(?templateMotifCigarQ46AN5MF_0127898) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_0127898, CONCAT('^(?:-*[^-]){', STR(((306 - ?templateMotifSequenceMatchBeginPositionQ46AN599) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278100, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278100) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278100, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278100) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01278101) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_0127898, 1, (STRLEN(?templateMotifCigarQ46AN5MF_0127898) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_0127898, CONCAT('^(?:-*[^-]){', STR(((355 - ?templateMotifSequenceMatchBeginPositionQ46AN599) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278100, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278100) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278100, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278100) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01278101) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_0127898, 1, (STRLEN(?templateMotifCigarQ46AN5MF_0127898) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_0127898, CONCAT('^(?:-*[^-]){', STR(((461 - ?templateMotifSequenceMatchBeginPositionQ46AN599) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278100, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278100) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278100, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278100) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01278101) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'C')) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionQ46AN5124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46AN5126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46AN5MF_01278119 .
?templateMotifSequenceMatchRegionQ46AN5124 faldo:begin ?templateMotifSequenceMatchBeginQ46AN5125 .
?templateMotifSequenceMatchBeginQ46AN5125 faldo:position ?templateMotifSequenceMatchBeginPositionQ46AN5120 ;
faldo:reference isoform:Q46AN5-1 .
?templateMotifSequenceProfileAlignmentOperationQ46AN5126 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01278130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46AN5MF_01278121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01278129 .
?targetMotifMatchRegionMatchBeginMF_01278129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01278122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01278130 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_01278119, 1, (STRLEN(?templateMotifCigarQ46AN5MF_01278119) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_01278119, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionQ46AN5120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278121, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278121) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278121, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278121) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01278122) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_01278119, 1, (STRLEN(?templateMotifCigarQ46AN5MF_01278119) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_01278119, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionQ46AN5120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278121, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278121) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278121, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278121) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_01278122) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX]E', SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionQ46AN5141 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46AN5143 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46AN5MF_01278136 .
?templateMotifSequenceMatchRegionQ46AN5141 faldo:begin ?templateMotifSequenceMatchBeginQ46AN5142 .
?templateMotifSequenceMatchBeginQ46AN5142 faldo:position ?templateMotifSequenceMatchBeginPositionQ46AN5137 ;
faldo:reference isoform:Q46AN5-1 .
?templateMotifSequenceProfileAlignmentOperationQ46AN5143 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01278147 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46AN5MF_01278138 .
?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01278146 .
?targetMotifMatchRegionMatchBeginMF_01278146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01278139 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01278147 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_01278136, 1, (STRLEN(?templateMotifCigarQ46AN5MF_01278136) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_01278136, CONCAT('^(?:-*[^-]){', STR(((347 - ?templateMotifSequenceMatchBeginPositionQ46AN5137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278138, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278138) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278138, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278138) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) .
BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_01278139) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_01278136, 1, (STRLEN(?templateMotifCigarQ46AN5MF_01278136) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_01278136, CONCAT('^(?:-*[^-]){', STR(((348 - ?templateMotifSequenceMatchBeginPositionQ46AN5137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278138, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278138) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278138, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278138) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_01278139) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)) = 'RV')) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionQ46AN5158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46AN5160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46AN5MF_01278153 .
?templateMotifSequenceMatchRegionQ46AN5158 faldo:begin ?templateMotifSequenceMatchBeginQ46AN5159 .
?templateMotifSequenceMatchBeginQ46AN5159 faldo:position ?templateMotifSequenceMatchBeginPositionQ46AN5154 ;
faldo:reference isoform:Q46AN5-1 .
?templateMotifSequenceProfileAlignmentOperationQ46AN5160 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01278164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46AN5MF_01278155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01278163 .
?targetMotifMatchRegionMatchBeginMF_01278163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01278156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01278164 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_01278153, 1, (STRLEN(?templateMotifCigarQ46AN5MF_01278153) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_01278153, CONCAT('^(?:-*[^-]){', STR(((353 - ?templateMotifSequenceMatchBeginPositionQ46AN5154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278155, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278155) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278155, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278155) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_01278156) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_01278153, 1, (STRLEN(?templateMotifCigarQ46AN5MF_01278153) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_01278153, CONCAT('^(?:-*[^-]){', STR(((355 - ?templateMotifSequenceMatchBeginPositionQ46AN5154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278155, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278155) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278155, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278155) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_01278156) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX]E', SUBSTR(?thisSequenceValue, ?thisPositionOn54, (?thisPositionOn55 - ?thisPositionOn54)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionQ46AN5175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46AN5177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46AN5MF_01278170 .
?templateMotifSequenceMatchRegionQ46AN5175 faldo:begin ?templateMotifSequenceMatchBeginQ46AN5176 .
?templateMotifSequenceMatchBeginQ46AN5176 faldo:position ?templateMotifSequenceMatchBeginPositionQ46AN5171 ;
faldo:reference isoform:Q46AN5-1 .
?templateMotifSequenceProfileAlignmentOperationQ46AN5177 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01278181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46AN5MF_01278172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01278180 .
?targetMotifMatchRegionMatchBeginMF_01278180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01278173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01278181 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_01278170, 1, (STRLEN(?templateMotifCigarQ46AN5MF_01278170) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_01278170, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionQ46AN5171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278172, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278172) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278172, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278172) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_01278173) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch189 faldo:location ?templateMotifSequenceMatchRegionQ46AN5190 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46AN5192 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46AN5MF_01278185 .
?templateMotifSequenceMatchRegionQ46AN5190 faldo:begin ?templateMotifSequenceMatchBeginQ46AN5191 .
?templateMotifSequenceMatchBeginQ46AN5191 faldo:position ?templateMotifSequenceMatchBeginPositionQ46AN5186 ;
faldo:reference isoform:Q46AN5-1 .
?templateMotifSequenceProfileAlignmentOperationQ46AN5192 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
?targetMotifMatch193 faldo:location ?targetMotifMatchRegionMatch194 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01278196 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46AN5MF_01278187 .
?targetMotifMatchRegionMatch194 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01278195 .
?targetMotifMatchRegionMatchBeginMF_01278195 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01278188 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01278196 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_01278185, 1, (STRLEN(?templateMotifCigarQ46AN5MF_01278185) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_01278185, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionQ46AN5186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278187, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278187) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278187, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278187) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_01278188) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs2t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionQ46AN5205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46AN5207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46AN5MF_01278200 .
?templateMotifSequenceMatchRegionQ46AN5205 faldo:begin ?templateMotifSequenceMatchBeginQ46AN5206 .
?templateMotifSequenceMatchBeginQ46AN5206 faldo:position ?templateMotifSequenceMatchBeginPositionQ46AN5201 ;
faldo:reference isoform:Q46AN5-1 .
?templateMotifSequenceProfileAlignmentOperationQ46AN5207 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01278211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46AN5MF_01278202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01278210 .
?targetMotifMatchRegionMatchBeginMF_01278210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01278203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01278211 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_01278200, 1, (STRLEN(?templateMotifCigarQ46AN5MF_01278200) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_01278200, CONCAT('^(?:-*[^-]){', STR(((400 - ?templateMotifSequenceMatchBeginPositionQ46AN5201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278202, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278202) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278202, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278202) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_01278203) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs2t214) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionQ46AN5220 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46AN5222 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46AN5MF_01278215 .
?templateMotifSequenceMatchRegionQ46AN5220 faldo:begin ?templateMotifSequenceMatchBeginQ46AN5221 .
?templateMotifSequenceMatchBeginQ46AN5221 faldo:position ?templateMotifSequenceMatchBeginPositionQ46AN5216 ;
faldo:reference isoform:Q46AN5-1 .
?templateMotifSequenceProfileAlignmentOperationQ46AN5222 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01278226 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46AN5MF_01278217 .
?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01278225 .
?targetMotifMatchRegionMatchBeginMF_01278225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01278218 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01278226 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_01278215, 1, (STRLEN(?templateMotifCigarQ46AN5MF_01278215) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_01278215, CONCAT('^(?:-*[^-]){', STR(((432 - ?templateMotifSequenceMatchBeginPositionQ46AN5216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278217, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278217) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278217, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278217) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) .
BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_01278218) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs2t229) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch234 faldo:location ?templateMotifSequenceMatchRegionQ46AN5235 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46AN5237 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46AN5MF_01278230 .
?templateMotifSequenceMatchRegionQ46AN5235 faldo:begin ?templateMotifSequenceMatchBeginQ46AN5236 .
?templateMotifSequenceMatchBeginQ46AN5236 faldo:position ?templateMotifSequenceMatchBeginPositionQ46AN5231 ;
faldo:reference isoform:Q46AN5-1 .
?templateMotifSequenceProfileAlignmentOperationQ46AN5237 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
?targetMotifMatch238 faldo:location ?targetMotifMatchRegionMatch239 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01278241 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46AN5MF_01278232 .
?targetMotifMatchRegionMatch239 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01278240 .
?targetMotifMatchRegionMatchBeginMF_01278240 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01278233 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01278241 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_01278230, 1, (STRLEN(?templateMotifCigarQ46AN5MF_01278230) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_01278230, CONCAT('^(?:-*[^-]){', STR(((435 - ?templateMotifSequenceMatchBeginPositionQ46AN5231) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1242) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278232, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278232) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278232, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278232) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), '')))), '[^-]', ''))) AS ?step2243) .
BIND(((?step2243 + ?targetMotifMatchRegionMatchBeginPositionMF_01278233) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs2t244) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch249 faldo:location ?templateMotifSequenceMatchRegionQ46AN5250 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ46AN5252 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ46AN5MF_01278245 .
?templateMotifSequenceMatchRegionQ46AN5250 faldo:begin ?templateMotifSequenceMatchBeginQ46AN5251 .
?templateMotifSequenceMatchBeginQ46AN5251 faldo:position ?templateMotifSequenceMatchBeginPositionQ46AN5246 ;
faldo:reference isoform:Q46AN5-1 .
?templateMotifSequenceProfileAlignmentOperationQ46AN5252 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
?targetMotifMatch253 faldo:location ?targetMotifMatchRegionMatch254 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01278256 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ46AN5MF_01278247 .
?targetMotifMatchRegionMatch254 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01278255 .
?targetMotifMatchRegionMatchBeginMF_01278255 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01278248 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01278256 edam:has_input signature:MF_01278 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ46AN5MF_01278245, 1, (STRLEN(?templateMotifCigarQ46AN5MF_01278245) - STRLEN(REPLACE(?templateMotifCigarQ46AN5MF_01278245, CONCAT('^(?:-*[^-]){', STR(((468 - ?templateMotifSequenceMatchBeginPositionQ46AN5246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1257) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278247, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278247) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ46AN5MF_01278247, 1, (STRLEN(?targetMotifMatchCigarQ46AN5MF_01278247) - STRLEN(REPLACE(?targetMotifMatchCigarQ46AN5MF_01278247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), '')))), '[^-]', ''))) AS ?step2258) .
BIND(((?step2258 + ?targetMotifMatchRegionMatchBeginPositionMF_01278248) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs2t259) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01278a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag260) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag260, ?UNBOUND_VARIABLE) AS ?case15) .
}
"xsd:string |
