| http://purl.uniprot.org/unirules/MF_03180#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:865015 up:source unirule:MF_03180 .
_:865016 up:source unirule:MF_03180 .
_:865017 up:source unirule:MF_03180 .
_:865018 up:source unirule:MF_03180 .
_:865019 up:source unirule:MF_03180 .
_:865020 up:source unirule:MF_03180 .
_:865021 up:source unirule:MF_03180 .
_:865022 up:source unirule:MF_03180 .
_:865023 up:source unirule:MF_03180 .
_:865024 up:source unirule:MF_03180 .
_:865025 up:source unirule:MF_03180 .
_:865026 up:source unirule:MF_03180 .
_:865027 up:source unirule:MF_03180 .
_:865028 up:source unirule:MF_03180 .
_:865029 up:source unirule:MF_03180 .
_:865030 up:source unirule:MF_03180 .
_:865031 up:source unirule:MF_03180 .
_:865032 up:source unirule:MF_03180 .
_:865033 up:source unirule:MF_03180 .
_:865034 up:source unirule:MF_03180 .
_:865035 up:source unirule:MF_03180 .
_:865036 up:source unirule:MF_03180 .
_:865037 up:source unirule:MF_03180 .
_:865038 up:source unirule:MF_03180 .
_:865039 up:source unirule:MF_03180 .
_:865040 up:source unirule:MF_03180 .
_:865041 up:source unirule:MF_03180 .
_:865042 up:source unirule:MF_03180 .
_:865043 up:source unirule:MF_03180 .
_:865044 up:source unirule:MF_03180 .
_:865045 up:source unirule:MF_03180 .
_:865046 up:source unirule:MF_03180 .
_:865047 up:source unirule:MF_03180 .
_:865048 up:source unirule:MF_03180 .
_:865049 up:source unirule:MF_03180 .
_:865050 up:source unirule:MF_03180 .
_:865051 up:source unirule:MF_03180 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation3 ,
?annotation6 ;
up:classifiedWith GO:0002949 ,
GO:0005737 ,
GO:0016747 ,
keyword:12 ,
keyword:479 ,
keyword:539 ,
keyword:808 ,
keyword:819 ,
keyword:963 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 up:cofactor chebi:60240 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 divalent metal cation per subunit.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation3li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the KAE1 / TsaD family.' .
?case7 up:alternativeName ?name9 ,
?name10 ,
?name12 ;
up:classifiedWith keyword:10 ,
keyword:804 ,
keyword:805 ;
up:recommendedName ?name8 .
?name8 up:ecName '2.3.1.234' ;
up:fullName 'tRNA N6-adenosine threonylcarbamoyltransferase' ;
rdf:type up:Structured_Name .
?name9 up:fullName 'N6-L-threonylcarbamoyladenine synthase' ;
up:shortName 't(6)A synthase' ;
rdf:type up:Structured_Name .
?name10 up:fullName ?nameValue11 ;
rdf:type up:Structured_Name .
?name12 up:fullName ?nameValue13 ;
rdf:type up:Structured_Name .
?case14 up:alternativeName ?name16 ,
?name17 ,
?name18 ,
?name20 ;
up:recommendedName ?name15 .
?name15 up:ecName '2.3.1.234' ;
up:fullName 'tRNA N6-adenosine threonylcarbamoyltransferase' ;
rdf:type up:Structured_Name .
?name16 up:fullName 'N6-L-threonylcarbamoyladenine synthase' ;
up:shortName 't(6)A synthase' ;
rdf:type up:Structured_Name .
?name17 up:fullName 'O-sialoglycoprotein endopeptidase' ;
rdf:type up:Structured_Name .
?name18 up:fullName ?nameValue19 ;
rdf:type up:Structured_Name .
?name20 up:fullName ?nameValue21 ;
rdf:type up:Structured_Name .
?case24 up:alternativeName ?name26 ,
?name28 ;
up:recommendedName ?name25 .
?name25 up:ecName '2.3.1.234' ;
up:fullName 'Probable tRNA N6-adenosine threonylcarbamoyltransferase' ;
rdf:type up:Structured_Name .
?name26 up:fullName ?nameValue27 ;
rdf:type up:Structured_Name .
?name28 up:fullName ?nameValue29 ;
rdf:type up:Structured_Name .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf ?molecule35 .
?molecule35 rdfs:label 'substrate' .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:60240 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:60240 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:60240 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:60240 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf ?molecule71 .
?molecule71 rdfs:label 'substrate' .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf ?molecule79 .
?molecule79 rdfs:label 'substrate' .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf ?molecule87 .
?molecule87 rdfs:label 'substrate' .
?pfs90 up:annotation ?annotation91 .
?annotation91 faldo:begin ?pfsb92 ;
faldo:end ?pfse93 ;
up:ligand ?ligand94 ;
rdf:type up:Binding_Site_Annotation .
?pfsb92 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse93 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand94 rdfs:subClassOf ?molecule95 .
?molecule95 rdfs:label 'substrate' .
_:865052 a rdf:Statement ;
up:attribution _:865015 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:865053 a rdf:Statement ;
up:attribution _:865016 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:865054 a rdf:Statement ;
up:attribution _:865017 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:865055 a rdf:Statement ;
up:attribution _:865018 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:865056 a rdf:Statement ;
up:attribution _:865019 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:865057 a rdf:Statement ;
up:attribution _:865020 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:865058 a rdf:Statement ;
up:attribution _:865021 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:865059 a rdf:Statement ;
up:attribution _:865022 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:865060 a rdf:Statement ;
up:attribution _:865023 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:865061 a rdf:Statement ;
up:attribution _:865024 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:865062 a rdf:Statement ;
up:attribution _:865025 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:865063 a rdf:Statement ;
up:attribution _:865026 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016747 .
_:865064 a rdf:Statement ;
up:attribution _:865027 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002949 .
_:865065 a rdf:Statement ;
up:attribution _:865028 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:865066 a rdf:Statement ;
up:attribution _:865029 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name9 .
_:865067 a rdf:Statement ;
up:attribution _:865030 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:865068 a rdf:Statement ;
up:attribution _:865031 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:865069 a rdf:Statement ;
up:attribution _:865032 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:10 .
_:865070 a rdf:Statement ;
up:attribution _:865033 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:865071 a rdf:Statement ;
up:attribution _:865034 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:865072 a rdf:Statement ;
up:attribution _:865035 ;
rdf:subject ?case14 ;
rdf:predicate up:recommendedName ;
rdf:object ?name15 .
_:865073 a rdf:Statement ;
up:attribution _:865036 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name16 .
_:865074 a rdf:Statement ;
up:attribution _:865037 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name17 .
_:865075 a rdf:Statement ;
up:attribution _:865038 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name18 .
_:865076 a rdf:Statement ;
up:attribution _:865039 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name20 .
_:865077 a rdf:Statement ;
up:attribution _:865040 ;
rdf:subject ?case24 ;
rdf:predicate up:recommendedName ;
rdf:object ?name25 .
_:865078 a rdf:Statement ;
up:attribution _:865041 ;
rdf:subject ?case24 ;
rdf:predicate up:alternativeName ;
rdf:object ?name26 .
_:865079 a rdf:Statement ;
up:attribution _:865042 ;
rdf:subject ?case24 ;
rdf:predicate up:alternativeName ;
rdf:object ?name28 .
_:865080 a rdf:Statement ;
up:source unirule:MF_03180 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:865081 a rdf:Statement ;
up:attribution _:865043 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:865082 a rdf:Statement ;
up:source unirule:MF_03180 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:865083 a rdf:Statement ;
up:attribution _:865044 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:865084 a rdf:Statement ;
up:source unirule:MF_03180 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:865085 a rdf:Statement ;
up:attribution _:865045 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:865086 a rdf:Statement ;
up:source unirule:MF_03180 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:865087 a rdf:Statement ;
up:attribution _:865046 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:865088 a rdf:Statement ;
up:source unirule:MF_03180 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:865089 a rdf:Statement ;
up:attribution _:865047 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:865090 a rdf:Statement ;
up:source unirule:MF_03180 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:865091 a rdf:Statement ;
up:attribution _:865048 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:865092 a rdf:Statement ;
up:source unirule:MF_03180 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:865093 a rdf:Statement ;
up:attribution _:865049 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:865094 a rdf:Statement ;
up:source unirule:MF_03180 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:865095 a rdf:Statement ;
up:attribution _:865050 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:865096 a rdf:Statement ;
up:source unirule:MF_03180 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:865097 a rdf:Statement ;
up:attribution _:865051 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03180
#Rule MF_03180 Created by:? on:2013-10-17 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01446 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01447 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_0144698 .
?templateMotifSequenceMatchRegionQ9UXT7103 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7104 .
?templateMotifSequenceMatchBeginQ9UXT7104 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT799 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7105 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446108 .
?targetMotifMatchRegionMatchBeginMF_01446108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446109 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_0144698, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_0144698) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_0144698, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionQ9UXT799) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446100, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446100, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01446101) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_0144698, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_0144698) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_0144698, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionQ9UXT799) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446100, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446100, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01446101) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse33) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][SA]G[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446115 .
?templateMotifSequenceMatchRegionQ9UXT7120 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7121 .
?templateMotifSequenceMatchBeginQ9UXT7121 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7116 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7122 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446125 .
?targetMotifMatchRegionMatchBeginMF_01446125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446126 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446115, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446115) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446115, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionQ9UXT7116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446117, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446117, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01446118) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446130 .
?templateMotifSequenceMatchRegionQ9UXT7135 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7136 .
?templateMotifSequenceMatchBeginQ9UXT7136 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7131 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7137 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446140 .
?targetMotifMatchRegionMatchBeginMF_01446140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446141 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446130, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446130) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446130, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ9UXT7131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446132, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446132) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446132, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446132) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_01446133) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446145 .
?templateMotifSequenceMatchRegionQ9UXT7150 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7151 .
?templateMotifSequenceMatchBeginQ9UXT7151 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7146 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7152 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446155 .
?targetMotifMatchRegionMatchBeginMF_01446155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446156 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446145, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446145) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446145, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionQ9UXT7146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446147, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446147) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446147, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446147) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_01446148) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446160 .
?templateMotifSequenceMatchRegionQ9UXT7165 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7166 .
?templateMotifSequenceMatchBeginQ9UXT7166 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7161 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7167 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446170 .
?targetMotifMatchRegionMatchBeginMF_01446170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446171 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446160, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446160) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446160, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionQ9UXT7161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446162, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446162) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446162, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446162) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_01446163) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446175 .
?templateMotifSequenceMatchRegionQ9UXT7180 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7181 .
?templateMotifSequenceMatchBeginQ9UXT7181 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7176 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7182 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446185 .
?targetMotifMatchRegionMatchBeginMF_01446185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446186 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446175, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446175) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446175, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionQ9UXT7176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446177, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446177) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446177, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446177) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_01446178) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446190 .
?templateMotifSequenceMatchRegionQ9UXT7195 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7196 .
?templateMotifSequenceMatchBeginQ9UXT7196 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7191 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7197 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446200 .
?targetMotifMatchRegionMatchBeginMF_01446200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446201 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446190, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446190) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446190, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionQ9UXT7191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446192, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446192) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446192, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446192) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01446193) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse77) .
FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446205 .
?templateMotifSequenceMatchRegionQ9UXT7210 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7211 .
?templateMotifSequenceMatchBeginQ9UXT7211 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7206 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7212 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446215 .
?targetMotifMatchRegionMatchBeginMF_01446215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446216 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446205, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446205) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446205, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ9UXT7206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446207, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446207) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446207, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446207) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01446208) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse85) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446220 .
?templateMotifSequenceMatchRegionQ9UXT7225 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7226 .
?templateMotifSequenceMatchBeginQ9UXT7226 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7221 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7227 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446230 .
?targetMotifMatchRegionMatchBeginMF_01446230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446231 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446220, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446220) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446220, CONCAT('^(?:-*[^-]){', STR(((257 - ?templateMotifSequenceMatchBeginPositionQ9UXT7221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446222, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446222) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446222, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446222) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_01446223) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse93) .
FILTER (REGEX('[NS]', SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a91')) AS ?annotation91) .
BIND(?this AS ?pfs90) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a8')) AS ?name8) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a10')) AS ?name10) .
OPTIONAL {
?this up:encodedBy ?gene238 .
?gene238 up:locusName ?geneLocus236 .
}
OPTIONAL {
?this up:encodedBy ?gene238 .
?gene238 up:orfName ?geneOrf237 .
}
BIND(IF(BOUND(?geneLocus236), ?geneLocus236, ?geneOrf237) AS ?part235) .
BIND(CONCAT('t(6)A37 threonylcarbamoyladenosine biosynthesis protein ', ?part235) AS ?nameValue11) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a12')) AS ?name12) .
OPTIONAL {
?this up:encodedBy ?gene242 .
?gene242 up:locusName ?geneLocus240 .
}
OPTIONAL {
?this up:encodedBy ?gene242 .
?gene242 up:orfName ?geneOrf241 .
}
BIND(IF(BOUND(?geneLocus240), ?geneLocus240, ?geneOrf241) AS ?part239) .
BIND(CONCAT('tRNA threonylcarbamoyladenosine biosynthesis protein ', ?part239) AS ?nameValue13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case14) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a15')) AS ?name15) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a16')) AS ?name16) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a17')) AS ?name17) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a18')) AS ?name18) .
OPTIONAL {
?this up:encodedBy ?gene246 .
?gene246 up:locusName ?geneLocus244 .
}
OPTIONAL {
?this up:encodedBy ?gene246 .
?gene246 up:orfName ?geneOrf245 .
}
BIND(IF(BOUND(?geneLocus244), ?geneLocus244, ?geneOrf245) AS ?part243) .
BIND(CONCAT('t(6)A37 threonylcarbamoyladenosine biosynthesis protein ', ?part243) AS ?nameValue19) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a20')) AS ?name20) .
OPTIONAL {
?this up:encodedBy ?gene250 .
?gene250 up:locusName ?geneLocus248 .
}
OPTIONAL {
?this up:encodedBy ?gene250 .
?gene250 up:orfName ?geneOrf249 .
}
BIND(IF(BOUND(?geneLocus248), ?geneLocus248, ?geneOrf249) AS ?part247) .
BIND(CONCAT('tRNA threonylcarbamoyladenosine biosynthesis protein ', ?part247) AS ?nameValue21) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33083 .
BIND(?this AS ?case22) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?case23) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon251 {taxon:7742 taxon:4751}
?thisOrganism rdfs:subClassOf+ ?supertaxon251 .
})) .
BIND(?this AS ?case24) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a25')) AS ?name25) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a26')) AS ?name26) .
OPTIONAL {
?this up:encodedBy ?gene255 .
?gene255 up:locusName ?geneLocus253 .
}
OPTIONAL {
?this up:encodedBy ?gene255 .
?gene255 up:orfName ?geneOrf254 .
}
BIND(IF(BOUND(?geneLocus253), ?geneLocus253, ?geneOrf254) AS ?part252) .
BIND(CONCAT('t(6)A37 threonylcarbamoyladenosine biosynthesis protein ', ?part252) AS ?nameValue27) .
BIND(URI(CONCAT(STR(?this), '#MF_03180a28')) AS ?name28) .
OPTIONAL {
?this up:encodedBy ?gene259 .
?gene259 up:locusName ?geneLocus257 .
}
OPTIONAL {
?this up:encodedBy ?gene259 .
?gene259 up:orfName ?geneOrf258 .
}
BIND(IF(BOUND(?geneLocus257), ?geneLocus257, ?geneOrf258) AS ?part256) .
BIND(CONCAT('tRNA threonylcarbamoyladenosine biosynthesis protein ', ?part256) AS ?nameValue29) .
}
}
"xsd:string |
