| http://purl.uniprot.org/unirules/MF_02241#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:775232 up:source unirule:MF_02241 .
_:775233 up:source unirule:MF_02241 .
_:775234 up:source unirule:MF_02241 .
_:775235 up:source unirule:MF_02241 .
_:775236 up:source unirule:MF_02241 .
_:775237 up:source unirule:MF_02241 .
_:775238 up:source unirule:MF_02241 .
_:775239 up:source unirule:MF_02241 .
_:775240 up:source unirule:MF_02241 .
_:775241 up:source unirule:MF_02241 .
_:775242 up:source unirule:MF_02241 .
_:775243 up:source unirule:MF_02241 .
_:775244 up:source unirule:MF_02241 .
_:775245 up:source unirule:MF_02241 .
_:775246 up:source unirule:MF_02241 .
_:775247 up:source unirule:MF_02241 .
_:775248 up:source unirule:MF_02241 .
_:775249 up:source unirule:MF_02241 .
_:775250 up:source unirule:MF_02241 .
_:775251 up:source unirule:MF_02241 .
_:775252 up:source unirule:MF_02241 .
_:775253 up:source unirule:MF_02241 .
_:775254 up:source unirule:MF_02241 .
_:775255 up:source unirule:MF_02241 .
_:775256 up:source unirule:MF_02241 .
_:775257 up:source unirule:MF_02241 .
_:775258 up:source unirule:MF_02241 .
_:775259 up:source unirule:MF_02241 .
_:775260 up:source unirule:MF_02241 .
_:775261 up:source unirule:MF_02241 .
_:775262 up:source unirule:MF_02241 .
_:775263 up:source unirule:MF_02241 .
_:775264 up:source unirule:MF_02241 .
_:775265 up:source unirule:MF_02241 .
_:775266 up:source unirule:MF_02241 .
_:775267 up:source unirule:MF_02241 .
_:775268 up:source unirule:MF_02241 .
_:775269 up:source unirule:MF_02241 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0000287 ,
GO:0005886 ,
GO:0008654 ,
GO:0016780 ,
keyword:1003 ,
keyword:1133 ,
keyword:1208 ,
keyword:444 ,
keyword:460 ,
keyword:472 ,
keyword:479 ,
keyword:594 ,
keyword:808 ,
keyword:812 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.8.-' ;
up:fullName 'Phosphatidylinositol phosphate synthase' ;
up:shortName 'PIP synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'CDP-diacylglycerol--D-myo-inositol-3-phosphate 3-phosphatidyltransferase' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment "Catalyzes the conjugation of the 1'-hydroxyl group of D-myo-inositol-3-phosphate (also named L-myo-inositol-1-phosphate) with a lipid tail of cytidine diphosphate diacylglycerol (CDP-DAG), forming phosphatidylinositol phosphate (PIP) and CMP. PIP is a precursor of phosphatidylinositol (PI) which is an essential lipid required for cell wall formation." .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity .
?annotation7 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Contains a di-nuclear catalytic Mg(2+) center.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Phospholipid metabolism; phosphatidylinositol phosphate biosynthesis.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the CDP-alcohol phosphatidyltransferase class-I family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:58332 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:18420 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:18420 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:18420 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:18420 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:18420 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:18420 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:58332 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:58332 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:58332 .
?sam89 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane90 faldo:begin ?transmembraneb91 ;
faldo:end ?transmembranee92 .
?transmembraneb91 faldo:position ?transmembranebp93 .
?transmembranee92 faldo:position ?transmembraneep94 .
?keyword95 up:range ?transmembrane90 .
?keyword96 up:range ?transmembrane90 .
?keyword97 up:range ?transmembrane90 .
_:775270 a rdf:Statement ;
up:attribution _:775232 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:775271 a rdf:Statement ;
up:attribution _:775233 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:775272 a rdf:Statement ;
up:attribution _:775234 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:775273 a rdf:Statement ;
up:attribution _:775235 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:775274 a rdf:Statement ;
up:attribution _:775236 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:775275 a rdf:Statement ;
up:attribution _:775237 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:775276 a rdf:Statement ;
up:attribution _:775238 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:775277 a rdf:Statement ;
up:attribution _:775239 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:775278 a rdf:Statement ;
up:attribution _:775240 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:775279 a rdf:Statement ;
up:attribution _:775241 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:775280 a rdf:Statement ;
up:attribution _:775242 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:775281 a rdf:Statement ;
up:attribution _:775243 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:444 .
_:775282 a rdf:Statement ;
up:attribution _:775244 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:775283 a rdf:Statement ;
up:attribution _:775245 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:775284 a rdf:Statement ;
up:attribution _:775246 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:775285 a rdf:Statement ;
up:attribution _:775247 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:594 .
_:775286 a rdf:Statement ;
up:attribution _:775248 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1208 .
_:775287 a rdf:Statement ;
up:attribution _:775249 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:775288 a rdf:Statement ;
up:attribution _:775250 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:775289 a rdf:Statement ;
up:attribution _:775251 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:775290 a rdf:Statement ;
up:attribution _:775252 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:775291 a rdf:Statement ;
up:attribution _:775253 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016780 .
_:775292 a rdf:Statement ;
up:attribution _:775254 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008654 .
_:775293 a rdf:Statement ;
up:attribution _:775255 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:775294 a rdf:Statement ;
up:source unirule:MF_02241 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:775295 a rdf:Statement ;
up:attribution _:775256 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:775296 a rdf:Statement ;
up:source unirule:MF_02241 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:775297 a rdf:Statement ;
up:attribution _:775257 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:775298 a rdf:Statement ;
up:source unirule:MF_02241 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:775299 a rdf:Statement ;
up:attribution _:775258 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:775300 a rdf:Statement ;
up:source unirule:MF_02241 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:775301 a rdf:Statement ;
up:attribution _:775259 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:775302 a rdf:Statement ;
up:source unirule:MF_02241 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:775303 a rdf:Statement ;
up:attribution _:775260 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:775304 a rdf:Statement ;
up:source unirule:MF_02241 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:775305 a rdf:Statement ;
up:attribution _:775261 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:775306 a rdf:Statement ;
up:source unirule:MF_02241 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:775307 a rdf:Statement ;
up:attribution _:775262 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:775308 a rdf:Statement ;
up:source unirule:MF_02241 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:775309 a rdf:Statement ;
up:attribution _:775263 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:775310 a rdf:Statement ;
up:source unirule:MF_02241 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:775311 a rdf:Statement ;
up:attribution _:775264 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:775312 a rdf:Statement ;
up:source unirule:MF_02241 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:775313 a rdf:Statement ;
up:attribution _:775265 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:775314 a rdf:Statement ;
up:source unirule:MF_02241 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:775315 a rdf:Statement ;
up:attribution _:775266 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:775316 a rdf:Statement ;
up:attribution _:775267 ;
rdf:subject ?sam89 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:775317 a rdf:Statement ;
up:attribution _:775268 ;
rdf:subject ?sam89 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:775318 a rdf:Statement ;
up:attribution _:775269 ;
rdf:subject ?sam89 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02241
#Rule MF_02241 Created by:? on:2019-12-19 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02241 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02241a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP9WPG7103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPG7105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPG7MF_0224198 .
?templateMotifSequenceMatchRegionP9WPG7103 faldo:begin ?templateMotifSequenceMatchBeginP9WPG7104 .
?templateMotifSequenceMatchBeginP9WPG7104 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPG799 ;
faldo:reference isoform:P9WPG7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPG7105 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02241109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPG7MF_02241100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02241108 .
?targetMotifMatchRegionMatchBeginMF_02241108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02241101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02241109 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPG7MF_0224198, 1, (STRLEN(?templateMotifCigarP9WPG7MF_0224198) - STRLEN(REPLACE(?templateMotifCigarP9WPG7MF_0224198, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP9WPG799) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241100, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241100) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241100, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241100) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_02241101) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPG7MF_0224198, 1, (STRLEN(?templateMotifCigarP9WPG7MF_0224198) - STRLEN(REPLACE(?templateMotifCigarP9WPG7MF_0224198, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP9WPG799) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241100, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241100) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241100, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241100) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_02241101) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER (REGEX('[DN][ARNDCQEGHILKMFPSTWYVBZJUOX][VLIM]T', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionP9WPG7120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPG7122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPG7MF_02241115 .
?templateMotifSequenceMatchRegionP9WPG7120 faldo:begin ?templateMotifSequenceMatchBeginP9WPG7121 .
?templateMotifSequenceMatchBeginP9WPG7121 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPG7116 ;
faldo:reference isoform:P9WPG7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPG7122 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02241126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPG7MF_02241117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02241125 .
?targetMotifMatchRegionMatchBeginMF_02241125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02241118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02241126 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPG7MF_02241115, 1, (STRLEN(?templateMotifCigarP9WPG7MF_02241115) - STRLEN(REPLACE(?templateMotifCigarP9WPG7MF_02241115, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP9WPG7116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241117, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241117) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241117, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241117) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_02241118) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP9WPG7135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPG7137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPG7MF_02241130 .
?templateMotifSequenceMatchRegionP9WPG7135 faldo:begin ?templateMotifSequenceMatchBeginP9WPG7136 .
?templateMotifSequenceMatchBeginP9WPG7136 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPG7131 ;
faldo:reference isoform:P9WPG7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPG7137 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02241141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPG7MF_02241132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02241140 .
?targetMotifMatchRegionMatchBeginMF_02241140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02241133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02241141 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPG7MF_02241130, 1, (STRLEN(?templateMotifCigarP9WPG7MF_02241130) - STRLEN(REPLACE(?templateMotifCigarP9WPG7MF_02241130, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP9WPG7131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241132, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241132) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241132, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241132) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_02241133) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionP9WPG7150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPG7152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPG7MF_02241145 .
?templateMotifSequenceMatchRegionP9WPG7150 faldo:begin ?templateMotifSequenceMatchBeginP9WPG7151 .
?templateMotifSequenceMatchBeginP9WPG7151 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPG7146 ;
faldo:reference isoform:P9WPG7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPG7152 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02241156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPG7MF_02241147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02241155 .
?targetMotifMatchRegionMatchBeginMF_02241155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02241148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02241156 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPG7MF_02241145, 1, (STRLEN(?templateMotifCigarP9WPG7MF_02241145) - STRLEN(REPLACE(?templateMotifCigarP9WPG7MF_02241145, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP9WPG7146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241147, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241147) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241147, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241147) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_02241148) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP9WPG7165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPG7167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPG7MF_02241160 .
?templateMotifSequenceMatchRegionP9WPG7165 faldo:begin ?templateMotifSequenceMatchBeginP9WPG7166 .
?templateMotifSequenceMatchBeginP9WPG7166 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPG7161 ;
faldo:reference isoform:P9WPG7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPG7167 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02241171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPG7MF_02241162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02241170 .
?targetMotifMatchRegionMatchBeginMF_02241170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02241163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02241171 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPG7MF_02241160, 1, (STRLEN(?templateMotifCigarP9WPG7MF_02241160) - STRLEN(REPLACE(?templateMotifCigarP9WPG7MF_02241160, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP9WPG7161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241162, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241162) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241162, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241162) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_02241163) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP9WPG7180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPG7182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPG7MF_02241175 .
?templateMotifSequenceMatchRegionP9WPG7180 faldo:begin ?templateMotifSequenceMatchBeginP9WPG7181 .
?templateMotifSequenceMatchBeginP9WPG7181 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPG7176 ;
faldo:reference isoform:P9WPG7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPG7182 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02241186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPG7MF_02241177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02241185 .
?targetMotifMatchRegionMatchBeginMF_02241185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02241178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02241186 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPG7MF_02241175, 1, (STRLEN(?templateMotifCigarP9WPG7MF_02241175) - STRLEN(REPLACE(?templateMotifCigarP9WPG7MF_02241175, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP9WPG7176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241177, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241177) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241177, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241177) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_02241178) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP9WPG7195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPG7197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPG7MF_02241190 .
?templateMotifSequenceMatchRegionP9WPG7195 faldo:begin ?templateMotifSequenceMatchBeginP9WPG7196 .
?templateMotifSequenceMatchBeginP9WPG7196 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPG7191 ;
faldo:reference isoform:P9WPG7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPG7197 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02241201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPG7MF_02241192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02241200 .
?targetMotifMatchRegionMatchBeginMF_02241200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02241193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02241201 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPG7MF_02241190, 1, (STRLEN(?templateMotifCigarP9WPG7MF_02241190) - STRLEN(REPLACE(?templateMotifCigarP9WPG7MF_02241190, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP9WPG7191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241192, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241192) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241192, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241192) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_02241193) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP9WPG7210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPG7212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPG7MF_02241205 .
?templateMotifSequenceMatchRegionP9WPG7210 faldo:begin ?templateMotifSequenceMatchBeginP9WPG7211 .
?templateMotifSequenceMatchBeginP9WPG7211 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPG7206 ;
faldo:reference isoform:P9WPG7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPG7212 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02241216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPG7MF_02241207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02241215 .
?targetMotifMatchRegionMatchBeginMF_02241215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02241208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02241216 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPG7MF_02241205, 1, (STRLEN(?templateMotifCigarP9WPG7MF_02241205) - STRLEN(REPLACE(?templateMotifCigarP9WPG7MF_02241205, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP9WPG7206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241207, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241207) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241207, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241207) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_02241208) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP9WPG7225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPG7227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPG7MF_02241220 .
?templateMotifSequenceMatchRegionP9WPG7225 faldo:begin ?templateMotifSequenceMatchBeginP9WPG7226 .
?templateMotifSequenceMatchBeginP9WPG7226 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPG7221 ;
faldo:reference isoform:P9WPG7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPG7227 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02241231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPG7MF_02241222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02241230 .
?targetMotifMatchRegionMatchBeginMF_02241230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02241223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02241231 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPG7MF_02241220, 1, (STRLEN(?templateMotifCigarP9WPG7MF_02241220) - STRLEN(REPLACE(?templateMotifCigarP9WPG7MF_02241220, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP9WPG7221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241222, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241222) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241222, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241222) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_02241223) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP9WPG7240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPG7242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPG7MF_02241235 .
?templateMotifSequenceMatchRegionP9WPG7240 faldo:begin ?templateMotifSequenceMatchBeginP9WPG7241 .
?templateMotifSequenceMatchBeginP9WPG7241 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPG7236 ;
faldo:reference isoform:P9WPG7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPG7242 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02241246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPG7MF_02241237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02241245 .
?targetMotifMatchRegionMatchBeginMF_02241245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02241238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02241246 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPG7MF_02241235, 1, (STRLEN(?templateMotifCigarP9WPG7MF_02241235) - STRLEN(REPLACE(?templateMotifCigarP9WPG7MF_02241235, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP9WPG7236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241237, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241237) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241237, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241237) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_02241238) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP9WPG7255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPG7257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPG7MF_02241250 .
?templateMotifSequenceMatchRegionP9WPG7255 faldo:begin ?templateMotifSequenceMatchBeginP9WPG7256 .
?templateMotifSequenceMatchBeginP9WPG7256 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPG7251 ;
faldo:reference isoform:P9WPG7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPG7257 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02241261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPG7MF_02241252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02241260 .
?targetMotifMatchRegionMatchBeginMF_02241260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02241253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02241261 edam:has_input signature:MF_02241 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPG7MF_02241250, 1, (STRLEN(?templateMotifCigarP9WPG7MF_02241250) - STRLEN(REPLACE(?templateMotifCigarP9WPG7MF_02241250, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP9WPG7251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241252, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241252) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPG7MF_02241252, 1, (STRLEN(?targetMotifMatchCigarP9WPG7MF_02241252) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPG7MF_02241252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_02241253) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs1t264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane265 ;
up:sequence ?thisSequence .
?samtransmembrane265 up:range ?samtransmembraner266 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner266 faldo:begin ?samtransmembraneb267 ;
faldo:end ?samtransmembranee268 .
?samtransmembraneb267 faldo:position ?samtransmembranebp269 ;
faldo:reference ?thisSequence .
?samtransmembranee268 faldo:position ?samtransmembraneep270 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam89) .
}
BIND(URI(CONCAT(STR(?this), '#MF_02241a95')) AS ?keyword95) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a96')) AS ?keyword96) .
BIND(URI(CONCAT(STR(?this), '#MF_02241a97')) AS ?keyword97) .
}
"xsd:string |
