| http://purl.uniprot.org/unirules/MF_03178#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:863328 up:source unirule:MF_03178 .
_:863329 up:source unirule:MF_03178 .
_:863330 up:source unirule:MF_03178 .
_:863331 up:source unirule:MF_03178 .
_:863332 up:source unirule:MF_03178 .
_:863333 up:source unirule:MF_03178 .
_:863334 up:source unirule:MF_03178 .
_:863335 up:source unirule:MF_03178 .
_:863336 up:source unirule:MF_03178 .
_:863337 up:source unirule:MF_03178 .
_:863338 up:source unirule:MF_03178 .
_:863339 up:source unirule:MF_03178 .
_:863340 up:source unirule:MF_03178 .
_:863341 up:source unirule:MF_03178 .
_:863342 up:source unirule:MF_03178 .
_:863343 up:source unirule:MF_03178 .
_:863344 up:source unirule:MF_03178 .
_:863345 up:source unirule:MF_03178 .
_:863346 up:source unirule:MF_03178 .
_:863347 up:source unirule:MF_03178 .
_:863348 up:source unirule:MF_03178 .
_:863349 up:source unirule:MF_03178 .
_:863350 up:source unirule:MF_03178 .
_:863351 up:source unirule:MF_03178 .
_:863352 up:source unirule:MF_03178 .
_:863353 up:source unirule:MF_03178 .
_:863354 up:source unirule:MF_03178 .
_:863355 up:source unirule:MF_03178 .
_:863356 up:source unirule:MF_03178 .
_:863357 up:source unirule:MF_03178 .
_:863358 up:source unirule:MF_03178 .
_:863359 up:source unirule:MF_03178 .
_:863360 up:source unirule:MF_03178 .
_:863361 up:source unirule:MF_03178 .
_:863362 up:source unirule:MF_03178 .
_:863363 up:source unirule:MF_03178 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0005737 ,
GO:0010181 ,
GO:0016226 ,
GO:0016651 ,
GO:0050660 ,
GO:0050661 ,
keyword:274 ,
keyword:285 ,
keyword:288 ,
keyword:521 ,
keyword:560 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.18.1.-' ;
up:fullName 'NADPH-dependent diflavin oxidoreductase 1' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'NADPH-dependent FMN and FAD-containing oxidoreductase' ;
rdf:type up:Structured_Name .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity .
?annotation4 up:cofactor chebi:57692 ;
rdf:type up:Cofactor_Annotation .
?annotation5 up:cofactor chebi:58210 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NADPH-dependent diflavin oxidoreductase NDOR1 family.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'In the N-terminal section; belongs to the flavodoxin family.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.' .
?case9 up:classifiedWith GO:0005739 ,
keyword:496 .
?case10 up:classifiedWith GO:0048471 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Domain_Extent_Annotation ;
rdfs:comment 'Flavodoxin-like' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:58210 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:58210 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:58210 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:57692 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:57692 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:58349 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:58349 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:58210 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:57692 .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation .
?pfsb83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf chebi:58349 .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf chebi:58349 .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation .
?pfsb97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf chebi:57692 .
_:863364 a rdf:Statement ;
up:attribution _:863328 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:863365 a rdf:Statement ;
up:attribution _:863329 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:863366 a rdf:Statement ;
up:attribution _:863330 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:863367 a rdf:Statement ;
up:attribution _:863331 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:863368 a rdf:Statement ;
up:attribution _:863332 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:863369 a rdf:Statement ;
up:attribution _:863333 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:863370 a rdf:Statement ;
up:attribution _:863334 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:863371 a rdf:Statement ;
up:attribution _:863335 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:863372 a rdf:Statement ;
up:attribution _:863336 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:863373 a rdf:Statement ;
up:attribution _:863337 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:863374 a rdf:Statement ;
up:attribution _:863338 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:863375 a rdf:Statement ;
up:attribution _:863339 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:863376 a rdf:Statement ;
up:attribution _:863340 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:863377 a rdf:Statement ;
up:attribution _:863341 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:863378 a rdf:Statement ;
up:attribution _:863342 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:863379 a rdf:Statement ;
up:attribution _:863343 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050660 .
_:863380 a rdf:Statement ;
up:attribution _:863344 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010181 .
_:863381 a rdf:Statement ;
up:attribution _:863345 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050661 .
_:863382 a rdf:Statement ;
up:attribution _:863346 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016651 .
_:863383 a rdf:Statement ;
up:attribution _:863347 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016226 .
_:863384 a rdf:Statement ;
up:attribution _:863348 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:863385 a rdf:Statement ;
up:attribution _:863349 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005739 .
_:863386 a rdf:Statement ;
up:attribution _:863350 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0048471 .
_:863387 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:863388 a rdf:Statement ;
up:attribution _:863351 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:863389 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:863390 a rdf:Statement ;
up:attribution _:863352 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:863391 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:863392 a rdf:Statement ;
up:attribution _:863353 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:863393 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:863394 a rdf:Statement ;
up:attribution _:863354 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:863395 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:863396 a rdf:Statement ;
up:attribution _:863355 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:863397 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:863398 a rdf:Statement ;
up:attribution _:863356 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:863399 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:863400 a rdf:Statement ;
up:attribution _:863357 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:863401 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:863402 a rdf:Statement ;
up:attribution _:863358 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:863403 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:863404 a rdf:Statement ;
up:attribution _:863359 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:863405 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:863406 a rdf:Statement ;
up:attribution _:863360 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:863407 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:863408 a rdf:Statement ;
up:attribution _:863361 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:863409 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:863410 a rdf:Statement ;
up:attribution _:863362 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:863411 a rdf:Statement ;
up:source unirule:MF_03178 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:863412 a rdf:Statement ;
up:attribution _:863363 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03178
#Rule MF_03178 Created by:? on:2013-07-24 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03178 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03178a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178102 .
?templateMotifSequenceMatchRegionQ9UHB4107 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4108 .
?templateMotifSequenceMatchBeginQ9UHB4108 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4103 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4109 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178112 .
?targetMotifMatchRegionMatchBeginMF_03178112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178113 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178102, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178102) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178102, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionQ9UHB4103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178104, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178104) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178104, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178104) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_03178105) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178102, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178102) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178102, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionQ9UHB4103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178104, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178104) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178104, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178104) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_03178105) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178119 .
?templateMotifSequenceMatchRegionQ9UHB4124 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4125 .
?templateMotifSequenceMatchBeginQ9UHB4125 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4120 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4126 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178129 .
?targetMotifMatchRegionMatchBeginMF_03178129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178130 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178119, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178119) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178119, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionQ9UHB4120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178121, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178121, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_03178122) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178119, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178119) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178119, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionQ9UHB4120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178121, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178121, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178121) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_03178122) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER (REGEX('[ST][QE][ST]G[TN][AS]', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4141 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4143 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178136 .
?templateMotifSequenceMatchRegionQ9UHB4141 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4142 .
?templateMotifSequenceMatchBeginQ9UHB4142 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4137 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4143 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178147 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178138 .
?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178146 .
?targetMotifMatchRegionMatchBeginMF_03178146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178139 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178147 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178136, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178136) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178136, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionQ9UHB4137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178138, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178138) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178138, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178138) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) .
BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_03178139) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178136, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178136) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178136, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionQ9UHB4137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178138, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178138) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178138, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178138) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_03178139) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER (REGEX('[AS]T[ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178153 .
?templateMotifSequenceMatchRegionQ9UHB4158 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4159 .
?templateMotifSequenceMatchBeginQ9UHB4159 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4154 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4160 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178163 .
?targetMotifMatchRegionMatchBeginMF_03178163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178164 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178153, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178153) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178153, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionQ9UHB4154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178155, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178155, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_03178156) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178153, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178153) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178153, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionQ9UHB4154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178155, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178155, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_03178156) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER (REGEX('[LIVC]GD[ST][ST]Y[ARNDCQEGHILKMFPSTWYVBZJUOX][KR][FY][NC]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178170 .
?templateMotifSequenceMatchRegionQ9UHB4175 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4176 .
?templateMotifSequenceMatchBeginQ9UHB4176 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4171 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4177 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178180 .
?targetMotifMatchRegionMatchBeginMF_03178180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178181 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178170, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178170) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178170, CONCAT('^(?:-*[^-]){', STR(((382 - ?templateMotifSequenceMatchBeginPositionQ9UHB4171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178172, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178172) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178172, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178172) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_03178173) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178170, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178170) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178170, CONCAT('^(?:-*[^-]){', STR(((385 - ?templateMotifSequenceMatchBeginPositionQ9UHB4171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178172, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178172) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178172, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178172) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_03178173) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX][FY]S', SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4192 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4194 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178187 .
?templateMotifSequenceMatchRegionQ9UHB4192 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4193 .
?templateMotifSequenceMatchBeginQ9UHB4193 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4188 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4194 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178198 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178189 .
?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178197 .
?targetMotifMatchRegionMatchBeginMF_03178197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178190 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178198 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178187, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178187) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178187, CONCAT('^(?:-*[^-]){', STR(((416 - ?templateMotifSequenceMatchBeginPositionQ9UHB4188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178189, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178189) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178189, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178189) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_03178190) - 1) AS ?thisPositionOn51) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178187, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178187) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178187, CONCAT('^(?:-*[^-]){', STR(((419 - ?templateMotifSequenceMatchBeginPositionQ9UHB4188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178189, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178189) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178189, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178189) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_03178190) - 1) AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t203) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER (REGEX('G[LIV][CL][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn51, (?thisPositionOn52 - ?thisPositionOn51)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4209 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4211 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178204 .
?templateMotifSequenceMatchRegionQ9UHB4209 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4210 .
?templateMotifSequenceMatchBeginQ9UHB4210 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4205 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4211 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178215 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178206 .
?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178214 .
?targetMotifMatchRegionMatchBeginMF_03178214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178207 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178215 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178204, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178204) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178204, CONCAT('^(?:-*[^-]){', STR(((515 - ?templateMotifSequenceMatchBeginPositionQ9UHB4205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178206, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178206) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178206, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178206) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_03178207) - 1) AS ?thisPositionOn58) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178204, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178204) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178204, CONCAT('^(?:-*[^-]){', STR(((516 - ?templateMotifSequenceMatchBeginPositionQ9UHB4205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178206, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178206) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178206, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178206) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_03178207) - 1) AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, (?thisPositionOn59 - ?thisPositionOn58)) = 'SR')) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4226 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4228 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178221 .
?templateMotifSequenceMatchRegionQ9UHB4226 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4227 .
?templateMotifSequenceMatchBeginQ9UHB4227 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4222 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4228 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178232 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178223 .
?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178231 .
?targetMotifMatchRegionMatchBeginMF_03178231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178224 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178232 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178221, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178221) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178221, CONCAT('^(?:-*[^-]){', STR(((521 - ?templateMotifSequenceMatchBeginPositionQ9UHB4222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178223, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178223) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178223, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178223) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_03178224) - 1) AS ?thisPositionOn65) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178221, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178221) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178221, CONCAT('^(?:-*[^-]){', STR(((525 - ?templateMotifSequenceMatchBeginPositionQ9UHB4222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178223, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178223) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178223, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178223) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) .
BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_03178224) - 1) AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t237) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)YVQ', SUBSTR(?thisSequenceValue, ?thisPositionOn65, (?thisPositionOn66 - ?thisPositionOn65)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch242 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4243 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4245 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178238 .
?templateMotifSequenceMatchRegionQ9UHB4243 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4244 .
?templateMotifSequenceMatchBeginQ9UHB4244 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4239 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4245 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch246 faldo:location ?targetMotifMatchRegionMatch247 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178249 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178240 .
?targetMotifMatchRegionMatch247 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178248 .
?targetMotifMatchRegionMatchBeginMF_03178248 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178241 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178249 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178238, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178238) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178238, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionQ9UHB4239) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1250) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178240, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178240) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178240, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178240) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), '')))), '[^-]', ''))) AS ?step2251) .
BIND(((?step2251 + ?targetMotifMatchRegionMatchBeginPositionMF_03178241) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t252) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch257 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4258 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4260 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178253 .
?templateMotifSequenceMatchRegionQ9UHB4258 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4259 .
?templateMotifSequenceMatchBeginQ9UHB4259 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4254 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4260 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch261 faldo:location ?targetMotifMatchRegionMatch262 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178264 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178255 .
?targetMotifMatchRegionMatch262 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178263 .
?targetMotifMatchRegionMatchBeginMF_03178263 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178256 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178264 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178253, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178253) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178253, CONCAT('^(?:-*[^-]){', STR(((350 - ?templateMotifSequenceMatchBeginPositionQ9UHB4254) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1265) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178255, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178255) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178255, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178255) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), '')))), '[^-]', ''))) AS ?step2266) .
BIND(((?step2266 + ?targetMotifMatchRegionMatchBeginPositionMF_03178256) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t267) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch272 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4273 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4275 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178268 .
?templateMotifSequenceMatchRegionQ9UHB4273 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4274 .
?templateMotifSequenceMatchBeginQ9UHB4274 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4269 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4275 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch276 faldo:location ?targetMotifMatchRegionMatch277 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178279 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178270 .
?targetMotifMatchRegionMatch277 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178278 .
?targetMotifMatchRegionMatchBeginMF_03178278 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178271 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178279 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178268, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178268) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178268, CONCAT('^(?:-*[^-]){', STR(((460 - ?templateMotifSequenceMatchBeginPositionQ9UHB4269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1280) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178270, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178270) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178270, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178270) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), '')))), '[^-]', ''))) AS ?step2281) .
BIND(((?step2281 + ?targetMotifMatchRegionMatchBeginPositionMF_03178271) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t282) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch287 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4288 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4290 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178283 .
?templateMotifSequenceMatchRegionQ9UHB4288 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4289 .
?templateMotifSequenceMatchBeginQ9UHB4289 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4284 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4290 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch291 faldo:location ?targetMotifMatchRegionMatch292 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178294 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178285 .
?targetMotifMatchRegionMatch292 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178293 .
?targetMotifMatchRegionMatchBeginMF_03178293 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178286 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178294 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178283, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178283) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178283, CONCAT('^(?:-*[^-]){', STR(((558 - ?templateMotifSequenceMatchBeginPositionQ9UHB4284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1295) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178285, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178285) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178285, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178285) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), '')))), '[^-]', ''))) AS ?step2296) .
BIND(((?step2296 + ?targetMotifMatchRegionMatchBeginPositionMF_03178286) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs1t297) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch302 faldo:location ?templateMotifSequenceMatchRegionQ9UHB4303 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UHB4305 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UHB4MF_03178298 .
?templateMotifSequenceMatchRegionQ9UHB4303 faldo:begin ?templateMotifSequenceMatchBeginQ9UHB4304 .
?templateMotifSequenceMatchBeginQ9UHB4304 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UHB4299 ;
faldo:reference isoform:Q9UHB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UHB4305 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch306 faldo:location ?targetMotifMatchRegionMatch307 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03178309 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UHB4MF_03178300 .
?targetMotifMatchRegionMatch307 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03178308 .
?targetMotifMatchRegionMatchBeginMF_03178308 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03178301 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03178309 edam:has_input signature:MF_03178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UHB4MF_03178298, 1, (STRLEN(?templateMotifCigarQ9UHB4MF_03178298) - STRLEN(REPLACE(?templateMotifCigarQ9UHB4MF_03178298, CONCAT('^(?:-*[^-]){', STR(((596 - ?templateMotifSequenceMatchBeginPositionQ9UHB4299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178300, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178300) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UHB4MF_03178300, 1, (STRLEN(?targetMotifMatchCigarQ9UHB4MF_03178300) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UHB4MF_03178300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) .
BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_03178301) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs1t312) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse98) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_03178a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon313 {taxon:7742 taxon:4751}
?thisOrganism rdfs:subClassOf+ ?supertaxon313 .
})) .
BIND(?this AS ?case11) .
}
}
"xsd:string |
