| http://purl.uniprot.org/unirules/MF_03161#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:852390 up:source unirule:MF_03161 .
_:852391 up:source unirule:MF_03161 .
_:852392 up:source unirule:MF_03161 .
_:852393 up:source unirule:MF_03161 .
_:852394 up:source unirule:MF_03161 .
_:852395 up:source unirule:MF_03161 .
_:852396 up:source unirule:MF_03161 .
_:852397 up:source unirule:MF_03161 .
_:852398 up:source unirule:MF_03161 .
_:852399 up:source unirule:MF_03161 .
_:852400 up:source unirule:MF_03161 .
_:852401 up:source unirule:MF_03161 .
_:852402 up:source unirule:MF_03161 .
_:852403 up:source unirule:MF_03161 .
_:852404 up:source unirule:MF_03161 .
_:852405 up:source unirule:MF_03161 .
_:852406 up:source unirule:MF_03161 .
_:852407 up:source unirule:MF_03161 .
_:852408 up:source unirule:MF_03161 .
_:852409 up:source unirule:MF_03161 .
_:852410 up:source unirule:MF_03161 .
_:852411 up:source unirule:MF_03161 .
_:852412 up:source unirule:MF_03161 .
_:852413 up:source unirule:MF_03161 .
_:852414 up:source unirule:MF_03161 .
_:852415 up:source unirule:MF_03161 .
_:852416 up:source unirule:MF_03161 .
_:852417 up:source unirule:MF_03161 .
_:852418 up:source unirule:MF_03161 .
_:852419 up:source unirule:MF_03161 .
_:852420 up:source unirule:MF_03161 .
_:852421 up:source unirule:MF_03161 .
_:852422 up:source unirule:MF_03161 .
_:852423 up:source unirule:MF_03161 .
_:852424 up:source unirule:MF_03161 .
_:852425 up:source unirule:MF_03161 .
_:852426 up:source unirule:MF_03161 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0005759 ,
GO:0006476 ,
GO:0034979 ,
GO:0070403 ,
keyword:479 ,
keyword:496 ,
keyword:520 ,
keyword:808 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 a up:Subcellular_Location_Annotation .
?annotation2li3 up:cellularComponent .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the sirtuin family. Class II subfamily.' .
?case5 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?case6 up:alternativeName ?name8 ,
?name9 ,
?name10 ,
?name11 ,
?name12 ;
up:classifiedWith GO:0003950 ,
keyword:809 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name7 .
?name7 up:ecName '2.3.1.-' ;
up:fullName 'NAD-dependent protein lipoamidase sirtuin-4, mitochondrial' ;
rdf:type up:Structured_Name .
?name8 up:ecName '2.4.2.-' ;
up:fullName 'NAD-dependent ADP-ribosyltransferase sirtuin-4' ;
rdf:type up:Structured_Name .
?name9 up:ecName '2.3.1.-' ;
up:fullName 'NAD-dependent protein biotinylase sirtuin-4' ;
rdf:type up:Structured_Name .
?name10 up:ecName '2.3.1.286' ;
up:fullName 'NAD-dependent protein deacetylase sirtuin-4' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'Regulatory protein SIR2 homolog 4' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'SIR2-like protein 4' ;
rdf:type up:Structured_Name .
?case13 up:alternativeName ?name15 ;
up:recommendedName ?name14 .
?name14 up:ecName '2.3.1.-' ;
up:fullName 'NAD-dependent protein deacylase' ;
rdf:type up:Structured_Name .
?name15 up:fullName 'Regulatory protein SIR2 homolog' ;
rdf:type up:Structured_Name .
?pfs16 up:annotation ?annotation17 ,
?annotation23 ,
?annotation29 ,
?annotation35 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:29105 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:29105 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:29105 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:29105 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:57540 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:57540 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:57540 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:57540 .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf chebi:57540 .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
rdf:type up:Transit_Peptide_Annotation ;
rdfs:comment 'Mitochondrion' .
?pfsb84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
rdf:type up:Chain_Annotation ;
rdfs:comment '@PROTEIN_NAME@' .
?pfsb90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
_:852427 a rdf:Statement ;
up:attribution _:852390 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:852428 a rdf:Statement ;
up:attribution _:852391 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:852429 a rdf:Statement ;
up:attribution _:852392 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:852430 a rdf:Statement ;
up:attribution _:852393 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:852431 a rdf:Statement ;
up:attribution _:852394 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:852432 a rdf:Statement ;
up:attribution _:852395 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:852433 a rdf:Statement ;
up:attribution _:852396 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:852434 a rdf:Statement ;
up:attribution _:852397 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005759 .
_:852435 a rdf:Statement ;
up:attribution _:852398 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0034979 .
_:852436 a rdf:Statement ;
up:attribution _:852399 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070403 .
_:852437 a rdf:Statement ;
up:attribution _:852400 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006476 .
_:852438 a rdf:Statement ;
up:attribution _:852401 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:852439 a rdf:Statement ;
up:attribution _:852402 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:852440 a rdf:Statement ;
up:attribution _:852403 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:852441 a rdf:Statement ;
up:attribution _:852404 ;
rdf:subject ?case6 ;
rdf:predicate up:recommendedName ;
rdf:object ?name7 .
_:852442 a rdf:Statement ;
up:attribution _:852405 ;
rdf:subject ?case6 ;
rdf:predicate up:alternativeName ;
rdf:object ?name8 .
_:852443 a rdf:Statement ;
up:attribution _:852406 ;
rdf:subject ?case6 ;
rdf:predicate up:alternativeName ;
rdf:object ?name9 .
_:852444 a rdf:Statement ;
up:attribution _:852407 ;
rdf:subject ?case6 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:852445 a rdf:Statement ;
up:attribution _:852408 ;
rdf:subject ?case6 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:852446 a rdf:Statement ;
up:attribution _:852409 ;
rdf:subject ?case6 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:852447 a rdf:Statement ;
up:attribution _:852410 ;
rdf:subject ?case6 ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:852448 a rdf:Statement ;
up:attribution _:852411 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:809 .
_:852449 a rdf:Statement ;
up:attribution _:852412 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003950 .
_:852450 a rdf:Statement ;
up:attribution _:852413 ;
rdf:subject ?case13 ;
rdf:predicate up:recommendedName ;
rdf:object ?name14 .
_:852451 a rdf:Statement ;
up:attribution _:852414 ;
rdf:subject ?case13 ;
rdf:predicate up:alternativeName ;
rdf:object ?name15 .
_:852452 a rdf:Statement ;
up:source unirule:MF_03161 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:852453 a rdf:Statement ;
up:attribution _:852415 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:852454 a rdf:Statement ;
up:source unirule:MF_03161 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:852455 a rdf:Statement ;
up:attribution _:852416 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:852456 a rdf:Statement ;
up:source unirule:MF_03161 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:852457 a rdf:Statement ;
up:attribution _:852417 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:852458 a rdf:Statement ;
up:source unirule:MF_03161 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:852459 a rdf:Statement ;
up:attribution _:852418 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:852460 a rdf:Statement ;
up:source unirule:MF_03161 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:852461 a rdf:Statement ;
up:attribution _:852419 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:852462 a rdf:Statement ;
up:source unirule:MF_03161 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:852463 a rdf:Statement ;
up:attribution _:852420 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:852464 a rdf:Statement ;
up:source unirule:MF_03161 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:852465 a rdf:Statement ;
up:attribution _:852421 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:852466 a rdf:Statement ;
up:source unirule:MF_03161 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:852467 a rdf:Statement ;
up:attribution _:852422 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:852468 a rdf:Statement ;
up:source unirule:MF_03161 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:852469 a rdf:Statement ;
up:attribution _:852423 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:852470 a rdf:Statement ;
up:source unirule:MF_03161 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:852471 a rdf:Statement ;
up:attribution _:852424 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:852472 a rdf:Statement ;
up:source unirule:MF_03161 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:852473 a rdf:Statement ;
up:attribution _:852425 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:852474 a rdf:Statement ;
up:source unirule:MF_03161 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:852475 a rdf:Statement ;
up:attribution _:852426 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03161
#Rule MF_03161 Created by:? on:2012-08-22 Modified by:Catherine Rivoire on:2025-03-21
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01967 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03161a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E799 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_0196794 .
?templateMotifSequenceMatchRegionQ9Y6E799 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7100 .
?templateMotifSequenceMatchBeginQ9Y6E7100 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E795 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7101 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_0196796 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967104 .
?targetMotifMatchRegionMatchBeginMF_01967104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196797 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967105 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_0196794, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_0196794) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_0196794, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionQ9Y6E795) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196796, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196796) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196796, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196796) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0196797) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_0196794, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_0196794) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_0196794, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionQ9Y6E795) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196796, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196796) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196796, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196796) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_0196797) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_0196794, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_0196794) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_0196794, CONCAT('^(?:-*[^-]){', STR(((220 - ?templateMotifSequenceMatchBeginPositionQ9Y6E795) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196796, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196796) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196796, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196796) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_0196797) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_0196794, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_0196794) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_0196794, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionQ9Y6E795) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196796, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196796) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196796, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196796) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_0196797) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'C')) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967118 .
?templateMotifSequenceMatchRegionQ9Y6E7123 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7124 .
?templateMotifSequenceMatchBeginQ9Y6E7124 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7119 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7125 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967128 .
?targetMotifMatchRegionMatchBeginMF_01967128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967129 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967118, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967118) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967118, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967120, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967120) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967120, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967120) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_01967121) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs2t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER (BOUND(?thisPositionOn46)) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7138 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7140 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967133 .
?templateMotifSequenceMatchRegionQ9Y6E7138 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7139 .
?templateMotifSequenceMatchBeginQ9Y6E7139 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7134 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7140 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967144 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967135 .
?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967143 .
?targetMotifMatchRegionMatchBeginMF_01967143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967136 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967144 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967133, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967133) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967133, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967135, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967135) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967135, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967135) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_01967136) - 1) AS ?thisPositionOn53) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967133, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967133) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967133, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967135, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967135) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967135, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967135) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01967136) - 1) AS ?thisPositionOn54) .
BIND(?this AS ?pfs2t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER (REGEX('GAG[ARNDCQEGHILKMFPSTWYVBZJUOX]ST[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]G[IV]PDYR[ARNDCQEGHILKMFPSTWYVBZJUOX]{7)', SUBSTR(?thisSequenceValue, ?thisPositionOn53, (?thisPositionOn54 - ?thisPositionOn53)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967150 .
?templateMotifSequenceMatchRegionQ9Y6E7155 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7156 .
?templateMotifSequenceMatchBeginQ9Y6E7156 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7151 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7157 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967160 .
?targetMotifMatchRegionMatchBeginMF_01967160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967161 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967150, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967150) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967150, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967152, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967152) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967152, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967152) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01967153) - 1) AS ?thisPositionOn60) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967150, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967150) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967150, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967152, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967152) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967152, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967152) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_01967153) - 1) AS ?thisPositionOn61) .
BIND(?this AS ?pfs2t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, (?thisPositionOn61 - ?thisPositionOn60)) = 'QNVD')) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967167 .
?templateMotifSequenceMatchRegionQ9Y6E7172 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7173 .
?templateMotifSequenceMatchBeginQ9Y6E7173 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7168 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7174 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967177 .
?targetMotifMatchRegionMatchBeginMF_01967177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967178 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967167, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967167) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967167, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967169, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967169) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967169, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967169) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_01967170) - 1) AS ?thisPositionOn67) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967167, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967167) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967167, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967169, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967169) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967169, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967169) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_01967170) - 1) AS ?thisPositionOn68) .
BIND(?this AS ?pfs2t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER (REGEX('G[ST]S', SUBSTR(?thisSequenceValue, ?thisPositionOn67, (?thisPositionOn68 - ?thisPositionOn67)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967184 .
?templateMotifSequenceMatchRegionQ9Y6E7189 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7190 .
?templateMotifSequenceMatchBeginQ9Y6E7190 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7185 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7191 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967194 .
?targetMotifMatchRegionMatchBeginMF_01967194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967195 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967184, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967184) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967184, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967186, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967186) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967186, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967186) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_01967187) - 1) AS ?thisPositionOn74) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967184, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967184) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967184, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967186, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967186) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967186, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967186) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_01967187) - 1) AS ?thisPositionOn75) .
BIND(?this AS ?pfs2t200) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) .
FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn74, (?thisPositionOn75 - ?thisPositionOn74)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7206 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7208 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967201 .
?templateMotifSequenceMatchRegionQ9Y6E7206 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7207 .
?templateMotifSequenceMatchBeginQ9Y6E7207 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7202 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7208 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967212 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967203 .
?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967211 .
?targetMotifMatchRegionMatchBeginMF_01967211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967204 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967212 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967201, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967201) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967201, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967203, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967203) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967203, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967203) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_01967204) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs2t215) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch220 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7221 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7223 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967216 .
?templateMotifSequenceMatchRegionQ9Y6E7221 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7222 .
?templateMotifSequenceMatchBeginQ9Y6E7222 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7217 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7223 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch224 faldo:location ?targetMotifMatchRegionMatch225 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967227 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967218 .
?targetMotifMatchRegionMatch225 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967226 .
?targetMotifMatchRegionMatchBeginMF_01967226 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967219 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967227 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(1 AS ?thisPositionOn86) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967216, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967216) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967216, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1228) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967218, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967218) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967218, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967218) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), '')))), '[^-]', ''))) AS ?step2229) .
BIND(((?step2229 + ?targetMotifMatchRegionMatchBeginPositionMF_01967219) - 1) AS ?thisPositionOn87) .
BIND(?this AS ?pfs3t230) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) .
FILTER ((BOUND(?thisPositionOn86) && BOUND(?thisPositionOn87))) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch235 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7236 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7238 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967231 .
?templateMotifSequenceMatchRegionQ9Y6E7236 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7237 .
?templateMotifSequenceMatchBeginQ9Y6E7237 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7232 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7238 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch239 faldo:location ?targetMotifMatchRegionMatch240 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967242 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967233 .
?targetMotifMatchRegionMatch240 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967241 .
?targetMotifMatchRegionMatchBeginMF_01967241 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967234 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967242 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967231, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967231) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967231, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7232) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967233, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967233) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967233, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967233) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) .
BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_01967234) - 1) AS ?thisPositionOn92) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn93) .
BIND(?this AS ?pfs3t245) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse91) .
FILTER ((BOUND(?thisPositionOn92) && BOUND(?thisPositionOn93))) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag246) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag246, ?UNBOUND_VARIABLE) AS ?case5) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case6) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a7')) AS ?name7) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a8')) AS ?name8) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a12')) AS ?name12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case13) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a14')) AS ?name14) .
BIND(URI(CONCAT(STR(?this), '#MF_03161a15')) AS ?name15) .
}
}
"xsd:string |
