| http://purl.uniprot.org/unirules/MF_01983#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:699639 up:source unirule:MF_01983 .
_:699640 up:source unirule:MF_01983 .
_:699641 up:source unirule:MF_01983 .
_:699642 up:source unirule:MF_01983 .
_:699643 up:source unirule:MF_01983 .
_:699644 up:source unirule:MF_01983 .
_:699645 up:source unirule:MF_01983 .
_:699646 up:source unirule:MF_01983 .
_:699647 up:source unirule:MF_01983 .
_:699648 up:source unirule:MF_01983 .
_:699649 up:source unirule:MF_01983 .
_:699650 up:source unirule:MF_01983 .
_:699651 up:source unirule:MF_01983 .
_:699652 up:source unirule:MF_01983 .
_:699653 up:source unirule:MF_01983 .
_:699654 up:source unirule:MF_01983 .
_:699655 up:source unirule:MF_01983 .
_:699656 up:source unirule:MF_01983 .
_:699657 up:source unirule:MF_01983 .
_:699658 up:source unirule:MF_01983 .
_:699659 up:source unirule:MF_01983 .
_:699660 up:source unirule:MF_01983 .
_:699661 up:source unirule:MF_01983 .
_:699662 up:source unirule:MF_01983 .
_:699663 up:source unirule:MF_01983 .
_:699664 up:source unirule:MF_01983 .
_:699665 up:source unirule:MF_01983 .
_:699666 up:source unirule:MF_01983 .
_:699667 up:source unirule:MF_01983 .
_:699668 up:source unirule:MF_01983 .
_:699669 up:source unirule:MF_01983 .
_:699670 up:source unirule:MF_01983 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0016831 ,
keyword:210 ,
keyword:285 ,
keyword:288 ,
keyword:456 ,
keyword:464 ,
keyword:479 ,
keyword:58 ,
keyword:630 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.1.93' ;
up:fullName 'Pyrrole-2-carboxylic acid decarboxylase' ;
up:shortName 'P2C decarboxylase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the prenyl-FMN-dependent decarboxylation of pyrrole-2-carboxylate (P2C). Can also catalyze the carboxylation of pyrrole in the presence of elevated concentrations of CO(2) or bicarbonate.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:87746 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 prenylated FMN per subunit.' .
?annotation7 up:cofactor chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mn(2+) per subunit.' .
?annotation8 up:cofactor chebi:29103 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 K(+) per subunit.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the UbiD family. UbiD-like/FDC subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29103 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:87746 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:87746 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:87746 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:29035 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:87746 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:29103 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:29103 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf chebi:29103 .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf chebi:29103 .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
up:ligand ?ligand91 ;
rdf:type up:Binding_Site_Annotation .
?pfsb89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand91 rdfs:subClassOf chebi:29035 .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
up:ligand ?ligand98 ;
rdf:type up:Binding_Site_Annotation .
?pfsb96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?ligand98 rdfs:subClassOf chebi:87746 .
?pfs101 up:annotation ?annotation102 .
?annotation102 faldo:begin ?pfsb103 ;
faldo:end ?pfse104 ;
up:ligand ?ligand105 ;
rdf:type up:Binding_Site_Annotation .
?pfsb103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?pfse104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?ligand105 rdfs:subClassOf chebi:87746 .
_:699671 a rdf:Statement ;
up:attribution _:699639 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:699672 a rdf:Statement ;
up:attribution _:699640 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:699673 a rdf:Statement ;
up:attribution _:699641 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:699674 a rdf:Statement ;
up:attribution _:699642 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:699675 a rdf:Statement ;
up:attribution _:699643 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:699676 a rdf:Statement ;
up:attribution _:699644 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:699677 a rdf:Statement ;
up:attribution _:699645 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:699678 a rdf:Statement ;
up:attribution _:699646 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:699679 a rdf:Statement ;
up:attribution _:699647 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:699680 a rdf:Statement ;
up:attribution _:699648 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:58 .
_:699681 a rdf:Statement ;
up:attribution _:699649 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:210 .
_:699682 a rdf:Statement ;
up:attribution _:699650 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:699683 a rdf:Statement ;
up:attribution _:699651 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:699684 a rdf:Statement ;
up:attribution _:699652 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:699685 a rdf:Statement ;
up:attribution _:699653 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:699686 a rdf:Statement ;
up:attribution _:699654 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:699687 a rdf:Statement ;
up:attribution _:699655 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:630 .
_:699688 a rdf:Statement ;
up:attribution _:699656 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016831 .
_:699689 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:699690 a rdf:Statement ;
up:attribution _:699657 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:699691 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:699692 a rdf:Statement ;
up:attribution _:699658 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:699693 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:699694 a rdf:Statement ;
up:attribution _:699659 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:699695 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:699696 a rdf:Statement ;
up:attribution _:699660 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:699697 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:699698 a rdf:Statement ;
up:attribution _:699661 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:699699 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:699700 a rdf:Statement ;
up:attribution _:699662 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:699701 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:699702 a rdf:Statement ;
up:attribution _:699663 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:699703 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:699704 a rdf:Statement ;
up:attribution _:699664 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:699705 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:699706 a rdf:Statement ;
up:attribution _:699665 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:699707 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:699708 a rdf:Statement ;
up:attribution _:699666 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:699709 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:699710 a rdf:Statement ;
up:attribution _:699667 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:699711 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:699712 a rdf:Statement ;
up:attribution _:699668 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:699713 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:699714 a rdf:Statement ;
up:attribution _:699669 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:699715 a rdf:Statement ;
up:source unirule:MF_01983 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:699716 a rdf:Statement ;
up:attribution _:699670 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01983
#Rule MF_01983 Created by:? on:2015-09-01 Modified by:Elisabeth Coudert on:2024-09-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01983 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01983a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983108 .
?templateMotifSequenceMatchRegionQ9I6N5113 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5114 .
?templateMotifSequenceMatchBeginQ9I6N5114 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5109 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5115 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983118 .
?targetMotifMatchRegionMatchBeginMF_01983118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983119 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983108, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983108) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983108, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionQ9I6N5109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983110, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983110) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983110, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983110) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_01983111) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983123 .
?templateMotifSequenceMatchRegionQ9I6N5128 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5129 .
?templateMotifSequenceMatchBeginQ9I6N5129 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5124 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5130 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983133 .
?targetMotifMatchRegionMatchBeginMF_01983133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983134 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983123, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983123) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983123, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionQ9I6N5124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983125, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983125) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983125, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983125) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_01983126) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983138 .
?templateMotifSequenceMatchRegionQ9I6N5143 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5144 .
?templateMotifSequenceMatchBeginQ9I6N5144 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5139 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5145 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983148 .
?targetMotifMatchRegionMatchBeginMF_01983148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983149 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983138, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983138) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983138, CONCAT('^(?:-*[^-]){', STR(((168 - ?templateMotifSequenceMatchBeginPositionQ9I6N5139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983140, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983140, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_01983141) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'V')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983153 .
?templateMotifSequenceMatchRegionQ9I6N5158 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5159 .
?templateMotifSequenceMatchBeginQ9I6N5159 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5154 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5160 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983163 .
?targetMotifMatchRegionMatchBeginMF_01983163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983164 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983153, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983153) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983153, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionQ9I6N5154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983155, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983155, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_01983156) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983168 .
?templateMotifSequenceMatchRegionQ9I6N5173 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5174 .
?templateMotifSequenceMatchBeginQ9I6N5174 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5169 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5175 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983178 .
?targetMotifMatchRegionMatchBeginMF_01983178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983179 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983168, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983168) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983168, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionQ9I6N5169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983170, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983170) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983170, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983170) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_01983171) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983183 .
?templateMotifSequenceMatchRegionQ9I6N5188 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5189 .
?templateMotifSequenceMatchBeginQ9I6N5189 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5184 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5190 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983193 .
?targetMotifMatchRegionMatchBeginMF_01983193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983194 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983183, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983183) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983183, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionQ9I6N5184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983185, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983185) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983185, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983185) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_01983186) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983198 .
?templateMotifSequenceMatchRegionQ9I6N5203 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5204 .
?templateMotifSequenceMatchBeginQ9I6N5204 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5199 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5205 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983208 .
?targetMotifMatchRegionMatchBeginMF_01983208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983209 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983198, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983198) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983198, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionQ9I6N5199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983200, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983200) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983200, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983200) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_01983201) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983213 .
?templateMotifSequenceMatchRegionQ9I6N5218 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5219 .
?templateMotifSequenceMatchBeginQ9I6N5219 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5214 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5220 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983215 .
?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983223 .
?targetMotifMatchRegionMatchBeginMF_01983223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983224 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983213, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983213) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983213, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionQ9I6N5214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983215, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983215) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983215, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983215) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_01983216) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983228 .
?templateMotifSequenceMatchRegionQ9I6N5233 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5234 .
?templateMotifSequenceMatchBeginQ9I6N5234 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5229 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5235 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983230 .
?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983238 .
?targetMotifMatchRegionMatchBeginMF_01983238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983239 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983228, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983228) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983228, CONCAT('^(?:-*[^-]){', STR(((219 - ?templateMotifSequenceMatchBeginPositionQ9I6N5229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983230, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983230) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983230, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983230) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) .
BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_01983231) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t242) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch247 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5248 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5250 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983243 .
?templateMotifSequenceMatchRegionQ9I6N5248 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5249 .
?templateMotifSequenceMatchBeginQ9I6N5249 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5244 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5250 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch251 faldo:location ?targetMotifMatchRegionMatch252 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983254 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983245 .
?targetMotifMatchRegionMatch252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983253 .
?targetMotifMatchRegionMatchBeginMF_01983253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983246 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983254 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983243, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983243) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983243, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionQ9I6N5244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983245, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983245) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983245, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983245) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) .
BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_01983246) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t257) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch262 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5263 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5265 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983258 .
?templateMotifSequenceMatchRegionQ9I6N5263 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5264 .
?templateMotifSequenceMatchBeginQ9I6N5264 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5259 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5265 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch266 faldo:location ?targetMotifMatchRegionMatch267 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983269 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983260 .
?targetMotifMatchRegionMatch267 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983268 .
?targetMotifMatchRegionMatchBeginMF_01983268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983261 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983269 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983258, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983258) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983258, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionQ9I6N5259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983260, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983260) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983260, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983260) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) .
BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_01983261) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t272) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch277 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5278 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5280 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983273 .
?templateMotifSequenceMatchRegionQ9I6N5278 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5279 .
?templateMotifSequenceMatchBeginQ9I6N5279 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5274 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5280 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch281 faldo:location ?targetMotifMatchRegionMatch282 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983284 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983275 .
?targetMotifMatchRegionMatch282 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983283 .
?targetMotifMatchRegionMatchBeginMF_01983283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983276 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983284 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983273, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983273) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983273, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionQ9I6N5274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1285) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983275, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983275) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983275, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983275) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), '')))), '[^-]', ''))) AS ?step2286) .
BIND(((?step2286 + ?targetMotifMatchRegionMatchBeginPositionMF_01983276) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t287) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch292 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5293 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5295 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983288 .
?templateMotifSequenceMatchRegionQ9I6N5293 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5294 .
?templateMotifSequenceMatchBeginQ9I6N5294 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5289 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5295 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch296 faldo:location ?targetMotifMatchRegionMatch297 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983299 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983290 .
?targetMotifMatchRegionMatch297 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983298 .
?targetMotifMatchRegionMatchBeginMF_01983298 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983291 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983299 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983288, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983288) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983288, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionQ9I6N5289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1300) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983290, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983290) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983290, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983290) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), '')))), '[^-]', ''))) AS ?step2301) .
BIND(((?step2301 + ?targetMotifMatchRegionMatchBeginPositionMF_01983291) - 1) AS ?thisPositionOn99) .
BIND(?thisPositionOn99 AS ?thisPositionOn100) .
BIND(?this AS ?pfs1t302) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch307 faldo:location ?templateMotifSequenceMatchRegionQ9I6N5308 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6N5310 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6N5MF_01983303 .
?templateMotifSequenceMatchRegionQ9I6N5308 faldo:begin ?templateMotifSequenceMatchBeginQ9I6N5309 .
?templateMotifSequenceMatchBeginQ9I6N5309 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6N5304 ;
faldo:reference isoform:Q9I6N5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6N5310 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
?targetMotifMatch311 faldo:location ?targetMotifMatchRegionMatch312 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01983314 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6N5MF_01983305 .
?targetMotifMatchRegionMatch312 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01983313 .
?targetMotifMatchRegionMatchBeginMF_01983313 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01983306 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01983314 edam:has_input signature:MF_01983 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6N5MF_01983303, 1, (STRLEN(?templateMotifCigarQ9I6N5MF_01983303) - STRLEN(REPLACE(?templateMotifCigarQ9I6N5MF_01983303, CONCAT('^(?:-*[^-]){', STR(((386 - ?templateMotifSequenceMatchBeginPositionQ9I6N5304) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1315) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983305, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983305) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1315), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6N5MF_01983305, 1, (STRLEN(?targetMotifMatchCigarQ9I6N5MF_01983305) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6N5MF_01983305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1315), '}'), '')))), '[^-]', ''))) AS ?step2316) .
BIND(((?step2316 + ?targetMotifMatchRegionMatchBeginPositionMF_01983306) - 1) AS ?thisPositionOn106) .
BIND(?thisPositionOn106 AS ?thisPositionOn107) .
BIND(?this AS ?pfs1t317) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn106, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01983a102')) AS ?annotation102) .
BIND(?this AS ?pfs101) .
}
}
"xsd:string |
