| http://purl.uniprot.org/unirules/MF_01638#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:596438 up:source unirule:MF_01638 .
_:596439 up:source unirule:MF_01638 .
_:596440 up:source unirule:MF_01638 .
_:596441 up:source unirule:MF_01638 .
_:596442 up:source unirule:MF_01638 .
_:596443 up:source unirule:MF_01638 .
_:596444 up:source unirule:MF_01638 .
_:596445 up:source unirule:MF_01638 .
_:596446 up:source unirule:MF_01638 .
_:596447 up:source unirule:MF_01638 .
_:596448 up:source unirule:MF_01638 .
_:596449 up:source unirule:MF_01638 .
_:596450 up:source unirule:MF_01638 .
_:596451 up:source unirule:MF_01638 .
_:596452 up:source unirule:MF_01638 .
_:596453 up:source unirule:MF_01638 .
_:596454 up:source unirule:MF_01638 .
_:596455 up:source unirule:MF_01638 .
_:596456 up:source unirule:MF_01638 .
_:596457 up:source unirule:MF_01638 .
_:596458 up:source unirule:MF_01638 .
_:596459 up:source unirule:MF_01638 .
_:596460 up:source unirule:MF_01638 .
_:596461 up:source unirule:MF_01638 .
_:596462 up:source unirule:MF_01638 .
_:596463 up:source unirule:MF_01638 .
_:596464 up:source unirule:MF_01638 .
_:596465 up:source unirule:MF_01638 .
_:596466 up:source unirule:MF_01638 .
_:596467 up:source unirule:MF_01638 .
_:596468 up:source unirule:MF_01638 .
_:596469 up:source unirule:MF_01638 .
_:596470 up:source unirule:MF_01638 .
_:596471 up:source unirule:MF_01638 .
_:596472 up:source unirule:MF_01638 .
_:596473 up:source unirule:MF_01638 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation13 ,
?annotation14 ,
?annotation15 ;
up:classifiedWith GO:0000287 ,
GO:0005524 ,
GO:0008270 ,
GO:0008478 ,
GO:0009443 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.35' ;
up:fullName 'Pyridoxine/pyridoxal/pyridoxamine kinase' ;
up:shortName 'PN/PL/PM kinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'B6-vitamer kinase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'pdxK' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "B6-vitamer kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxine (PN), pyridoxal (PL), and pyridoxamine (PM), forming their respective 5'-phosphorylated esters, i.e. PNP, PLP and PMP." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity .
?annotation10 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation11 a up:Pathway_Annotation ;
rdfs:comment "Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxal: step 1/1." .
?annotation12 a up:Pathway_Annotation ;
rdfs:comment "Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxine 5'-phosphate from pyridoxine: step 1/1." .
?annotation13 a up:Pathway_Annotation ;
rdfs:comment "Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxamine 5'-phosphate from pyridoxamine: step 1/1." .
?annotation14 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation15 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the pyridoxine kinase family. PdxK subfamily.' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:30616 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:18420 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:18420 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf ?molecule42 .
?molecule42 rdfs:label 'substrate' .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf ?molecule50 .
?molecule50 rdfs:label 'substrate' .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:30616 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:30616 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:30616 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:30616 .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation .
?pfsb83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf chebi:30616 .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf ?molecule93 .
?molecule93 rdfs:label 'substrate' .
_:596474 a rdf:Statement ;
up:attribution _:596438 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:596475 a rdf:Statement ;
up:attribution _:596439 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:596476 a rdf:Statement ;
up:attribution _:596440 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:596477 a rdf:Statement ;
up:attribution _:596441 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:596478 a rdf:Statement ;
up:attribution _:596442 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:596479 a rdf:Statement ;
up:attribution _:596443 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:596480 a rdf:Statement ;
up:attribution _:596444 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:596481 a rdf:Statement ;
up:attribution _:596445 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:596482 a rdf:Statement ;
up:attribution _:596446 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:596483 a rdf:Statement ;
up:attribution _:596447 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:596484 a rdf:Statement ;
up:attribution _:596448 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:596485 a rdf:Statement ;
up:attribution _:596449 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:596486 a rdf:Statement ;
up:attribution _:596450 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:596487 a rdf:Statement ;
up:attribution _:596451 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:596488 a rdf:Statement ;
up:attribution _:596452 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:596489 a rdf:Statement ;
up:attribution _:596453 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:596490 a rdf:Statement ;
up:attribution _:596454 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:596491 a rdf:Statement ;
up:attribution _:596455 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:596492 a rdf:Statement ;
up:attribution _:596456 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:596493 a rdf:Statement ;
up:attribution _:596457 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:596494 a rdf:Statement ;
up:attribution _:596458 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:596495 a rdf:Statement ;
up:attribution _:596459 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:596496 a rdf:Statement ;
up:attribution _:596460 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:596497 a rdf:Statement ;
up:attribution _:596461 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008478 .
_:596498 a rdf:Statement ;
up:attribution _:596462 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009443 .
_:596499 a rdf:Statement ;
up:source unirule:MF_01638 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:596500 a rdf:Statement ;
up:attribution _:596463 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:596501 a rdf:Statement ;
up:source unirule:MF_01638 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:596502 a rdf:Statement ;
up:attribution _:596464 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:596503 a rdf:Statement ;
up:source unirule:MF_01638 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:596504 a rdf:Statement ;
up:attribution _:596465 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:596505 a rdf:Statement ;
up:source unirule:MF_01638 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:596506 a rdf:Statement ;
up:attribution _:596466 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:596507 a rdf:Statement ;
up:source unirule:MF_01638 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:596508 a rdf:Statement ;
up:attribution _:596467 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:596509 a rdf:Statement ;
up:source unirule:MF_01638 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:596510 a rdf:Statement ;
up:attribution _:596468 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:596511 a rdf:Statement ;
up:source unirule:MF_01638 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:596512 a rdf:Statement ;
up:attribution _:596469 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:596513 a rdf:Statement ;
up:source unirule:MF_01638 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:596514 a rdf:Statement ;
up:attribution _:596470 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:596515 a rdf:Statement ;
up:source unirule:MF_01638 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:596516 a rdf:Statement ;
up:attribution _:596471 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:596517 a rdf:Statement ;
up:source unirule:MF_01638 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:596518 a rdf:Statement ;
up:attribution _:596472 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:596519 a rdf:Statement ;
up:source unirule:MF_01638 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:596520 a rdf:Statement ;
up:attribution _:596473 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01638
#Rule MF_01638 Created by:? on:2006-11-23 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01638 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01638a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a15')) AS ?annotation15) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionP40191101 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40191103 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40191MF_0163896 .
?templateMotifSequenceMatchRegionP40191101 faldo:begin ?templateMotifSequenceMatchBeginP40191102 .
?templateMotifSequenceMatchBeginP40191102 faldo:position ?templateMotifSequenceMatchBeginPositionP4019197 ;
faldo:reference isoform:P40191-1 .
?templateMotifSequenceProfileAlignmentOperationP40191103 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01638107 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40191MF_0163898 .
?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01638106 .
?targetMotifMatchRegionMatchBeginMF_01638106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0163899 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01638107 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40191MF_0163896, 1, (STRLEN(?templateMotifCigarP40191MF_0163896) - STRLEN(REPLACE(?templateMotifCigarP40191MF_0163896, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP4019197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40191MF_0163898, 1, (STRLEN(?targetMotifMatchCigarP40191MF_0163898) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_0163898, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40191MF_0163898, 1, (STRLEN(?targetMotifMatchCigarP40191MF_0163898) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_0163898, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0163899) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40191MF_0163896, 1, (STRLEN(?templateMotifCigarP40191MF_0163896) - STRLEN(REPLACE(?templateMotifCigarP40191MF_0163896, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP4019197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40191MF_0163898, 1, (STRLEN(?targetMotifMatchCigarP40191MF_0163898) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_0163898, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40191MF_0163898, 1, (STRLEN(?targetMotifMatchCigarP40191MF_0163898) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_0163898, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_0163899) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][VI]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP40191118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40191120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40191MF_01638113 .
?templateMotifSequenceMatchRegionP40191118 faldo:begin ?templateMotifSequenceMatchBeginP40191119 .
?templateMotifSequenceMatchBeginP40191119 faldo:position ?templateMotifSequenceMatchBeginPositionP40191114 ;
faldo:reference isoform:P40191-1 .
?templateMotifSequenceProfileAlignmentOperationP40191120 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01638124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40191MF_01638115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01638123 .
?targetMotifMatchRegionMatchBeginMF_01638123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01638116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01638124 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40191MF_01638113, 1, (STRLEN(?templateMotifCigarP40191MF_01638113) - STRLEN(REPLACE(?templateMotifCigarP40191MF_01638113, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP40191114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40191MF_01638115, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638115) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40191MF_01638115, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638115) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01638116) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP40191133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40191135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40191MF_01638128 .
?templateMotifSequenceMatchRegionP40191133 faldo:begin ?templateMotifSequenceMatchBeginP40191134 .
?templateMotifSequenceMatchBeginP40191134 faldo:position ?templateMotifSequenceMatchBeginPositionP40191129 ;
faldo:reference isoform:P40191-1 .
?templateMotifSequenceProfileAlignmentOperationP40191135 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01638139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40191MF_01638130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01638138 .
?targetMotifMatchRegionMatchBeginMF_01638138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01638131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01638139 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40191MF_01638128, 1, (STRLEN(?templateMotifCigarP40191MF_01638128) - STRLEN(REPLACE(?templateMotifCigarP40191MF_01638128, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP40191129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40191MF_01638130, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638130) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40191MF_01638130, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638130) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01638131) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionP40191148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40191150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40191MF_01638143 .
?templateMotifSequenceMatchRegionP40191148 faldo:begin ?templateMotifSequenceMatchBeginP40191149 .
?templateMotifSequenceMatchBeginP40191149 faldo:position ?templateMotifSequenceMatchBeginPositionP40191144 ;
faldo:reference isoform:P40191-1 .
?templateMotifSequenceProfileAlignmentOperationP40191150 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01638154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40191MF_01638145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01638153 .
?targetMotifMatchRegionMatchBeginMF_01638153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01638146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01638154 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40191MF_01638143, 1, (STRLEN(?templateMotifCigarP40191MF_01638143) - STRLEN(REPLACE(?templateMotifCigarP40191MF_01638143, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP40191144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40191MF_01638145, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638145) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40191MF_01638145, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638145) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01638146) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionP40191163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40191165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40191MF_01638158 .
?templateMotifSequenceMatchRegionP40191163 faldo:begin ?templateMotifSequenceMatchBeginP40191164 .
?templateMotifSequenceMatchBeginP40191164 faldo:position ?templateMotifSequenceMatchBeginPositionP40191159 ;
faldo:reference isoform:P40191-1 .
?templateMotifSequenceProfileAlignmentOperationP40191165 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01638169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40191MF_01638160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01638168 .
?targetMotifMatchRegionMatchBeginMF_01638168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01638161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01638169 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40191MF_01638158, 1, (STRLEN(?templateMotifCigarP40191MF_01638158) - STRLEN(REPLACE(?templateMotifCigarP40191MF_01638158, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP40191159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40191MF_01638160, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638160) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40191MF_01638160, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638160) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_01638161) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionP40191178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40191180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40191MF_01638173 .
?templateMotifSequenceMatchRegionP40191178 faldo:begin ?templateMotifSequenceMatchBeginP40191179 .
?templateMotifSequenceMatchBeginP40191179 faldo:position ?templateMotifSequenceMatchBeginPositionP40191174 ;
faldo:reference isoform:P40191-1 .
?templateMotifSequenceProfileAlignmentOperationP40191180 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01638184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40191MF_01638175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01638183 .
?targetMotifMatchRegionMatchBeginMF_01638183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01638176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01638184 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40191MF_01638173, 1, (STRLEN(?templateMotifCigarP40191MF_01638173) - STRLEN(REPLACE(?templateMotifCigarP40191MF_01638173, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP40191174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40191MF_01638175, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638175) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40191MF_01638175, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638175) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_01638176) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionP40191193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40191195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40191MF_01638188 .
?templateMotifSequenceMatchRegionP40191193 faldo:begin ?templateMotifSequenceMatchBeginP40191194 .
?templateMotifSequenceMatchBeginP40191194 faldo:position ?templateMotifSequenceMatchBeginPositionP40191189 ;
faldo:reference isoform:P40191-1 .
?templateMotifSequenceProfileAlignmentOperationP40191195 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01638199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40191MF_01638190 .
?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01638198 .
?targetMotifMatchRegionMatchBeginMF_01638198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01638191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01638199 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40191MF_01638188, 1, (STRLEN(?templateMotifCigarP40191MF_01638188) - STRLEN(REPLACE(?templateMotifCigarP40191MF_01638188, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP40191189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40191MF_01638190, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638190) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40191MF_01638190, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638190) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_01638191) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t202) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionP40191208 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40191210 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40191MF_01638203 .
?templateMotifSequenceMatchRegionP40191208 faldo:begin ?templateMotifSequenceMatchBeginP40191209 .
?templateMotifSequenceMatchBeginP40191209 faldo:position ?templateMotifSequenceMatchBeginPositionP40191204 ;
faldo:reference isoform:P40191-1 .
?templateMotifSequenceProfileAlignmentOperationP40191210 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01638214 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40191MF_01638205 .
?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01638213 .
?targetMotifMatchRegionMatchBeginMF_01638213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01638206 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01638214 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40191MF_01638203, 1, (STRLEN(?templateMotifCigarP40191MF_01638203) - STRLEN(REPLACE(?templateMotifCigarP40191MF_01638203, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP40191204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40191MF_01638205, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638205) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40191MF_01638205, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638205) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_01638206) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t217) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionP40191223 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40191225 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40191MF_01638218 .
?templateMotifSequenceMatchRegionP40191223 faldo:begin ?templateMotifSequenceMatchBeginP40191224 .
?templateMotifSequenceMatchBeginP40191224 faldo:position ?templateMotifSequenceMatchBeginPositionP40191219 ;
faldo:reference isoform:P40191-1 .
?templateMotifSequenceProfileAlignmentOperationP40191225 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01638229 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40191MF_01638220 .
?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01638228 .
?targetMotifMatchRegionMatchBeginMF_01638228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01638221 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01638229 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40191MF_01638218, 1, (STRLEN(?templateMotifCigarP40191MF_01638218) - STRLEN(REPLACE(?templateMotifCigarP40191MF_01638218, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionP40191219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40191MF_01638220, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638220) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40191MF_01638220, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638220) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_01638221) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t232) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch237 faldo:location ?templateMotifSequenceMatchRegionP40191238 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40191240 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40191MF_01638233 .
?templateMotifSequenceMatchRegionP40191238 faldo:begin ?templateMotifSequenceMatchBeginP40191239 .
?templateMotifSequenceMatchBeginP40191239 faldo:position ?templateMotifSequenceMatchBeginPositionP40191234 ;
faldo:reference isoform:P40191-1 .
?templateMotifSequenceProfileAlignmentOperationP40191240 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
?targetMotifMatch241 faldo:location ?targetMotifMatchRegionMatch242 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01638244 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40191MF_01638235 .
?targetMotifMatchRegionMatch242 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01638243 .
?targetMotifMatchRegionMatchBeginMF_01638243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01638236 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01638244 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40191MF_01638233, 1, (STRLEN(?templateMotifCigarP40191MF_01638233) - STRLEN(REPLACE(?templateMotifCigarP40191MF_01638233, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP40191234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1245) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40191MF_01638235, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638235) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40191MF_01638235, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638235) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), '')))), '[^-]', ''))) AS ?step2246) .
BIND(((?step2246 + ?targetMotifMatchRegionMatchBeginPositionMF_01638236) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t247) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch252 faldo:location ?templateMotifSequenceMatchRegionP40191253 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40191255 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40191MF_01638248 .
?templateMotifSequenceMatchRegionP40191253 faldo:begin ?templateMotifSequenceMatchBeginP40191254 .
?templateMotifSequenceMatchBeginP40191254 faldo:position ?templateMotifSequenceMatchBeginPositionP40191249 ;
faldo:reference isoform:P40191-1 .
?templateMotifSequenceProfileAlignmentOperationP40191255 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
?targetMotifMatch256 faldo:location ?targetMotifMatchRegionMatch257 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01638259 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40191MF_01638250 .
?targetMotifMatchRegionMatch257 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01638258 .
?targetMotifMatchRegionMatchBeginMF_01638258 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01638251 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01638259 edam:has_input signature:MF_01638 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40191MF_01638248, 1, (STRLEN(?templateMotifCigarP40191MF_01638248) - STRLEN(REPLACE(?templateMotifCigarP40191MF_01638248, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP40191249) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40191MF_01638250, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638250) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40191MF_01638250, 1, (STRLEN(?targetMotifMatchCigarP40191MF_01638250) - STRLEN(REPLACE(?targetMotifMatchCigarP40191MF_01638250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_01638251) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs1t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01638a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
}
"xsd:string |
