| http://purl.uniprot.org/unirules/MF_01682#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:614268 up:source unirule:MF_01682 .
_:614269 up:source unirule:MF_01682 .
_:614270 up:source unirule:MF_01682 .
_:614271 up:source unirule:MF_01682 .
_:614272 up:source unirule:MF_01682 .
_:614273 up:source unirule:MF_01682 .
_:614274 up:source unirule:MF_01682 .
_:614275 up:source unirule:MF_01682 .
_:614276 up:source unirule:MF_01682 .
_:614277 up:source unirule:MF_01682 .
_:614278 up:source unirule:MF_01682 .
_:614279 up:source unirule:MF_01682 .
_:614280 up:source unirule:MF_01682 .
_:614281 up:source unirule:MF_01682 .
_:614282 up:source unirule:MF_01682 .
_:614283 up:source unirule:MF_01682 .
_:614284 up:source unirule:MF_01682 .
_:614285 up:source unirule:MF_01682 .
_:614286 up:source unirule:MF_01682 .
_:614287 up:source unirule:MF_01682 .
_:614288 up:source unirule:MF_01682 .
_:614289 up:source unirule:MF_01682 .
_:614290 up:source unirule:MF_01682 .
_:614291 up:source unirule:MF_01682 .
_:614292 up:source unirule:MF_01682 .
_:614293 up:source unirule:MF_01682 .
_:614294 up:source unirule:MF_01682 .
_:614295 up:source unirule:MF_01682 .
_:614296 up:source unirule:MF_01682 .
_:614297 up:source unirule:MF_01682 .
_:614298 up:source unirule:MF_01682 .
_:614299 up:source unirule:MF_01682 .
_:614300 up:source unirule:MF_01682 .
_:614301 up:source unirule:MF_01682 .
_:614302 up:source unirule:MF_01682 .
_:614303 up:source unirule:MF_01682 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation13 ,
?annotation14 ;
up:classifiedWith GO:0005506 ,
GO:0010308 ,
GO:0010309 ,
GO:0016151 ,
GO:0019509 ,
keyword:223 ,
keyword:28 ,
keyword:408 ,
keyword:479 ,
keyword:486 ,
keyword:533 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Acireductone dioxygenase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase' ;
up:shortName 'DHK-MTPene dioxygenase' ;
rdf:type up:Structured_Name .
?name2 up:ecName '1.13.11.54' ;
up:fullName 'Acireductone dioxygenase (Fe(2+)-requiring)' ;
up:shortName "ARD'" ,
'Fe-ARD' ;
rdf:type up:Structured_Name .
?name3 up:ecName '1.13.11.53' ;
up:fullName 'Acireductone dioxygenase (Ni(2+)-requiring)' ;
up:shortName 'ARD' ,
'Ni-ARD' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'mtnD' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4-methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 up:cofactor chebi:29033 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Fe(2+) cation per monomer.' .
?annotation11 up:cofactor chebi:49786 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 nickel ion per monomer.' .
?annotation12 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 5/6.' .
?annotation13 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation14 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the acireductone dioxygenase (ARD) family.' .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:29033 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:49786 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29033 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:49786 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:29033 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:49786 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:29033 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:49786 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'May play a role in metal incorporation in vivo' .
?pfsb73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'May play a role in transmitting local conformational changes' .
?pfsb79 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important to generate the dianion' .
?pfsb85 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
_:614304 a rdf:Statement ;
up:attribution _:614268 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:614305 a rdf:Statement ;
up:attribution _:614269 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:614306 a rdf:Statement ;
up:attribution _:614270 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:614307 a rdf:Statement ;
up:attribution _:614271 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:614308 a rdf:Statement ;
up:attribution _:614272 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:614309 a rdf:Statement ;
up:attribution _:614273 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:614310 a rdf:Statement ;
up:attribution _:614274 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:614311 a rdf:Statement ;
up:attribution _:614275 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:614312 a rdf:Statement ;
up:attribution _:614276 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:614313 a rdf:Statement ;
up:attribution _:614277 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:614314 a rdf:Statement ;
up:attribution _:614278 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:614315 a rdf:Statement ;
up:attribution _:614279 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:614316 a rdf:Statement ;
up:attribution _:614280 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:614317 a rdf:Statement ;
up:attribution _:614281 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:614318 a rdf:Statement ;
up:attribution _:614282 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:223 .
_:614319 a rdf:Statement ;
up:attribution _:614283 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:614320 a rdf:Statement ;
up:attribution _:614284 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:614321 a rdf:Statement ;
up:attribution _:614285 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:486 .
_:614322 a rdf:Statement ;
up:attribution _:614286 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:533 .
_:614323 a rdf:Statement ;
up:attribution _:614287 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:614324 a rdf:Statement ;
up:attribution _:614288 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:614325 a rdf:Statement ;
up:attribution _:614289 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010308 .
_:614326 a rdf:Statement ;
up:attribution _:614290 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010309 .
_:614327 a rdf:Statement ;
up:attribution _:614291 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016151 .
_:614328 a rdf:Statement ;
up:attribution _:614292 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019509 .
_:614329 a rdf:Statement ;
up:source unirule:MF_01682 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:614330 a rdf:Statement ;
up:attribution _:614293 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:614331 a rdf:Statement ;
up:source unirule:MF_01682 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:614332 a rdf:Statement ;
up:attribution _:614294 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:614333 a rdf:Statement ;
up:source unirule:MF_01682 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:614334 a rdf:Statement ;
up:attribution _:614295 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:614335 a rdf:Statement ;
up:source unirule:MF_01682 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:614336 a rdf:Statement ;
up:attribution _:614296 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:614337 a rdf:Statement ;
up:source unirule:MF_01682 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:614338 a rdf:Statement ;
up:attribution _:614297 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:614339 a rdf:Statement ;
up:source unirule:MF_01682 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:614340 a rdf:Statement ;
up:attribution _:614298 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:614341 a rdf:Statement ;
up:source unirule:MF_01682 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:614342 a rdf:Statement ;
up:attribution _:614299 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:614343 a rdf:Statement ;
up:source unirule:MF_01682 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:614344 a rdf:Statement ;
up:attribution _:614300 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:614345 a rdf:Statement ;
up:source unirule:MF_01682 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:614346 a rdf:Statement ;
up:attribution _:614301 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:614347 a rdf:Statement ;
up:source unirule:MF_01682 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:614348 a rdf:Statement ;
up:attribution _:614302 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:614349 a rdf:Statement ;
up:source unirule:MF_01682 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:614350 a rdf:Statement ;
up:attribution _:614303 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01682
#Rule MF_01682 Created by:? on:2008-11-04 Modified by:Catherine Rivoire on:2024-04-30
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01682 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01682a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a14')) AS ?annotation14) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionQ9ZFE794 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZFE796 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZFE7MF_0168289 .
?templateMotifSequenceMatchRegionQ9ZFE794 faldo:begin ?templateMotifSequenceMatchBeginQ9ZFE795 .
?templateMotifSequenceMatchBeginQ9ZFE795 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZFE790 ;
faldo:reference isoform:Q9ZFE7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZFE796 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01682100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZFE7MF_0168291 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0168299 .
?targetMotifMatchRegionMatchBeginMF_0168299 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0168292 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01682100 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZFE7MF_0168289, 1, (STRLEN(?templateMotifCigarQ9ZFE7MF_0168289) - STRLEN(REPLACE(?templateMotifCigarQ9ZFE7MF_0168289, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionQ9ZFE790) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_0168291, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_0168291) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_0168291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_0168291, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_0168291) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_0168291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0168292) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionQ9ZFE7109 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZFE7111 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZFE7MF_01682104 .
?templateMotifSequenceMatchRegionQ9ZFE7109 faldo:begin ?templateMotifSequenceMatchBeginQ9ZFE7110 .
?templateMotifSequenceMatchBeginQ9ZFE7110 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZFE7105 ;
faldo:reference isoform:Q9ZFE7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZFE7111 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01682115 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZFE7MF_01682106 .
?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01682114 .
?targetMotifMatchRegionMatchBeginMF_01682114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01682107 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01682115 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZFE7MF_01682104, 1, (STRLEN(?templateMotifCigarQ9ZFE7MF_01682104) - STRLEN(REPLACE(?templateMotifCigarQ9ZFE7MF_01682104, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionQ9ZFE7105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682106, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682106, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01682107) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionQ9ZFE7124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZFE7126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZFE7MF_01682119 .
?templateMotifSequenceMatchRegionQ9ZFE7124 faldo:begin ?templateMotifSequenceMatchBeginQ9ZFE7125 .
?templateMotifSequenceMatchBeginQ9ZFE7125 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZFE7120 ;
faldo:reference isoform:Q9ZFE7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZFE7126 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01682130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZFE7MF_01682121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01682129 .
?targetMotifMatchRegionMatchBeginMF_01682129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01682122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01682130 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZFE7MF_01682119, 1, (STRLEN(?templateMotifCigarQ9ZFE7MF_01682119) - STRLEN(REPLACE(?templateMotifCigarQ9ZFE7MF_01682119, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionQ9ZFE7120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682121, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682121, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01682122) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionQ9ZFE7139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZFE7141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZFE7MF_01682134 .
?templateMotifSequenceMatchRegionQ9ZFE7139 faldo:begin ?templateMotifSequenceMatchBeginQ9ZFE7140 .
?templateMotifSequenceMatchBeginQ9ZFE7140 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZFE7135 ;
faldo:reference isoform:Q9ZFE7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZFE7141 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01682145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZFE7MF_01682136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01682144 .
?targetMotifMatchRegionMatchBeginMF_01682144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01682137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01682145 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZFE7MF_01682134, 1, (STRLEN(?templateMotifCigarQ9ZFE7MF_01682134) - STRLEN(REPLACE(?templateMotifCigarQ9ZFE7MF_01682134, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionQ9ZFE7135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682136, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682136) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682136, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682136) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01682137) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionQ9ZFE7154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZFE7156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZFE7MF_01682149 .
?templateMotifSequenceMatchRegionQ9ZFE7154 faldo:begin ?templateMotifSequenceMatchBeginQ9ZFE7155 .
?templateMotifSequenceMatchBeginQ9ZFE7155 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZFE7150 ;
faldo:reference isoform:Q9ZFE7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZFE7156 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01682160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZFE7MF_01682151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01682159 .
?targetMotifMatchRegionMatchBeginMF_01682159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01682152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01682160 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZFE7MF_01682149, 1, (STRLEN(?templateMotifCigarQ9ZFE7MF_01682149) - STRLEN(REPLACE(?templateMotifCigarQ9ZFE7MF_01682149, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionQ9ZFE7150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682151, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682151, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01682152) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionQ9ZFE7169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZFE7171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZFE7MF_01682164 .
?templateMotifSequenceMatchRegionQ9ZFE7169 faldo:begin ?templateMotifSequenceMatchBeginQ9ZFE7170 .
?templateMotifSequenceMatchBeginQ9ZFE7170 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZFE7165 ;
faldo:reference isoform:Q9ZFE7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZFE7171 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01682175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZFE7MF_01682166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01682174 .
?targetMotifMatchRegionMatchBeginMF_01682174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01682167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01682175 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZFE7MF_01682164, 1, (STRLEN(?templateMotifCigarQ9ZFE7MF_01682164) - STRLEN(REPLACE(?templateMotifCigarQ9ZFE7MF_01682164, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionQ9ZFE7165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682166, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682166) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682166, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682166) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_01682167) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionQ9ZFE7184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZFE7186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZFE7MF_01682179 .
?templateMotifSequenceMatchRegionQ9ZFE7184 faldo:begin ?templateMotifSequenceMatchBeginQ9ZFE7185 .
?templateMotifSequenceMatchBeginQ9ZFE7185 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZFE7180 ;
faldo:reference isoform:Q9ZFE7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZFE7186 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01682190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZFE7MF_01682181 .
?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01682189 .
?targetMotifMatchRegionMatchBeginMF_01682189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01682182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01682190 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZFE7MF_01682179, 1, (STRLEN(?templateMotifCigarQ9ZFE7MF_01682179) - STRLEN(REPLACE(?templateMotifCigarQ9ZFE7MF_01682179, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionQ9ZFE7180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682181, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682181) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682181, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682181) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) .
BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_01682182) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t193) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch198 faldo:location ?templateMotifSequenceMatchRegionQ9ZFE7199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZFE7201 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZFE7MF_01682194 .
?templateMotifSequenceMatchRegionQ9ZFE7199 faldo:begin ?templateMotifSequenceMatchBeginQ9ZFE7200 .
?templateMotifSequenceMatchBeginQ9ZFE7200 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZFE7195 ;
faldo:reference isoform:Q9ZFE7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZFE7201 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
?targetMotifMatch202 faldo:location ?targetMotifMatchRegionMatch203 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01682205 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZFE7MF_01682196 .
?targetMotifMatchRegionMatch203 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01682204 .
?targetMotifMatchRegionMatchBeginMF_01682204 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01682197 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01682205 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZFE7MF_01682194, 1, (STRLEN(?templateMotifCigarQ9ZFE7MF_01682194) - STRLEN(REPLACE(?templateMotifCigarQ9ZFE7MF_01682194, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionQ9ZFE7195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682196, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682196) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682196, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682196) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_01682197) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch213 faldo:location ?templateMotifSequenceMatchRegionQ9ZFE7214 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZFE7216 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZFE7MF_01682209 .
?templateMotifSequenceMatchRegionQ9ZFE7214 faldo:begin ?templateMotifSequenceMatchBeginQ9ZFE7215 .
?templateMotifSequenceMatchBeginQ9ZFE7215 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZFE7210 ;
faldo:reference isoform:Q9ZFE7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZFE7216 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
?targetMotifMatch217 faldo:location ?targetMotifMatchRegionMatch218 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01682220 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZFE7MF_01682211 .
?targetMotifMatchRegionMatch218 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01682219 .
?targetMotifMatchRegionMatchBeginMF_01682219 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01682212 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01682220 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZFE7MF_01682209, 1, (STRLEN(?templateMotifCigarQ9ZFE7MF_01682209) - STRLEN(REPLACE(?templateMotifCigarQ9ZFE7MF_01682209, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionQ9ZFE7210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682211, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682211) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682211, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682211) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) .
BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_01682212) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t223) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch228 faldo:location ?templateMotifSequenceMatchRegionQ9ZFE7229 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZFE7231 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZFE7MF_01682224 .
?templateMotifSequenceMatchRegionQ9ZFE7229 faldo:begin ?templateMotifSequenceMatchBeginQ9ZFE7230 .
?templateMotifSequenceMatchBeginQ9ZFE7230 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZFE7225 ;
faldo:reference isoform:Q9ZFE7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZFE7231 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
?targetMotifMatch232 faldo:location ?targetMotifMatchRegionMatch233 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01682235 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZFE7MF_01682226 .
?targetMotifMatchRegionMatch233 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01682234 .
?targetMotifMatchRegionMatchBeginMF_01682234 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01682227 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01682235 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZFE7MF_01682224, 1, (STRLEN(?templateMotifCigarQ9ZFE7MF_01682224) - STRLEN(REPLACE(?templateMotifCigarQ9ZFE7MF_01682224, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionQ9ZFE7225) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682226, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682226) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682226, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682226) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_01682227) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs1t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionQ9ZFE7244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZFE7246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZFE7MF_01682239 .
?templateMotifSequenceMatchRegionQ9ZFE7244 faldo:begin ?templateMotifSequenceMatchBeginQ9ZFE7245 .
?templateMotifSequenceMatchBeginQ9ZFE7245 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZFE7240 ;
faldo:reference isoform:Q9ZFE7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZFE7246 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01682250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZFE7MF_01682241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01682249 .
?targetMotifMatchRegionMatchBeginMF_01682249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01682242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01682250 edam:has_input signature:MF_01682 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZFE7MF_01682239, 1, (STRLEN(?templateMotifCigarQ9ZFE7MF_01682239) - STRLEN(REPLACE(?templateMotifCigarQ9ZFE7MF_01682239, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionQ9ZFE7240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682241, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682241) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZFE7MF_01682241, 1, (STRLEN(?targetMotifMatchCigarQ9ZFE7MF_01682241) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZFE7MF_01682241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_01682242) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs1t253) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse86) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01682a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
}
"xsd:string |
