| http://purl.uniprot.org/unirules/MF_03144#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:841832 up:source unirule:MF_03144 .
_:841833 up:source unirule:MF_03144 .
_:841834 up:source unirule:MF_03144 .
_:841835 up:source unirule:MF_03144 .
_:841836 up:source unirule:MF_03144 .
_:841837 up:source unirule:MF_03144 .
_:841838 up:source unirule:MF_03144 .
_:841839 up:source unirule:MF_03144 .
_:841840 up:source unirule:MF_03144 .
_:841841 up:source unirule:MF_03144 .
_:841842 up:source unirule:MF_03144 .
_:841843 up:source unirule:MF_03144 .
_:841844 up:source unirule:MF_03144 .
_:841845 up:source unirule:MF_03144 .
_:841846 up:source unirule:MF_03144 .
_:841847 up:source unirule:MF_03144 .
_:841848 up:source unirule:MF_03144 .
_:841849 up:source unirule:MF_03144 .
_:841850 up:source unirule:MF_03144 .
_:841851 up:source unirule:MF_03144 .
_:841852 up:source unirule:MF_03144 .
_:841853 up:source unirule:MF_03144 .
_:841854 up:source unirule:MF_03144 .
_:841855 up:source unirule:MF_03144 .
_:841856 up:source unirule:MF_03144 .
_:841857 up:source unirule:MF_03144 .
_:841858 up:source unirule:MF_03144 .
_:841859 up:source unirule:MF_03144 .
_:841860 up:source unirule:MF_03144 .
_:841861 up:source unirule:MF_03144 .
_:841862 up:source unirule:MF_03144 .
_:841863 up:source unirule:MF_03144 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0006388 ,
GO:0016886 ,
GO:0072669 ,
keyword:342 ,
keyword:436 ,
keyword:464 ,
keyword:479 ,
keyword:547 ,
keyword:819 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.5.1.8' ;
up:fullName 'RNA-splicing ligase RtcB homolog' ;
rdf:type up:Structured_Name .
?name1 up:fullName "3'-phosphate/5'-hydroxy nucleic acid ligase" ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment "Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs." .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 manganese ions per subunit' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Catalytic component of the tRNA-splicing ligase complex.' .
?annotation9 a up:Annotation ;
rdfs:comment "Ligation probably proceeds through 3 nucleotidyl transfer steps, with 2',3'-cyclic phosphate termini being hydrolyzed to 3'-P termini in a step that precedes 3'-P activation with GMP. In the first nucleotidyl transfer step, RTCB reacts with GTP to form a covalent RTCB-histidine-GMP intermediate with release of PPi; in the second step, the GMP moiety is transferred to the RNA 3'-P; in the third step, the 5'-OH from the opposite RNA strand attacks the activated 3'-P to form a 3',5'-phosphodiester bond and release GMP." .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RtcB family.' .
?case11 up:classifiedWith keyword:963 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:58115 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:58115 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:58115 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:58115 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'GMP-histidine intermediate' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:29035 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:29035 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:29035 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:29035 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:29035 .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation .
?pfsb83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf chebi:29035 .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf chebi:58115 .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation .
?pfsb97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf chebi:58115 .
_:841864 a rdf:Statement ;
up:attribution _:841832 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:841865 a rdf:Statement ;
up:attribution _:841833 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:841866 a rdf:Statement ;
up:attribution _:841834 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:841867 a rdf:Statement ;
up:attribution _:841835 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:841868 a rdf:Statement ;
up:attribution _:841836 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:841869 a rdf:Statement ;
up:attribution _:841837 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:841870 a rdf:Statement ;
up:attribution _:841838 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:841871 a rdf:Statement ;
up:attribution _:841839 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:841872 a rdf:Statement ;
up:attribution _:841840 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:841873 a rdf:Statement ;
up:attribution _:841841 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:841874 a rdf:Statement ;
up:attribution _:841842 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:841875 a rdf:Statement ;
up:attribution _:841843 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:841876 a rdf:Statement ;
up:attribution _:841844 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:841877 a rdf:Statement ;
up:attribution _:841845 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:841878 a rdf:Statement ;
up:attribution _:841846 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:841879 a rdf:Statement ;
up:attribution _:841847 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0072669 .
_:841880 a rdf:Statement ;
up:attribution _:841848 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016886 .
_:841881 a rdf:Statement ;
up:attribution _:841849 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006388 .
_:841882 a rdf:Statement ;
up:attribution _:841850 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:841883 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:841884 a rdf:Statement ;
up:attribution _:841851 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:841885 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:841886 a rdf:Statement ;
up:attribution _:841852 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:841887 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:841888 a rdf:Statement ;
up:attribution _:841853 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:841889 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:841890 a rdf:Statement ;
up:attribution _:841854 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:841891 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:841892 a rdf:Statement ;
up:attribution _:841855 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:841893 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:841894 a rdf:Statement ;
up:attribution _:841856 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:841895 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:841896 a rdf:Statement ;
up:attribution _:841857 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:841897 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:841898 a rdf:Statement ;
up:attribution _:841858 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:841899 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:841900 a rdf:Statement ;
up:attribution _:841859 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:841901 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:841902 a rdf:Statement ;
up:attribution _:841860 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:841903 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:841904 a rdf:Statement ;
up:attribution _:841861 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:841905 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:841906 a rdf:Statement ;
up:attribution _:841862 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:841907 a rdf:Statement ;
up:source unirule:MF_03144 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:841908 a rdf:Statement ;
up:attribution _:841863 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03144
#Rule MF_03144 Created by:? on:2012-11-02 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03144 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03144a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144102 .
?templateMotifSequenceMatchRegionQ9Y3I0107 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0108 .
?templateMotifSequenceMatchBeginQ9Y3I0108 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0103 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0109 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144112 .
?targetMotifMatchRegionMatchBeginMF_03144112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144113 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144102, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144102) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144102, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144104, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144104) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144104, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144104) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_03144105) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144102, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144102) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144102, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144104, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144104) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144104, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144104) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_03144105) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER (REGEX('NHY[ARNDCQEGHILKMFPSTWYVBZJUOX]E', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144119 .
?templateMotifSequenceMatchRegionQ9Y3I0124 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0125 .
?templateMotifSequenceMatchBeginQ9Y3I0125 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0120 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0126 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144129 .
?targetMotifMatchRegionMatchBeginMF_03144129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144130 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144119, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144119) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144119, CONCAT('^(?:-*[^-]){', STR(((353 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144121, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144121, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_03144122) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144119, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144119) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144119, CONCAT('^(?:-*[^-]){', STR(((354 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144121, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144121, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_03144122) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)) = 'HN')) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0141 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0143 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144136 .
?templateMotifSequenceMatchRegionQ9Y3I0141 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0142 .
?templateMotifSequenceMatchBeginQ9Y3I0142 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0137 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0143 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144147 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144138 .
?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144146 .
?targetMotifMatchRegionMatchBeginMF_03144146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144139 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144147 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144136, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144136) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144136, CONCAT('^(?:-*[^-]){', STR(((402 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144138, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144138) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144138, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144138) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) .
BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_03144139) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144136, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144136) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144136, CONCAT('^(?:-*[^-]){', STR(((405 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144138, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144138) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144138, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144138) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_03144139) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER (REGEX('GG[TS]M', SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144153 .
?templateMotifSequenceMatchRegionQ9Y3I0158 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0159 .
?templateMotifSequenceMatchBeginQ9Y3I0159 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0154 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0160 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144163 .
?targetMotifMatchRegionMatchBeginMF_03144163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144164 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144153, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144153) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144153, CONCAT('^(?:-*[^-]){', STR(((428 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144155, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144155, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_03144156) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144153, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144153) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144153, CONCAT('^(?:-*[^-]){', STR(((431 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144155, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144155, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_03144156) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER (REGEX('HG[AS]G', SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144170 .
?templateMotifSequenceMatchRegionQ9Y3I0175 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0176 .
?templateMotifSequenceMatchBeginQ9Y3I0176 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0171 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0177 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144180 .
?targetMotifMatchRegionMatchBeginMF_03144180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144181 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144170, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144170) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144170, CONCAT('^(?:-*[^-]){', STR(((428 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144172, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144172) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144172, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144172) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_03144173) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch189 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0190 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0192 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144185 .
?templateMotifSequenceMatchRegionQ9Y3I0190 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0191 .
?templateMotifSequenceMatchBeginQ9Y3I0191 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0186 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0192 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch193 faldo:location ?targetMotifMatchRegionMatch194 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144196 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144187 .
?targetMotifMatchRegionMatch194 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144195 .
?targetMotifMatchRegionMatchBeginMF_03144195 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144188 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144196 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144185, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144185) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144185, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144187, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144187) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144187, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144187) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_03144188) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144200 .
?templateMotifSequenceMatchRegionQ9Y3I0205 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0206 .
?templateMotifSequenceMatchBeginQ9Y3I0206 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0201 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0207 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144210 .
?targetMotifMatchRegionMatchBeginMF_03144210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144211 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144200, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144200) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144200, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144202, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144202) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144202, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144202) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_03144203) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t214) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0220 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0222 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144215 .
?templateMotifSequenceMatchRegionQ9Y3I0220 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0221 .
?templateMotifSequenceMatchBeginQ9Y3I0221 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0216 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0222 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144226 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144217 .
?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144225 .
?targetMotifMatchRegionMatchBeginMF_03144225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144218 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144226 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144215, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144215) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144215, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144217, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144217) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144217, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144217) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) .
BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_03144218) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t229) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch234 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0235 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0237 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144230 .
?templateMotifSequenceMatchRegionQ9Y3I0235 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0236 .
?templateMotifSequenceMatchBeginQ9Y3I0236 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0231 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0237 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch238 faldo:location ?targetMotifMatchRegionMatch239 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144241 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144232 .
?targetMotifMatchRegionMatch239 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144240 .
?targetMotifMatchRegionMatchBeginMF_03144240 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144233 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144241 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144230, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144230) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144230, CONCAT('^(?:-*[^-]){', STR(((227 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0231) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1242) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144232, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144232) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144232, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144232) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), '')))), '[^-]', ''))) AS ?step2243) .
BIND(((?step2243 + ?targetMotifMatchRegionMatchBeginPositionMF_03144233) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t244) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch249 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0250 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0252 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144245 .
?templateMotifSequenceMatchRegionQ9Y3I0250 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0251 .
?templateMotifSequenceMatchBeginQ9Y3I0251 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0246 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0252 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch253 faldo:location ?targetMotifMatchRegionMatch254 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144256 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144247 .
?targetMotifMatchRegionMatch254 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144255 .
?targetMotifMatchRegionMatchBeginMF_03144255 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144248 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144256 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144245, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144245) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144245, CONCAT('^(?:-*[^-]){', STR(((259 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1257) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144247, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144247) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144247, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144247) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), '')))), '[^-]', ''))) AS ?step2258) .
BIND(((?step2258 + ?targetMotifMatchRegionMatchBeginPositionMF_03144248) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t259) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch264 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0265 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0267 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144260 .
?templateMotifSequenceMatchRegionQ9Y3I0265 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0266 .
?templateMotifSequenceMatchBeginQ9Y3I0266 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0261 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0267 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch268 faldo:location ?targetMotifMatchRegionMatch269 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144271 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144262 .
?targetMotifMatchRegionMatch269 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144270 .
?targetMotifMatchRegionMatchBeginMF_03144270 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144263 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144271 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144260, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144260) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144260, CONCAT('^(?:-*[^-]){', STR(((353 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0261) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1272) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144262, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144262) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144262, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144262) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), '')))), '[^-]', ''))) AS ?step2273) .
BIND(((?step2273 + ?targetMotifMatchRegionMatchBeginPositionMF_03144263) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t274) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch279 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0280 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0282 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144275 .
?templateMotifSequenceMatchRegionQ9Y3I0280 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0281 .
?templateMotifSequenceMatchBeginQ9Y3I0281 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0276 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0282 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch283 faldo:location ?targetMotifMatchRegionMatch284 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144286 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144277 .
?targetMotifMatchRegionMatch284 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144285 .
?targetMotifMatchRegionMatchBeginMF_03144285 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144278 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144286 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144275, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144275) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144275, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1287) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144277, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144277) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144277, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144277) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), '')))), '[^-]', ''))) AS ?step2288) .
BIND(((?step2288 + ?targetMotifMatchRegionMatchBeginPositionMF_03144278) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs1t289) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch294 faldo:location ?templateMotifSequenceMatchRegionQ9Y3I0295 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3I0297 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3I0MF_03144290 .
?templateMotifSequenceMatchRegionQ9Y3I0295 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3I0296 .
?templateMotifSequenceMatchBeginQ9Y3I0296 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3I0291 ;
faldo:reference isoform:Q9Y3I0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3I0297 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
?targetMotifMatch298 faldo:location ?targetMotifMatchRegionMatch299 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03144301 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3I0MF_03144292 .
?targetMotifMatchRegionMatch299 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03144300 .
?targetMotifMatchRegionMatchBeginMF_03144300 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03144293 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03144301 edam:has_input signature:MF_03144 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3I0MF_03144290, 1, (STRLEN(?templateMotifCigarQ9Y3I0MF_03144290) - STRLEN(REPLACE(?templateMotifCigarQ9Y3I0MF_03144290, CONCAT('^(?:-*[^-]){', STR(((504 - ?templateMotifSequenceMatchBeginPositionQ9Y3I0291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1302) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144292, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144292) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3I0MF_03144292, 1, (STRLEN(?targetMotifMatchCigarQ9Y3I0MF_03144292) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3I0MF_03144292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), '')))), '[^-]', ''))) AS ?step2303) .
BIND(((?step2303 + ?targetMotifMatchRegionMatchBeginPositionMF_03144293) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs1t304) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse98) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03144a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case11) .
}
}
"xsd:string |
